Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_004441.1 Length=7388 Score E Sequences producing significant alignments: (Bits) Value seq643 425 3e-115 seq1144 196 2e-46 seq4341 159 2e-35 seq906 150 8e-33 seq945 138 5e-29 seq3031 87.8 8e-14 >seq643 Length=7254 Score = 425 bits (470), Expect = 3e-115 Identities = 383/475 (81%), Gaps = 5/475 (1%) Strand=Plus/Minus Query 196 TCAAGCACTTCTGTTTCCCCGGACCTAGTAGTGATAGGCTGTACCCACGGCCGAAGATGA 255 |||||||||||||||||||||||| |||| |||||||| | | |||| |||| || Sbjct 7212 TCAAGCACTTCTGTTTCCCCGGACTGAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGA 7153 Query 256 ACCCGTCCGTTATCCGGCTACCTACTTCGGGAAGCCTAGTAACATTCTGAA-GTCTCTGA 314 | ||| ||||| ||| | | |||||||| ||||| ||||| || |||| | | | Sbjct 7152 AAACGTTCGTTACCCGACCAACTACTTCGAGAAGCTTAGTACCACCATGAACGAGGCAG- 7094 Query 315 GGCGTTTCGCTCAGCACGACCCCGGTGTAGATCGGGCTGATGGGTCTCCGCATACCCCAC 374 || |||||||||||||| ||||| ||||||||| |||||||| ||| | ||| ||||| Sbjct 7093 GGTGTTTCGCTCAGCACAACCCCAGTGTAGATCAGGCTGATGAGTCACTGCAACCCCCAT 7034 Query 375 GGGCGACCGTGGCGGAGGCCGCGTTGGCGGCCCGCCTATGGCGAAAGCCATAGGACGCCT 434 |||||||| |||| | ||| |||||||||||| ||| |||| |||| |||| |||||| | Sbjct 7033 GGGCGACCATGGCAGTGGCTGCGTTGGCGGCCTGCCCATGGAGAAATCCATGGGACGC-T 6975 Query 435 CTTAGA-TGACAGGGTGTGAAGAGCCTACTGAGCTGGGTAGTAGTCCTCCGGCCCCTGAA 493 || | ||||| ||||||||||||||| |||||| | | |||||||||||||||||||| Sbjct 6974 CTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGAA 6915 Query 494 TGCGGCTAATCCTAACCACGGAGCGTCCACCAGCAATCCAGCTGGCAGGGCGTCGTAACG 553 |||||||||||||||| |||||| | | | |||| || | | ||||||||| Sbjct 6914 TGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACG 6855 Query 554 GGCAACTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTGATCCTATTTT 613 |||||||||| ||||||||||||||||||||||||||||||||||||| || ||| || Sbjct 6854 GGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATT 6795 Query 614 GGCTGCTTATGGTGACAA-CGATAAGTTGTTATCATAAAGCTCTTGGGTTGGCCA 667 |||||||||||||||||| | | |||||||| |||| |||| |||| ||||||| Sbjct 6794 GGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCA 6740 Score = 331 bits (366), Expect = 4e-87 Identities = 1137/1728 (66%), Gaps = 71/1728 (4%) Strand=Plus/Minus Query 5571 GATGAACAAGGGGTATCATTAGAGCTCACACTTGTCACCCTCAAAAGAAATGAGAAATTT 5630 || ||||||||||| |||||||||||||| || || || | | || || |||||| Sbjct 1764 GACGAACAAGGGGTTAACTTAGAGCTCACACTGGTAACGCTTGATACTAACGAAAAATTT 1705 Query 5631 AGAGACATCAGAGCTATGATTCCGGAGAACCCGT-GTGGAACTAATGAGGCAGTTGTTTG 5689 |||||||||| | | || || || ||| | || ||| ||| || | | Sbjct 1704 AGAGACATCACAAGATTCATACCAGA-AACAATTAGTCCTGCTAGTGATGCCACTTTAGT 1646 Query 5690 TGTGAATACCAGCAATTTTCCAAATGCATTTTTGCCAGTTGGCAAAGTGGAGTATTATGG 5749 | | ||||| || | || | | ||| |||||||||| | |||| | ||||| Sbjct 1645 TATAAATACTGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGG 1586 Query 5750 ATATCTTAACCT-AGCAGGAAGTCCAACTCACCGAACCATGATGTACAACTTCCCAACTA 5808 | | | ||||| || | ||| ||| ||||| | || ||||||||||| |||||||| | Sbjct 1585 GTTTTTGAACCTTAGTGGTAAGCCCA-CTCACAGGACTATGATGTACAATTTCCCAACAA 1527 Query 5809 AAGCGGGACAGTGTGGTGGAGTGGTTCTTTCTACAGGGAAAGTGCTAGGTATCCACATTG 5868 |||| |||||||||||||| || || | | || |||||| | || |||||||||| Sbjct 1526 AAGCAGGACAGTGTGGTGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCACATTG 1467 Query 5869 GGGGAAACGGTGCACAAGGATTCTGTGCTGCCTTGAAAAGATCGTACTT---CACTAAGC 5925 | || |||||| ||||| ||||| |||||| |||| || ||||| || | | Sbjct 1466 GTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGA-- 1409 Query 5926 CACAAGGCAAGATTGATTGGGTTGAACCC-TCTAAGAAACATGG--GTTTCCAGTGATTA 5982 |||||| |||| | ||| | | ||| | ||||||| ||| | || | || | Sbjct 1408 -ACAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAAC-TGGCAGGTTGAA--CATCA 1353 Query 5983 ATGCACCATCCAAAACCAAACTTGAGCCCAGTGTTTTCTTTGATGTGTTTGAGGGAGTCA 6042 | | ||| | || || ||||| || ||||| || |||||||| || || | Sbjct 1352 ACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTA 1293 Query 6043 AAGAACCAGCTGCTCTTCATCCAAAGGACCCCAGGCTTGAGGTTAACTTGGAAGAAGCAC 6102 |||| ||||| | || | || ||||| ||||| || ||| |||| ||| | || | Sbjct 1292 AAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTC 1233 Query 6103 TCTTTTCCAAATACACTGGTAACGTAGACATTGAGATGCC--AGAGGAAATGAAAGAGGC 6160 | ||||| |||||| || ||| | | | || || ||| | || ||||| Sbjct 1232 TTTTTTCAAAATACGTGGGGAAC--ACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGC 1175 Query 6161 GGTGGATCATTATGCTAATCAGCTTTTGGCACTAGACATACCAACTGAGCCAC-----TT 6215 || |||||||| || || | | ||| | | ||| ||| || |||| | Sbjct 1174 GGCCTTACATTATGCCAACCAAC-TCAAGCAGT-TAGATATCAA--GA-CCACCAAGATG 1120 Query 6216 AGCATGGAGGAAGCCATTTATGGCACGGAAGGCCTTGAAGCTCTGGAT-TTAACAACAAG 6274 ||||||||||| || ||| ||||| || ||| |||||| | ||| || || ||||| Sbjct 1119 AGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAG 1061 Query 6275 TGCTGGATACCCTTATGTTACCATGGGGATAAAGAAGAGAGATATTCTAAACAAAGAAAC 6334 ||| ||||| || || | | | || || ||||| | || ||| | | | ||| Sbjct 1060 TGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 1001 Query 6335 CAGAGATGTGAAGAAGATGCAAGAGTGCATTGACAAGTATGGATTGAACCT-CCCTATGG 6393 | ||||| | |||||| || | ||| ||||||||||| ||| | || || || Sbjct 1000 TCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTC 941 Query 6394 TCACATACATAAAGGATGAACTTAGATCCAAGGAGAAAGTGAAAAAGGGAAAGAGTAGAC 6453 | || || | || ||||||||||| ||| || || | || || || ||| | | | Sbjct 940 T-ACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTC 882 Query 6454 TGATTGAAGCATCCAGTTTAAATGATTCTGTAGCCATGAG-GTGTTATTTTGGCAATTTG 6512 | || ||||| ||| ||||||| || || | |||| || |||| |||| || Sbjct 881 TCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTT- 823 Query 6513 TACAAGGCTTTCCACCAAAACCCAGGCACCCTAACTGGATGCGCTGTTGGATGTGACCCA 6572 || | ||||||||| || ||||| || | || || | |||||||| || ||||| Sbjct 822 TATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCA 763 Query 6573 GATACCTTTTGGAGCAAGATTCCAGTAATGATGGATGGTGAGTTGTTTGGTTTTGATTAC 6632 ||| || ||||||||| | ||| | | | || | | || | ||||| ||| Sbjct 762 GATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTAC 703 Query 6633 ACCGCTTATGATGCCAGCTTGTCTCCACTCA---TGTTTCA-GGCTCTTCAGATGGTTTT 6688 | | ||||| ||| ||||| | || || |||| ||| || |||| || | Sbjct 702 TCGGGGTATGA----CGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCT 647 Query 6689 GGAAAAGATTGGATTCGGAGAGGGAAAGCACTTTAT-TGATA-ACCTGTGCTAT---TCG 6743 | | ||||||| | || | | ||| | | | | ||| | | | || | Sbjct 646 GCGGGAAATTGGATACTCCGAAG--ACGCAGTGTCTCTCATAGAAGGGATCAATCACACC 589 Query 6744 CATCACCTTTTTAGAGACAAGTATTATTTTGTTAAGGGAGGAATGCCATCTGGTTGCTCT 6803 ||||| | | | | || ||||| |||| || |||||||| || |||||||| Sbjct 588 CATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCA 529 Query 6804 GGGACCAGCATTTTTAACTCAATGATAAACAACATCATTATCAGGACAGTTGTACTTCAG 6863 || ||| |||||| ||||| ||||| ||||| |||||||| || ||| | | || | Sbjct 528 GGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAA 469 Query 6864 ACCTACAAGGGGATTGAATTAGATCAACTGAAAATTATAGCGTATGGGGACGATGTCATC 6923 || | ||| ||||| || ||||| ||||||| || | || || ||||| ||||| | Sbjct 468 ACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTG 409 Query 6924 GCCAGTTACCCATACAGAATTGACCCAGCTGAATTGGCCAAAGCTGGGGCAA-AACTA-G 6981 || |||||||| | | ||||||| || ||||| ||| ||||| | || | Sbjct 408 GCTAGTTACCCCTTCCCAATTGACTGTCTGGAGTTGGC--AAGAACAGGCAAGGAGTATG 351 Query 6982 GTCTTCACATGACTCCTCCAGACAAGTCGGAAACCT------ATGTAGATCTAGACTGGA 7035 |||| ||||| ||| | |||||||| | ||| ||| || | || | ||| Sbjct 350 GTCTAACTATGACCCCTGCCGACAAGTC---ACCCTGCTTTAATG-AGGT-TACA-TGGG 297 Query 7036 CGAATGTTACATTTTTAAAAAGAAACTTTGTGCCAGATGAGAAATACCCATTTCTTGTGC 7095 ||||| || || || || ||| || |||| ||| | ||| ||| ||||| | | Sbjct 296 AGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCC 237 Query 7096 ATCCGGTTATGCCCATGAAAGAGATTTACGAATCTATCAGGTGGACCAGAGATGCACGCA 7155 | || ||||| |||| |||||| ||||||| || | ||||||| ||||||||| | Sbjct 236 ACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAA 177 Query 7156 ACACACAAGATCATGTGCGTTCTCTGTGCCTGCTTGCATGGCATAATGGCAGAAAAGAGT 7215 || |||||||| ||||| || || ||| | | |||||||| || || | | | |||| Sbjct 176 GTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGT 117 Query 7216 ACGAGGAGTTT-TG-CCGCAAGATCAGATCAGTACCAGTTGGCAGAGC 7261 | || | ||| || ||| ||||||||||| ||| |||| | ||| Sbjct 116 ATGAAAAATTTGTGAGTGCA--ATCAGATCAGTTCCAATTGGAAAAGC 71 Score = 163 bits (180), Expect = 1e-36 Identities = 269/385 (70%), Gaps = 10/385 (3%) Strand=Plus/Minus Query 1008 CCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAGTGATAGGGTGGCTCAATTGACC 1067 || ||||| || |||||||| ||||| ||||||||||||||| ||||||| ||||| || Sbjct 6434 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 6375 Query 1068 TTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAACATCACAGTTGCCTATGGTGAA 1127 | || || || |||||||| ||||| ||||| ||||||| ||||| ||||||||| Sbjct 6374 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 6315 Query 1128 TGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGTAGACAAGACTACCAAACCAGGC 1187 ||||| || |||| || | ||||| || || || ||||| | || |||| Sbjct 6314 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 6255 Query 1188 GTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGAAA----TGGGAGGCAACTACTA 1242 ||||| ||| |||| || ||||||| |||| | ||| |||||| | | | Sbjct 6254 GTTTC-GGTGAATAGGTTTTACACAT----TGGACACAAAATTGTGGGAGAAGTCATCCA 6200 Query 1243 AAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAGCTTGGCGTTTTTGGACAGAATT 1302 | || ||| | |||||| | || || | | || || || || ||||| || ||| Sbjct 6199 AGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATG 6140 Query 1303 GTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATACACGTGCAATGTAATGCCACGA 1362 |||||||| | | | ||| ||| |||| | || |||||||| || ||||| | | Sbjct 6139 CACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTA 6080 Query 1363 AGTTTCATCAGGGCACATTACTAGT 1387 |||| || || || || | ||||| Sbjct 6079 AGTTCCACCAAGGAGCACTCCTAGT 6055 Score = 159 bits (176), Expect = 2e-35 Identities = 313/456 (69%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 4281 GAGACCATCTTTGGAAACATTCAGTACCTAGCTCACCACTGCAGGAGATATGCCCCACTT 4340 ||| | || ||||| ||| | ||||| || ||| |||| | | || || || Sbjct 3045 GAGGCGATGTTTGGCAACGTGTCTTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTC 2986 Query 4341 TATGCAGCTGAAGCCAGAAGGGTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAG 4400 ||||| | ||||| | ||||| || ||| ||||||||||||| ||||| ||| Sbjct 2985 TATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAG 2926 Query 4401 TTCAAGAGCAAGCAACGGATTGAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACT 4460 ||||||||||| || || ||||| |||||||| || | || ||| | |||| ||| Sbjct 2925 TTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACT 2866 Query 4461 GGAAAATCACTTGCTACATCCATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAA 4520 || || ||| | || ||| || |||| ||| ||||||| | | ||||| Sbjct 2865 GGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGT 2806 Query 4521 GTTTATGCGATTCCTCCAGACAGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTA 4580 || ||| | | ||||||||| ||||| |||||||||||| | || ||| ||| Sbjct 2805 GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACT 2746 Query 4581 GTTATGGATGATCTCAACCAGAACCCGGATGGGAAAGATATGGTTGCT-TTTTGTCAAAT 4639 |||||||| || || ||| ||||| || |||||||| ||| | || |||||||| || Sbjct 2745 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATG-TCACTATTTTGTCAGAT 2687 Query 4640 GGTCTCCACCGTGCCTTACCATGTA---CCTATGGCTGCCATTGAAGAGAAGGGAATGCT 4696 ||||||||| ||| || | || |||||||| | | || ||||||||| | || Sbjct 2686 GGTCTCCACAGTGGATT---TTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGT-CT 2631 Query 4697 CTTTACCAGCTCC---TATGTTTTGGCTTCCACTAA 4729 | || || |||| | ||| | || |||||||| Sbjct 2630 CATT--CACCTCCAAGTTTGTGATTGCCTCCACTAA 2597 Score = 107 bits (118), Expect = 9e-20 Identities = 236/351 (67%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 3321 TTTGGTCAGCAGAGTGGAGCCATTTATGTGGGCAATTACAAAATTATGAATAGACACCTT 3380 ||||| |||||| ||||| || || |||||||| | | | | | || | || ||| Sbjct 4040 TTTGGACAGCAGTCCGGAGCTATCTACGTGGGCAACTTTAGAGTGGTTAACCGCCATCTT 3981 Query 3381 GCAACCCATGAAGATTGGGAAAATGTAGAGTGGGAAGATTACAACAGAGATATTCTTGTG 3440 || || ||| | || |||| ||| | | |||||||| | | | || | || || Sbjct 3980 GCTACTCATAATGACTGGGCAAACCTTGTTTGGGAAGACAGCTCCCGCGACTTGCTCGTA 3921 Query 3441 GCTAGAACCACCGCCCATGGTGCTGACAAGCTTGCCAGATGTCACTGCAACACCGGAGTA 3500 | ||||| || || || ||||| | |||| | || | ||| | || ||||| Sbjct 3920 TCATCTACCACTGCTCAAGGCTGTGACACGATTGCTCGTTGCAATTGCCAGACAGGAGTG 3861 Query 3501 TATTACTGTAAGTCCAGGAACAAGCACTACCCAGTAACTTTCCAGGGTCCAGGCATCGAT 3560 ||||| ||||| || | || || |||||||| || | |||| | || | | ||| Sbjct 3860 TATTATTGTAACTCAATGAGAAAACACTACCCGGTCAGTTTCTCGAAACCCAGTTT-GAT 3802 Query 3561 -TGGGTCGAGGCTAGTCAGTACTACCCAGCTAGATACCAGACCCATATGCTCCTTGCTTC 3619 | || ||||| || |||| || ||||||||||||||| | ||| | | ||||| Sbjct 3801 CTTCGTGGAGGCCAGCGAGTATTATCCAGCTAGATACCAGTCACATCTCATGCTTGCAGT 3742 Query 3620 GGGAATCTCGGAACCAGGTGACTGTGGTGGTATCCTCAGGTGCCAGCATGG 3670 ||| ||||||||||| || || ||||| || || || ||||| ||||| Sbjct 3741 GGGTCATTCGGAACCAGGGGATTGCGGTGGCATTCTTAGATGCCAACATGG 3691 >seq1144 Length=1302 Score = 196 bits (216), Expect = 2e-46 Identities = 694/1063 (65%), Gaps = 31/1063 (3%) Strand=Plus/Plus Query 6216 AGCATGGAGGAAGCCATTTATGGCACGGAAGGCCTTGAAGCTCTGGATTTAACAACAAGT 6275 |||||||||||||| |||||||| ||| ||| || || | || | || ||| Sbjct 195 AGCATGGAGGAAGCGTGCTATGGCACTGAAAACCTGGAGGCAATTGACCTCTGCACTAGT 254 Query 6276 GCTGGATACCCTTATGTTACCATGGGGATAAAGAAGAGAGATATTCTAAACAAAGAAACC 6335 || || ||||| || || | || || ||||| ||||| ||||| || |||| Sbjct 255 GCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCTTGACCCCACAACC 314 Query 6336 AGAGATGTGAAGAAGATGCAAGAGTGCATTGACAAGTATGGATTGAACCTCCCTATGGTC 6395 || |||||| |||||| || | || || || || || | | || || || || Sbjct 315 AGGGATGTGTCTAAGATGAAATTCTATATGGATAAATACGGGCTAGATCTGCC-ATACTC 373 Query 6396 -ACATACATAAAGGATGAACTTAGATCCAAGGAGAAAGTGAAAAAGGGAAAGAGTAGACT 6454 || || | |||||||| ||||| ||| ||| ||| | || || |||||| | | Sbjct 374 TACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAAGAAAGGAAAGTCACGCTT 433 Query 6455 GATTGAAGCATCCAGTTTAAATGATTCTGTAGCCATGAGG-TGTTATTTTGGCAATTTGT 6513 ||| || || || || ||||| ||||| | | || || ||| |||| || | Sbjct 434 GATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAATGGCTTTTGGGCACCTT-T 492 Query 6514 ACAAGGCTTTCCACCAAAACCCAGGCACCCTAACTGGATGCGCTGTTGGATGTGACCCAG 6573 | |||| || || ||||| ||||| | ||||| | || || || ||| |||| | Sbjct 493 ATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGCAGTGGGTTGTAACCCGG 552 Query 6574 ATACCTTTTGGAGCAAGATTCCAGTAATGATGGATGGTGAGTTGTTTGGTTTTGATTACA 6633 | ||||||||||| | || | || || ||| | | |||| ||||| ||| Sbjct 553 ACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTCTTTGCCTTTGACTACT 612 Query 6634 CCGCTTATGATGCCAGCTTGTCTCCACTC---ATGTTTCAGGCTCTTCAGATG--GTTTT 6688 | | |||||||| || |||| | | ||| |||||| ||| ||| | || || Sbjct 613 CAGGATATGATGCTAG----TCTCAGCCCGGTATGGTTCAGGG-CTTTAGAAGTTGTGTT 667 Query 6689 GGAAAAGATTGG--ATTCGGAG-AGGGAAAGCACTTTATTGATAACCTGTGCTATTCGCA 6745 ||||||| |||| ||| ||| | | | || || | | | | || Sbjct 668 ACGGGAGATTGGGTATTCAGAGGAGGCCGTGTCCCTAATAGAAGGGATCAACCACACCCA 727 Query 6746 TCACCTTTTTAGAGACAAGTATTATTTTGTTAAGGGAGGAATGCCATCTGGTTGCTCTGG 6805 || | | | | |||| || | ||| || |||||||| || || || ||||| Sbjct 728 CCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGG 787 Query 6806 GACCAGCATTTTTAACTCAATGATAAACAACATCATTATCAGGACAGTTGTACTTCAGAC 6865 || ||| ||||| |||||||| ||||||||||| ||||| || || | | | || Sbjct 788 TACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAAC 847 Query 6866 CTACAAGGGGATTGAATTAGATCAACTGAAAATTATAGCGTATGGGGACGATGTCATCGC 6925 | ||||| || || | ||| | |||| || | || |||||||||||||| | || Sbjct 848 TTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGC 907 Query 6926 CAGTTACCCATACAGAATTGACCCAGCTGAATTGGCCAAAGCTGGGGCAAA-ACTA-GGT 6983 |||||||| | ||||| ||| ||||| || || |||||| | || ||| Sbjct 908 TAGTTACCCCTTTCCCATTGATTGCCTTGAGTTGGCTAAGACT--GGCAAAGAGTATGGT 965 Query 6984 CTTCACATGACTCCTCCAGACAAGTCGGAAACCTATGTAGATCTAG--AC-TGGACGAAT 7040 | |||||||||| ||||||| || | ||| | | || || || ||| ||| Sbjct 966 TTGACCATGACTCCTGCAGACAAATC---ACCCTGTTTCAATGAAGTAACATGGGAAAAT 1022 Query 7041 GTTACATTTTTAAAAAGAAACTTTGTGCCAGATGAGAAATACCCATTTCTTGTGCATCCG 7100 | ||| || | || ||| || ||||||| | ||| ||||| | | || || Sbjct 1023 GCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAATTCACCCT 1082 Query 7101 GTTATGCCCATGAAAGAGATTTACGAATCTATCAGGTGGACCAGAGATGCACGCAACACA 7160 |||||||||| |||||| | ||||| || | ||||| | ||| || |||||||| Sbjct 1083 ACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCGCAACACC 1142 Query 7161 CAAGATCATGTGCGTTCTCTGTGCCTGCTTGCATGGCATAATGGCAGAAAAGAGTACGAG 7220 |||||||| ||||| || ||||| ||| | |||||||| ||||| | | || || ||| Sbjct 1143 CAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGAATATGAG 1202 Query 7221 GAGTTT-TG-CCGCAAGATCAGATCAGTACCAGTTGGCAGAGC 7261 ||||| || ||| || |||||||| |||||||| | ||| Sbjct 1203 AAGTTTGTGAGTGCA--ATTAGATCAGTTCCAGTTGGAAAAGC 1243 >seq4341 Length=257 Score = 159 bits (176), Expect = 2e-35 Identities = 161/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 196 TCAAGCACTTCTGTTTCCCCGGACCTAGTAGTGATAGGCTGTACCCACGGCCGAAGATGA 255 ||||||||||||||||||||||||| |||| |||| ||| | | ||| |||| || Sbjct 206 TCAAGCACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCACGCGGTTGAAGGAGA 147 Query 256 ACCCGTCCGTTATCCGGCTACCTACTTCGGGAAGCCTAGTAACA-TTCTGAAGTCTCTGA 314 | ||||||||||||||||| |||||||| ||| | |||||||| ||||| | || Sbjct 146 AAGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGAAGCTGCAGA 87 Query 315 GGCGTTTCGCTCAGCACGACCCCGGTGTAGATCGGGCTGATGGGTCTCCGCATACCCCAC 374 | ||||||||| |||| |||| ||||||||| || |||| ||| | ||| |||||| Sbjct 86 -GTGTTTCGCTCGGCACTTCCCCCGTGTAGATCAGGTCGATGAGTCACTGCAATCCCCAC 28 Query 375 GGGCGACCGTGGCGGAGGCCGCGTTGG 401 ||| ||||||||| | ||| ||| ||| Sbjct 27 GGGTGACCGTGGCAGTGGCTGCGCTGG 1 >seq906 Length=2416 Score = 150 bits (166), Expect = 8e-33 Identities = 318/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 3321 TTTGGTCAGCAGAGTGGAGCCATTTATGTGGGCAATTACAAAATTATGAATAGACACCTT 3380 || || |||||| || ||||| || |||||||| | | | | | ||| | ||||| Sbjct 63 TTCGGCCAGCAGTCCGGGGCCATCTACGTGGGCAACTTTAGAGTGGTTAATCGTCACCTC 122 Query 3381 GCAACCCATGAAGATTGGGAAAATGTAGAGTGGGAAGATTACAACAGAGA--TATTCTTG 3438 || || ||| | || |||| || | | |||||||| | | | || |||| || Sbjct 123 GCTACTCATAATGACTGGGCGAACCTCGTCTGGGAAGACAGCTCCCGCGACCTATTAGTG 182 Query 3439 TGG-CTAGAACCACCGCCCATGGTGCTGACAAGCTTGCCAGATGTCACTGCAACACCGGA 3497 | | ||| ||||||| || || ||| | |||| | ||| |||| | || ||| Sbjct 183 TCGTCTA---CCACCGCTCAGGGCTGTGATACAATTGCACGTTGTGACTGTCAAACAGGA 239 Query 3498 GTATATTACTGTAAGTCCAGGAACAAGCACTACCCAGTAA-CTTTCCAGGGTCCAGGCAT 3556 || ||||| || || |||| || |||||||| ||||| | |||| | |||| | | Sbjct 240 GTGTATTATTGCAATTCCAAGAGAAAGCACTATCCAGTCAGCTTTTCTAAACCCAGCC-T 298 Query 3557 CGATTGGGTCGAGGCTAGTCAGTACTACCCAGCTAGATACCAGACCCATATGCTCCTTGC 3616 | | || || ||||| |||| ||||| ||||||||||| | || || | ||||| Sbjct 299 CATATATGTGGAAGCTAGCGAGTATTACCCTGCTAGATACCAATCGCACCTGATGCTTGC 358 Query 3617 TTCGGGAATCTCGGAACCAGGTGACTGTGGTGGTATCCTCAGGTGCCAGCATGGAGTGAT 3676 |||| ||| || || || ||||| || || ||| | ||||| || ||||| || | Sbjct 359 AGCGGGCCACTCTGAGCCCGGCGACTGCGGAGGCATCTTAAGGTGTCAACATGGTGTAGT 418 Query 3677 CGGTGTTGTGACTGCTGGGGGCCAGGGAGTGGTTGGATTTGCTGATGTGCGCGACCTCTT 3736 ||| | ||| | | || ||| | || | |||||||||||||||||| | || ||||| Sbjct 419 TGGTATAGTGTCCACGGGTGGCAACGGGCTCGTTGGATTTGCTGATGTGAGGGATCTCTT 478 Query 3737 CTGGGTTGAGCATGAAGCAATGGAACAAGGCCTTACTGATTACATTCAG 3785 ||| | || | || || ||||| ||||| | | || |||||| || Sbjct 479 GTGGTTAGATGAAGAGGCTATGGAGCAAGGTGTGTCCGACTACATTAAG 527 Score = 145 bits (160), Expect = 4e-31 Identities = 230/330 (70%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 4362 GTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAGTTCAAGAGCAAGCAACGGATT 4421 ||||||| |||| |||||||| ||||| |||||||||||||| || || ||| Sbjct 1104 GTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATT 1163 Query 4422 GAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACTGGAAAATCACTTGCTACATCC 4481 || |||||||||||| | ||| ||| || | ||||||||||| || ||||| || Sbjct 1164 GAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGT 1223 Query 4482 ATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAAGTTTATGCGATTCCTCCAGAC 4541 || |||| | ||||||| | | ||||| || || | |||| |||||| Sbjct 1224 ATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTGTACTCACTTCCACCAGAC 1283 Query 4542 AGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTAGTTATGGATGATCTCAACCAG 4601 ||||||||||||||| || | ||||| | || ||||||||||||||| || Sbjct 1284 CCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAA 1343 Query 4602 AACCCGGATGGGAAAGATATGGTTGCTTTTTGTCAAATGGTCTCCACCGTGCCTTACCAT 4661 ||||| || || ||||| ||| ||||| || ||||| ||||||||| || Sbjct 1344 AACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATC 1403 Query 4662 GTACCTATGGCTGCCATTGAAGAGAAGGGA 4691 ||| |||||| | | ||||| |||||| Sbjct 1404 CCACCAATGGCTTCTCTCGAAGAAAAGGGA 1433 >seq945 Length=2018 Score = 138 bits (152), Expect = 5e-29 Identities = 341/515 (66%), Gaps = 22/515 (4%) Strand=Plus/Minus Query 872 AGGCTCCCACATAAATTACACCAACATTAACTACTACAGTCACTCC------GCGAGCGC 925 ||||||| ||| |||||||| | ||| ||||| |||| ||||| |||| || Sbjct 1759 AGGCTCCACCATTAATTACACTACCATCAACTATTACAAAGACTCCTATGCTGCGACAGC 1700 Query 926 TAGTCAAAATAAACAAGACATCACTCAAGATCCTAGCAAATTTACTCAACCTATGGTAGA 985 || ||||| | ||| ||||| ||| || ||| || | ||| | ||| Sbjct 1699 GGGT------AAACAGAGCCTCAAACAAGACCCTGATAAGTTTGCTAACCCTGTCAAAGA 1646 Query 986 TATCATGAAAGAATCTGCCGTCCCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAG 1045 || | | ||| || | || | ||||| ||||| || || |||||||||||||| Sbjct 1645 CATTTTCACTGAAATGGCTGCGCCACTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAG 1586 Query 1046 TGATAGGGTGGCTCAATTGACCTTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAA 1105 |||| | ||||| ||| | ||| | || ||| ||| || ||||| || ||||| || || Sbjct 1585 TGATCGCGTGGCACAACTCACCATTGGGAACTCCACCATTACTACACAGGAGGCGGCAAA 1526 Query 1106 CATCACAGTTGCCTATGGTGAATGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGT 1165 ||||| ||| | || ||||| ||||| || |||| |||| || || || || || Sbjct 1525 CATCATAGTCGGTTACGGTGAGTGGCCCTCATACTGCTCTGATGACGACGCCACAGCGGT 1466 Query 1166 AGACAAGACTACCAAACCAGGCGTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGA 1224 ||||| | || |||| ||||| ||| |||| || || ||| ||||| | Sbjct 1465 GGACAAACCAACGCGCCCAGATGTTTC-GGTGAATAGGTTTTATACA----CTGGACACT 1411 Query 1225 AA----TGGGAGGCAACTACTAAAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAG 1280 || ||||| | |||| || ||| | ||||| |||| || | |||| ||| Sbjct 1410 AAACTGTGGGAAAAGTCATCTAAGGGTTGGTATTGGAAGTTTCCTGATGTGTTGACTGAG 1351 Query 1281 CTTGGCGTTTTTGGACAGAATTGTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATA 1340 || || ||||| ||||| ||||| || | || ||||| | |||| | || Sbjct 1350 ACCGGAGTCTTTGGCCAGAACGCACAGTTTCACTATTTGTATAGATCAGGGTTTTGCATT 1291 Query 1341 CACGTGCAATGTAATGCCACGAAGTTTCATCAGGG 1375 || ||||||||||| || | ||||| ||||| || Sbjct 1290 CATGTGCAATGTAACGCTAGCAAGTTCCATCAAGG 1256 Score = 96.9 bits (106), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 579 CTTTGGGTGTCCGTGTTTCCTTTTGATCCTATTTTGGCTGCTTATGGTGACAACGATA-A 637 || ||||||||||||||||||||| || ||| |||||||||||||||||||| | | | Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATTACAGA 1959 Query 638 GTTGTTATCATAAAGCTCTTGGGTTGGCCA 667 |||||| |||| |||| |||| ||||||| Sbjct 1958 ATTGTTACCATATAGCTATTGGATTGGCCA 1929 >seq3031 Length=367 Score = 87.8 bits (96), Expect = 8e-14 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 5766 GGAAGTCCAACTCACCGAACCATGATGTACAACTTCCCAACTAAAGCGGGACAGTGTGGT 5825 |||| ||||| || | |||||||||||||| ||||| || ||||| ||||||||||| Sbjct 106 GGAAAGCCAACCCATAGGACCATGATGTACAATTTCCCTACAAAAGCAGGACAGTGTGGA 165 Query 5826 GGAGTGGTTCTTTCTACAGGGAAAGTGCTAGGTATCCACATTGGGGGAAACGGTGCACAA 5885 || ||||| || || || | | || || |||||||| || ||||| ||| Sbjct 166 GGTGTGGTCACGTCAGTCGGTAAGATTGTTGGCATTCACATTGGCGGCAACGGGCGCCAA 225 Query 5886 GGATTCTGTGCTGCCTTGAAAAG 5908 || |||||||||| ||||| || Sbjct 226 GGGTTCTGTGCTGGTTTGAAGAG 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23525012589376