Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_004441.1
Length=7388
Score E
Sequences producing significant alignments: (Bits) Value
seq643 425 3e-115
seq1144 196 2e-46
seq4341 159 2e-35
seq906 150 8e-33
seq945 138 5e-29
seq3031 87.8 8e-14
>seq643
Length=7254
Score = 425 bits (470), Expect = 3e-115
Identities = 383/475 (81%), Gaps = 5/475 (1%)
Strand=Plus/Minus
Query 196 TCAAGCACTTCTGTTTCCCCGGACCTAGTAGTGATAGGCTGTACCCACGGCCGAAGATGA 255
|||||||||||||||||||||||| |||| |||||||| | | |||| |||| ||
Sbjct 7212 TCAAGCACTTCTGTTTCCCCGGACTGAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGA 7153
Query 256 ACCCGTCCGTTATCCGGCTACCTACTTCGGGAAGCCTAGTAACATTCTGAA-GTCTCTGA 314
| ||| ||||| ||| | | |||||||| ||||| ||||| || |||| | | |
Sbjct 7152 AAACGTTCGTTACCCGACCAACTACTTCGAGAAGCTTAGTACCACCATGAACGAGGCAG- 7094
Query 315 GGCGTTTCGCTCAGCACGACCCCGGTGTAGATCGGGCTGATGGGTCTCCGCATACCCCAC 374
|| |||||||||||||| ||||| ||||||||| |||||||| ||| | ||| |||||
Sbjct 7093 GGTGTTTCGCTCAGCACAACCCCAGTGTAGATCAGGCTGATGAGTCACTGCAACCCCCAT 7034
Query 375 GGGCGACCGTGGCGGAGGCCGCGTTGGCGGCCCGCCTATGGCGAAAGCCATAGGACGCCT 434
|||||||| |||| | ||| |||||||||||| ||| |||| |||| |||| |||||| |
Sbjct 7033 GGGCGACCATGGCAGTGGCTGCGTTGGCGGCCTGCCCATGGAGAAATCCATGGGACGC-T 6975
Query 435 CTTAGA-TGACAGGGTGTGAAGAGCCTACTGAGCTGGGTAGTAGTCCTCCGGCCCCTGAA 493
|| | ||||| ||||||||||||||| |||||| | | ||||||||||||||||||||
Sbjct 6974 CTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAA 6915
Query 494 TGCGGCTAATCCTAACCACGGAGCGTCCACCAGCAATCCAGCTGGCAGGGCGTCGTAACG 553
|||||||||||||||| |||||| | | | |||| || | | |||||||||
Sbjct 6914 TGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACG 6855
Query 554 GGCAACTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTGATCCTATTTT 613
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 6854 GGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATT 6795
Query 614 GGCTGCTTATGGTGACAA-CGATAAGTTGTTATCATAAAGCTCTTGGGTTGGCCA 667
|||||||||||||||||| | | |||||||| |||| |||| |||| |||||||
Sbjct 6794 GGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCA 6740
Score = 331 bits (366), Expect = 4e-87
Identities = 1137/1728 (66%), Gaps = 71/1728 (4%)
Strand=Plus/Minus
Query 5571 GATGAACAAGGGGTATCATTAGAGCTCACACTTGTCACCCTCAAAAGAAATGAGAAATTT 5630
|| ||||||||||| |||||||||||||| || || || | | || || ||||||
Sbjct 1764 GACGAACAAGGGGTTAACTTAGAGCTCACACTGGTAACGCTTGATACTAACGAAAAATTT 1705
Query 5631 AGAGACATCAGAGCTATGATTCCGGAGAACCCGT-GTGGAACTAATGAGGCAGTTGTTTG 5689
|||||||||| | | || || || ||| | || ||| ||| || | |
Sbjct 1704 AGAGACATCACAAGATTCATACCAGA-AACAATTAGTCCTGCTAGTGATGCCACTTTAGT 1646
Query 5690 TGTGAATACCAGCAATTTTCCAAATGCATTTTTGCCAGTTGGCAAAGTGGAGTATTATGG 5749
| | ||||| || | || | | ||| |||||||||| | |||| | |||||
Sbjct 1645 TATAAATACTGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGG 1586
Query 5750 ATATCTTAACCT-AGCAGGAAGTCCAACTCACCGAACCATGATGTACAACTTCCCAACTA 5808
| | | ||||| || | ||| ||| ||||| | || ||||||||||| |||||||| |
Sbjct 1585 GTTTTTGAACCTTAGTGGTAAGCCCA-CTCACAGGACTATGATGTACAATTTCCCAACAA 1527
Query 5809 AAGCGGGACAGTGTGGTGGAGTGGTTCTTTCTACAGGGAAAGTGCTAGGTATCCACATTG 5868
|||| |||||||||||||| || || | | || |||||| | || ||||||||||
Sbjct 1526 AAGCAGGACAGTGTGGTGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCACATTG 1467
Query 5869 GGGGAAACGGTGCACAAGGATTCTGTGCTGCCTTGAAAAGATCGTACTT---CACTAAGC 5925
| || |||||| ||||| ||||| |||||| |||| || ||||| || | |
Sbjct 1466 GTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGA-- 1409
Query 5926 CACAAGGCAAGATTGATTGGGTTGAACCC-TCTAAGAAACATGG--GTTTCCAGTGATTA 5982
|||||| |||| | ||| | | ||| | ||||||| ||| | || | || |
Sbjct 1408 -ACAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAAC-TGGCAGGTTGAA--CATCA 1353
Query 5983 ATGCACCATCCAAAACCAAACTTGAGCCCAGTGTTTTCTTTGATGTGTTTGAGGGAGTCA 6042
| | ||| | || || ||||| || ||||| || |||||||| || || |
Sbjct 1352 ACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTA 1293
Query 6043 AAGAACCAGCTGCTCTTCATCCAAAGGACCCCAGGCTTGAGGTTAACTTGGAAGAAGCAC 6102
|||| ||||| | || | || ||||| ||||| || ||| |||| ||| | || |
Sbjct 1292 AAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTC 1233
Query 6103 TCTTTTCCAAATACACTGGTAACGTAGACATTGAGATGCC--AGAGGAAATGAAAGAGGC 6160
| ||||| |||||| || ||| | | | || || ||| | || |||||
Sbjct 1232 TTTTTTCAAAATACGTGGGGAAC--ACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGC 1175
Query 6161 GGTGGATCATTATGCTAATCAGCTTTTGGCACTAGACATACCAACTGAGCCAC-----TT 6215
|| |||||||| || || | | ||| | | ||| ||| || |||| |
Sbjct 1174 GGCCTTACATTATGCCAACCAAC-TCAAGCAGT-TAGATATCAA--GA-CCACCAAGATG 1120
Query 6216 AGCATGGAGGAAGCCATTTATGGCACGGAAGGCCTTGAAGCTCTGGAT-TTAACAACAAG 6274
||||||||||| || ||| ||||| || ||| |||||| | ||| || || |||||
Sbjct 1119 AGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAG 1061
Query 6275 TGCTGGATACCCTTATGTTACCATGGGGATAAAGAAGAGAGATATTCTAAACAAAGAAAC 6334
||| ||||| || || | | | || || ||||| | || ||| | | | |||
Sbjct 1060 TGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 1001
Query 6335 CAGAGATGTGAAGAAGATGCAAGAGTGCATTGACAAGTATGGATTGAACCT-CCCTATGG 6393
| ||||| | |||||| || | ||| ||||||||||| ||| | || || ||
Sbjct 1000 TCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTC 941
Query 6394 TCACATACATAAAGGATGAACTTAGATCCAAGGAGAAAGTGAAAAAGGGAAAGAGTAGAC 6453
| || || | || ||||||||||| ||| || || | || || || ||| | | |
Sbjct 940 T-ACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTC 882
Query 6454 TGATTGAAGCATCCAGTTTAAATGATTCTGTAGCCATGAG-GTGTTATTTTGGCAATTTG 6512
| || ||||| ||| ||||||| || || | |||| || |||| |||| ||
Sbjct 881 TCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTT- 823
Query 6513 TACAAGGCTTTCCACCAAAACCCAGGCACCCTAACTGGATGCGCTGTTGGATGTGACCCA 6572
|| | ||||||||| || ||||| || | || || | |||||||| || |||||
Sbjct 822 TATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCA 763
Query 6573 GATACCTTTTGGAGCAAGATTCCAGTAATGATGGATGGTGAGTTGTTTGGTTTTGATTAC 6632
||| || ||||||||| | ||| | | | || | | || | ||||| |||
Sbjct 762 GATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTAC 703
Query 6633 ACCGCTTATGATGCCAGCTTGTCTCCACTCA---TGTTTCA-GGCTCTTCAGATGGTTTT 6688
| | ||||| ||| ||||| | || || |||| ||| || |||| || |
Sbjct 702 TCGGGGTATGA----CGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCT 647
Query 6689 GGAAAAGATTGGATTCGGAGAGGGAAAGCACTTTAT-TGATA-ACCTGTGCTAT---TCG 6743
| | ||||||| | || | | ||| | | | | ||| | | | || |
Sbjct 646 GCGGGAAATTGGATACTCCGAAG--ACGCAGTGTCTCTCATAGAAGGGATCAATCACACC 589
Query 6744 CATCACCTTTTTAGAGACAAGTATTATTTTGTTAAGGGAGGAATGCCATCTGGTTGCTCT 6803
||||| | | | | || ||||| |||| || |||||||| || ||||||||
Sbjct 588 CATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCA 529
Query 6804 GGGACCAGCATTTTTAACTCAATGATAAACAACATCATTATCAGGACAGTTGTACTTCAG 6863
|| ||| |||||| ||||| ||||| ||||| |||||||| || ||| | | || |
Sbjct 528 GGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAA 469
Query 6864 ACCTACAAGGGGATTGAATTAGATCAACTGAAAATTATAGCGTATGGGGACGATGTCATC 6923
|| | ||| ||||| || ||||| ||||||| || | || || ||||| ||||| |
Sbjct 468 ACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTG 409
Query 6924 GCCAGTTACCCATACAGAATTGACCCAGCTGAATTGGCCAAAGCTGGGGCAA-AACTA-G 6981
|| |||||||| | | ||||||| || ||||| ||| ||||| | || |
Sbjct 408 GCTAGTTACCCCTTCCCAATTGACTGTCTGGAGTTGGC--AAGAACAGGCAAGGAGTATG 351
Query 6982 GTCTTCACATGACTCCTCCAGACAAGTCGGAAACCT------ATGTAGATCTAGACTGGA 7035
|||| ||||| ||| | |||||||| | ||| ||| || | || | |||
Sbjct 350 GTCTAACTATGACCCCTGCCGACAAGTC---ACCCTGCTTTAATG-AGGT-TACA-TGGG 297
Query 7036 CGAATGTTACATTTTTAAAAAGAAACTTTGTGCCAGATGAGAAATACCCATTTCTTGTGC 7095
||||| || || || || ||| || |||| ||| | ||| ||| ||||| | |
Sbjct 296 AGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCC 237
Query 7096 ATCCGGTTATGCCCATGAAAGAGATTTACGAATCTATCAGGTGGACCAGAGATGCACGCA 7155
| || ||||| |||| |||||| ||||||| || | ||||||| ||||||||| |
Sbjct 236 ACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAA 177
Query 7156 ACACACAAGATCATGTGCGTTCTCTGTGCCTGCTTGCATGGCATAATGGCAGAAAAGAGT 7215
|| |||||||| ||||| || || ||| | | |||||||| || || | | | ||||
Sbjct 176 GTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGT 117
Query 7216 ACGAGGAGTTT-TG-CCGCAAGATCAGATCAGTACCAGTTGGCAGAGC 7261
| || | ||| || ||| ||||||||||| ||| |||| | |||
Sbjct 116 ATGAAAAATTTGTGAGTGCA--ATCAGATCAGTTCCAATTGGAAAAGC 71
Score = 163 bits (180), Expect = 1e-36
Identities = 269/385 (70%), Gaps = 10/385 (3%)
Strand=Plus/Minus
Query 1008 CCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAGTGATAGGGTGGCTCAATTGACC 1067
|| ||||| || |||||||| ||||| ||||||||||||||| ||||||| ||||| ||
Sbjct 6434 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 6375
Query 1068 TTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAACATCACAGTTGCCTATGGTGAA 1127
| || || || |||||||| ||||| ||||| ||||||| ||||| |||||||||
Sbjct 6374 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 6315
Query 1128 TGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGTAGACAAGACTACCAAACCAGGC 1187
||||| || |||| || | ||||| || || || ||||| | || ||||
Sbjct 6314 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 6255
Query 1188 GTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGAAA----TGGGAGGCAACTACTA 1242
||||| ||| |||| || ||||||| |||| | ||| |||||| | | |
Sbjct 6254 GTTTC-GGTGAATAGGTTTTACACAT----TGGACACAAAATTGTGGGAGAAGTCATCCA 6200
Query 1243 AAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAGCTTGGCGTTTTTGGACAGAATT 1302
| || ||| | |||||| | || || | | || || || || ||||| || |||
Sbjct 6199 AGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATG 6140
Query 1303 GTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATACACGTGCAATGTAATGCCACGA 1362
|||||||| | | | ||| ||| |||| | || |||||||| || ||||| | |
Sbjct 6139 CACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTA 6080
Query 1363 AGTTTCATCAGGGCACATTACTAGT 1387
|||| || || || || | |||||
Sbjct 6079 AGTTCCACCAAGGAGCACTCCTAGT 6055
Score = 159 bits (176), Expect = 2e-35
Identities = 313/456 (69%), Gaps = 14/456 (3%)
Strand=Plus/Minus
Query 4281 GAGACCATCTTTGGAAACATTCAGTACCTAGCTCACCACTGCAGGAGATATGCCCCACTT 4340
||| | || ||||| ||| | ||||| || ||| |||| | | || || ||
Sbjct 3045 GAGGCGATGTTTGGCAACGTGTCTTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTC 2986
Query 4341 TATGCAGCTGAAGCCAGAAGGGTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAG 4400
||||| | ||||| | ||||| || ||| ||||||||||||| ||||| |||
Sbjct 2985 TATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAG 2926
Query 4401 TTCAAGAGCAAGCAACGGATTGAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACT 4460
||||||||||| || || ||||| |||||||| || | || ||| | |||| |||
Sbjct 2925 TTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACT 2866
Query 4461 GGAAAATCACTTGCTACATCCATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAA 4520
|| || ||| | || ||| || |||| ||| ||||||| | | |||||
Sbjct 2865 GGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGT 2806
Query 4521 GTTTATGCGATTCCTCCAGACAGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTA 4580
|| ||| | | ||||||||| ||||| |||||||||||| | || ||| |||
Sbjct 2805 GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACT 2746
Query 4581 GTTATGGATGATCTCAACCAGAACCCGGATGGGAAAGATATGGTTGCT-TTTTGTCAAAT 4639
|||||||| || || ||| ||||| || |||||||| ||| | || |||||||| ||
Sbjct 2745 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATG-TCACTATTTTGTCAGAT 2687
Query 4640 GGTCTCCACCGTGCCTTACCATGTA---CCTATGGCTGCCATTGAAGAGAAGGGAATGCT 4696
||||||||| ||| || | || |||||||| | | || ||||||||| | ||
Sbjct 2686 GGTCTCCACAGTGGATT---TTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGT-CT 2631
Query 4697 CTTTACCAGCTCC---TATGTTTTGGCTTCCACTAA 4729
| || || |||| | ||| | || ||||||||
Sbjct 2630 CATT--CACCTCCAAGTTTGTGATTGCCTCCACTAA 2597
Score = 107 bits (118), Expect = 9e-20
Identities = 236/351 (67%), Gaps = 2/351 (1%)
Strand=Plus/Minus
Query 3321 TTTGGTCAGCAGAGTGGAGCCATTTATGTGGGCAATTACAAAATTATGAATAGACACCTT 3380
||||| |||||| ||||| || || |||||||| | | | | | || | || |||
Sbjct 4040 TTTGGACAGCAGTCCGGAGCTATCTACGTGGGCAACTTTAGAGTGGTTAACCGCCATCTT 3981
Query 3381 GCAACCCATGAAGATTGGGAAAATGTAGAGTGGGAAGATTACAACAGAGATATTCTTGTG 3440
|| || ||| | || |||| ||| | | |||||||| | | | || | || ||
Sbjct 3980 GCTACTCATAATGACTGGGCAAACCTTGTTTGGGAAGACAGCTCCCGCGACTTGCTCGTA 3921
Query 3441 GCTAGAACCACCGCCCATGGTGCTGACAAGCTTGCCAGATGTCACTGCAACACCGGAGTA 3500
| ||||| || || || ||||| | |||| | || | ||| | || |||||
Sbjct 3920 TCATCTACCACTGCTCAAGGCTGTGACACGATTGCTCGTTGCAATTGCCAGACAGGAGTG 3861
Query 3501 TATTACTGTAAGTCCAGGAACAAGCACTACCCAGTAACTTTCCAGGGTCCAGGCATCGAT 3560
||||| ||||| || | || || |||||||| || | |||| | || | | |||
Sbjct 3860 TATTATTGTAACTCAATGAGAAAACACTACCCGGTCAGTTTCTCGAAACCCAGTTT-GAT 3802
Query 3561 -TGGGTCGAGGCTAGTCAGTACTACCCAGCTAGATACCAGACCCATATGCTCCTTGCTTC 3619
| || ||||| || |||| || ||||||||||||||| | ||| | | |||||
Sbjct 3801 CTTCGTGGAGGCCAGCGAGTATTATCCAGCTAGATACCAGTCACATCTCATGCTTGCAGT 3742
Query 3620 GGGAATCTCGGAACCAGGTGACTGTGGTGGTATCCTCAGGTGCCAGCATGG 3670
||| ||||||||||| || || ||||| || || || ||||| |||||
Sbjct 3741 GGGTCATTCGGAACCAGGGGATTGCGGTGGCATTCTTAGATGCCAACATGG 3691
>seq1144
Length=1302
Score = 196 bits (216), Expect = 2e-46
Identities = 694/1063 (65%), Gaps = 31/1063 (3%)
Strand=Plus/Plus
Query 6216 AGCATGGAGGAAGCCATTTATGGCACGGAAGGCCTTGAAGCTCTGGATTTAACAACAAGT 6275
|||||||||||||| |||||||| ||| ||| || || | || | || |||
Sbjct 195 AGCATGGAGGAAGCGTGCTATGGCACTGAAAACCTGGAGGCAATTGACCTCTGCACTAGT 254
Query 6276 GCTGGATACCCTTATGTTACCATGGGGATAAAGAAGAGAGATATTCTAAACAAAGAAACC 6335
|| || ||||| || || | || || ||||| ||||| ||||| || ||||
Sbjct 255 GCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCTTGACCCCACAACC 314
Query 6336 AGAGATGTGAAGAAGATGCAAGAGTGCATTGACAAGTATGGATTGAACCTCCCTATGGTC 6395
|| |||||| |||||| || | || || || || || | | || || || ||
Sbjct 315 AGGGATGTGTCTAAGATGAAATTCTATATGGATAAATACGGGCTAGATCTGCC-ATACTC 373
Query 6396 -ACATACATAAAGGATGAACTTAGATCCAAGGAGAAAGTGAAAAAGGGAAAGAGTAGACT 6454
|| || | |||||||| ||||| ||| ||| ||| | || || |||||| | |
Sbjct 374 TACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAAGAAAGGAAAGTCACGCTT 433
Query 6455 GATTGAAGCATCCAGTTTAAATGATTCTGTAGCCATGAGG-TGTTATTTTGGCAATTTGT 6513
||| || || || || ||||| ||||| | | || || ||| |||| || |
Sbjct 434 GATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAATGGCTTTTGGGCACCTT-T 492
Query 6514 ACAAGGCTTTCCACCAAAACCCAGGCACCCTAACTGGATGCGCTGTTGGATGTGACCCAG 6573
| |||| || || ||||| ||||| | ||||| | || || || ||| |||| |
Sbjct 493 ATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGCAGTGGGTTGTAACCCGG 552
Query 6574 ATACCTTTTGGAGCAAGATTCCAGTAATGATGGATGGTGAGTTGTTTGGTTTTGATTACA 6633
| ||||||||||| | || | || || ||| | | |||| ||||| |||
Sbjct 553 ACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTCTTTGCCTTTGACTACT 612
Query 6634 CCGCTTATGATGCCAGCTTGTCTCCACTC---ATGTTTCAGGCTCTTCAGATG--GTTTT 6688
| | |||||||| || |||| | | ||| |||||| ||| ||| | || ||
Sbjct 613 CAGGATATGATGCTAG----TCTCAGCCCGGTATGGTTCAGGG-CTTTAGAAGTTGTGTT 667
Query 6689 GGAAAAGATTGG--ATTCGGAG-AGGGAAAGCACTTTATTGATAACCTGTGCTATTCGCA 6745
||||||| |||| ||| ||| | | | || || | | | | ||
Sbjct 668 ACGGGAGATTGGGTATTCAGAGGAGGCCGTGTCCCTAATAGAAGGGATCAACCACACCCA 727
Query 6746 TCACCTTTTTAGAGACAAGTATTATTTTGTTAAGGGAGGAATGCCATCTGGTTGCTCTGG 6805
|| | | | | |||| || | ||| || |||||||| || || || |||||
Sbjct 728 CCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGG 787
Query 6806 GACCAGCATTTTTAACTCAATGATAAACAACATCATTATCAGGACAGTTGTACTTCAGAC 6865
|| ||| ||||| |||||||| ||||||||||| ||||| || || | | | ||
Sbjct 788 TACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAAC 847
Query 6866 CTACAAGGGGATTGAATTAGATCAACTGAAAATTATAGCGTATGGGGACGATGTCATCGC 6925
| ||||| || || | ||| | |||| || | || |||||||||||||| | ||
Sbjct 848 TTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGC 907
Query 6926 CAGTTACCCATACAGAATTGACCCAGCTGAATTGGCCAAAGCTGGGGCAAA-ACTA-GGT 6983
|||||||| | ||||| ||| ||||| || || |||||| | || |||
Sbjct 908 TAGTTACCCCTTTCCCATTGATTGCCTTGAGTTGGCTAAGACT--GGCAAAGAGTATGGT 965
Query 6984 CTTCACATGACTCCTCCAGACAAGTCGGAAACCTATGTAGATCTAG--AC-TGGACGAAT 7040
| |||||||||| ||||||| || | ||| | | || || || ||| |||
Sbjct 966 TTGACCATGACTCCTGCAGACAAATC---ACCCTGTTTCAATGAAGTAACATGGGAAAAT 1022
Query 7041 GTTACATTTTTAAAAAGAAACTTTGTGCCAGATGAGAAATACCCATTTCTTGTGCATCCG 7100
| ||| || | || ||| || ||||||| | ||| ||||| | | || ||
Sbjct 1023 GCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAATTCACCCT 1082
Query 7101 GTTATGCCCATGAAAGAGATTTACGAATCTATCAGGTGGACCAGAGATGCACGCAACACA 7160
|||||||||| |||||| | ||||| || | ||||| | ||| || ||||||||
Sbjct 1083 ACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCGCAACACC 1142
Query 7161 CAAGATCATGTGCGTTCTCTGTGCCTGCTTGCATGGCATAATGGCAGAAAAGAGTACGAG 7220
|||||||| ||||| || ||||| ||| | |||||||| ||||| | | || || |||
Sbjct 1143 CAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGAATATGAG 1202
Query 7221 GAGTTT-TG-CCGCAAGATCAGATCAGTACCAGTTGGCAGAGC 7261
||||| || ||| || |||||||| |||||||| | |||
Sbjct 1203 AAGTTTGTGAGTGCA--ATTAGATCAGTTCCAGTTGGAAAAGC 1243
>seq4341
Length=257
Score = 159 bits (176), Expect = 2e-35
Identities = 161/207 (78%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 196 TCAAGCACTTCTGTTTCCCCGGACCTAGTAGTGATAGGCTGTACCCACGGCCGAAGATGA 255
||||||||||||||||||||||||| |||| |||| ||| | | ||| |||| ||
Sbjct 206 TCAAGCACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCACGCGGTTGAAGGAGA 147
Query 256 ACCCGTCCGTTATCCGGCTACCTACTTCGGGAAGCCTAGTAACA-TTCTGAAGTCTCTGA 314
| ||||||||||||||||| |||||||| ||| | |||||||| ||||| | ||
Sbjct 146 AAGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGAAGCTGCAGA 87
Query 315 GGCGTTTCGCTCAGCACGACCCCGGTGTAGATCGGGCTGATGGGTCTCCGCATACCCCAC 374
| ||||||||| |||| |||| ||||||||| || |||| ||| | ||| ||||||
Sbjct 86 -GTGTTTCGCTCGGCACTTCCCCCGTGTAGATCAGGTCGATGAGTCACTGCAATCCCCAC 28
Query 375 GGGCGACCGTGGCGGAGGCCGCGTTGG 401
||| ||||||||| | ||| ||| |||
Sbjct 27 GGGTGACCGTGGCAGTGGCTGCGCTGG 1
>seq906
Length=2416
Score = 150 bits (166), Expect = 8e-33
Identities = 318/469 (68%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 3321 TTTGGTCAGCAGAGTGGAGCCATTTATGTGGGCAATTACAAAATTATGAATAGACACCTT 3380
|| || |||||| || ||||| || |||||||| | | | | | ||| | |||||
Sbjct 63 TTCGGCCAGCAGTCCGGGGCCATCTACGTGGGCAACTTTAGAGTGGTTAATCGTCACCTC 122
Query 3381 GCAACCCATGAAGATTGGGAAAATGTAGAGTGGGAAGATTACAACAGAGA--TATTCTTG 3438
|| || ||| | || |||| || | | |||||||| | | | || |||| ||
Sbjct 123 GCTACTCATAATGACTGGGCGAACCTCGTCTGGGAAGACAGCTCCCGCGACCTATTAGTG 182
Query 3439 TGG-CTAGAACCACCGCCCATGGTGCTGACAAGCTTGCCAGATGTCACTGCAACACCGGA 3497
| | ||| ||||||| || || ||| | |||| | ||| |||| | || |||
Sbjct 183 TCGTCTA---CCACCGCTCAGGGCTGTGATACAATTGCACGTTGTGACTGTCAAACAGGA 239
Query 3498 GTATATTACTGTAAGTCCAGGAACAAGCACTACCCAGTAA-CTTTCCAGGGTCCAGGCAT 3556
|| ||||| || || |||| || |||||||| ||||| | |||| | |||| | |
Sbjct 240 GTGTATTATTGCAATTCCAAGAGAAAGCACTATCCAGTCAGCTTTTCTAAACCCAGCC-T 298
Query 3557 CGATTGGGTCGAGGCTAGTCAGTACTACCCAGCTAGATACCAGACCCATATGCTCCTTGC 3616
| | || || ||||| |||| ||||| ||||||||||| | || || | |||||
Sbjct 299 CATATATGTGGAAGCTAGCGAGTATTACCCTGCTAGATACCAATCGCACCTGATGCTTGC 358
Query 3617 TTCGGGAATCTCGGAACCAGGTGACTGTGGTGGTATCCTCAGGTGCCAGCATGGAGTGAT 3676
|||| ||| || || || ||||| || || ||| | ||||| || ||||| || |
Sbjct 359 AGCGGGCCACTCTGAGCCCGGCGACTGCGGAGGCATCTTAAGGTGTCAACATGGTGTAGT 418
Query 3677 CGGTGTTGTGACTGCTGGGGGCCAGGGAGTGGTTGGATTTGCTGATGTGCGCGACCTCTT 3736
||| | ||| | | || ||| | || | |||||||||||||||||| | || |||||
Sbjct 419 TGGTATAGTGTCCACGGGTGGCAACGGGCTCGTTGGATTTGCTGATGTGAGGGATCTCTT 478
Query 3737 CTGGGTTGAGCATGAAGCAATGGAACAAGGCCTTACTGATTACATTCAG 3785
||| | || | || || ||||| ||||| | | || |||||| ||
Sbjct 479 GTGGTTAGATGAAGAGGCTATGGAGCAAGGTGTGTCCGACTACATTAAG 527
Score = 145 bits (160), Expect = 4e-31
Identities = 230/330 (70%), Gaps = 0/330 (0%)
Strand=Plus/Plus
Query 4362 GTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAGTTCAAGAGCAAGCAACGGATT 4421
||||||| |||| |||||||| ||||| |||||||||||||| || || |||
Sbjct 1104 GTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATT 1163
Query 4422 GAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACTGGAAAATCACTTGCTACATCC 4481
|| |||||||||||| | ||| ||| || | ||||||||||| || ||||| ||
Sbjct 1164 GAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGT 1223
Query 4482 ATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAAGTTTATGCGATTCCTCCAGAC 4541
|| |||| | ||||||| | | ||||| || || | |||| ||||||
Sbjct 1224 ATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTGTACTCACTTCCACCAGAC 1283
Query 4542 AGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTAGTTATGGATGATCTCAACCAG 4601
||||||||||||||| || | ||||| | || ||||||||||||||| ||
Sbjct 1284 CCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAA 1343
Query 4602 AACCCGGATGGGAAAGATATGGTTGCTTTTTGTCAAATGGTCTCCACCGTGCCTTACCAT 4661
||||| || || ||||| ||| ||||| || ||||| ||||||||| ||
Sbjct 1344 AACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATC 1403
Query 4662 GTACCTATGGCTGCCATTGAAGAGAAGGGA 4691
||| |||||| | | ||||| ||||||
Sbjct 1404 CCACCAATGGCTTCTCTCGAAGAAAAGGGA 1433
>seq945
Length=2018
Score = 138 bits (152), Expect = 5e-29
Identities = 341/515 (66%), Gaps = 22/515 (4%)
Strand=Plus/Minus
Query 872 AGGCTCCCACATAAATTACACCAACATTAACTACTACAGTCACTCC------GCGAGCGC 925
||||||| ||| |||||||| | ||| ||||| |||| ||||| |||| ||
Sbjct 1759 AGGCTCCACCATTAATTACACTACCATCAACTATTACAAAGACTCCTATGCTGCGACAGC 1700
Query 926 TAGTCAAAATAAACAAGACATCACTCAAGATCCTAGCAAATTTACTCAACCTATGGTAGA 985
|| ||||| | ||| ||||| ||| || ||| || | ||| | |||
Sbjct 1699 GGGT------AAACAGAGCCTCAAACAAGACCCTGATAAGTTTGCTAACCCTGTCAAAGA 1646
Query 986 TATCATGAAAGAATCTGCCGTCCCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAG 1045
|| | | ||| || | || | ||||| ||||| || || ||||||||||||||
Sbjct 1645 CATTTTCACTGAAATGGCTGCGCCACTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAG 1586
Query 1046 TGATAGGGTGGCTCAATTGACCTTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAA 1105
|||| | ||||| ||| | ||| | || ||| ||| || ||||| || ||||| || ||
Sbjct 1585 TGATCGCGTGGCACAACTCACCATTGGGAACTCCACCATTACTACACAGGAGGCGGCAAA 1526
Query 1106 CATCACAGTTGCCTATGGTGAATGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGT 1165
||||| ||| | || ||||| ||||| || |||| |||| || || || || ||
Sbjct 1525 CATCATAGTCGGTTACGGTGAGTGGCCCTCATACTGCTCTGATGACGACGCCACAGCGGT 1466
Query 1166 AGACAAGACTACCAAACCAGGCGTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGA 1224
||||| | || |||| ||||| ||| |||| || || ||| ||||| |
Sbjct 1465 GGACAAACCAACGCGCCCAGATGTTTC-GGTGAATAGGTTTTATACA----CTGGACACT 1411
Query 1225 AA----TGGGAGGCAACTACTAAAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAG 1280
|| ||||| | |||| || ||| | ||||| |||| || | |||| |||
Sbjct 1410 AAACTGTGGGAAAAGTCATCTAAGGGTTGGTATTGGAAGTTTCCTGATGTGTTGACTGAG 1351
Query 1281 CTTGGCGTTTTTGGACAGAATTGTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATA 1340
|| || ||||| ||||| ||||| || | || ||||| | |||| | ||
Sbjct 1350 ACCGGAGTCTTTGGCCAGAACGCACAGTTTCACTATTTGTATAGATCAGGGTTTTGCATT 1291
Query 1341 CACGTGCAATGTAATGCCACGAAGTTTCATCAGGG 1375
|| ||||||||||| || | ||||| ||||| ||
Sbjct 1290 CATGTGCAATGTAACGCTAGCAAGTTCCATCAAGG 1256
Score = 96.9 bits (106), Expect = 2e-16
Identities = 76/90 (84%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 579 CTTTGGGTGTCCGTGTTTCCTTTTGATCCTATTTTGGCTGCTTATGGTGACAACGATA-A 637
|| ||||||||||||||||||||| || ||| |||||||||||||||||||| | | |
Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATTACAGA 1959
Query 638 GTTGTTATCATAAAGCTCTTGGGTTGGCCA 667
|||||| |||| |||| |||| |||||||
Sbjct 1958 ATTGTTACCATATAGCTATTGGATTGGCCA 1929
>seq3031
Length=367
Score = 87.8 bits (96), Expect = 8e-14
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 5766 GGAAGTCCAACTCACCGAACCATGATGTACAACTTCCCAACTAAAGCGGGACAGTGTGGT 5825
|||| ||||| || | |||||||||||||| ||||| || ||||| |||||||||||
Sbjct 106 GGAAAGCCAACCCATAGGACCATGATGTACAATTTCCCTACAAAAGCAGGACAGTGTGGA 165
Query 5826 GGAGTGGTTCTTTCTACAGGGAAAGTGCTAGGTATCCACATTGGGGGAAACGGTGCACAA 5885
|| ||||| || || || | | || || |||||||| || ||||| |||
Sbjct 166 GGTGTGGTCACGTCAGTCGGTAAGATTGTTGGCATTCACATTGGCGGCAACGGGCGCCAA 225
Query 5886 GGATTCTGTGCTGCCTTGAAAAG 5908
|| |||||||||| ||||| ||
Sbjct 226 GGGTTCTGTGCTGGTTTGAAGAG 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23525012589376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |