Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_006553.1
Length=8289
Score E
Sequences producing significant alignments: (Bits) Value
seq1144 78.8 5e-11
>seq1144
Length=1302
Score = 78.8 bits (86), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 7452 GGTGGAATGCCATCAGGGTGCTCGGGAACCTCCATCTTCAATTCAATCATTAATAACATC 7511
||||||||||| ||||| || || || || |||||||| |||||||| || || ||||||
Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821
Query 7512 ATTGTGAGAACTCTGGTCTTGGACACCTACAAAGGTATCGATCTCGACCAACTCCGTATT 7571
|| | ||||| || | | | || | || || || || || || | | ||
Sbjct 822 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 881
Query 7572 CTGGCCTACGGTGATGACCTACTGGTGTCCTATCCATTTCCACTTGA---CCCAGAGGCA 7628
||||||| || || || | |||| || || ||||| |||| || |||
Sbjct 882 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAG--- 938
Query 7629 TTAGCAAGGGCTGGAAAGGTGTATGGTCTTAAAATGACACCTGCAGACAA 7678
|| || | | |||| || | ||||||| | | ||||| |||||||||||
Sbjct 939 TTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAA 988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 26408042559864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |