Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_008714.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq1144 205 4e-49 seq643 170 9e-39 seq906 156 2e-34 seq945 82.4 4e-12 >seq1144 Length=1302 Score = 205 bits (226), Expect = 4e-49 Identities = 796/1227 (65%), Gaps = 37/1227 (3%) Strand=Plus/Plus Query 6026 TGATGTTTTCCCCGGTGAAAAAGAACCAGCTGTTCTTCACAAG-AAAGACAAAAGACTTG 6084 |||||| || ||| | || |||||||| ||| || ||||| |||||| ||| | | Sbjct 2 TGATGTGTTTGAAGGTAATAAGGAACCAGCAGTT-TTAACAAGTAAAGACCCTAGATTGG 60 Query 6085 AAGTTGACTTTGAGGAAGCACTCTTTTCAAAATATATTGGCAACATTG---ATAAGCCAG 6141 | || |||||||| |||| || ||||| || ||| | ||||| || | |||| | Sbjct 61 AGGTCGACTTTGAACAAGCCCTGTTTTCCAAGTATGTGGGCAATGTTTTACACGAGCCCG 120 Query 6142 -TGACAGAGGAGA-TGGAGATAGCCATTGACCATTATGCAAATCAATTGAAGCAACTGAA 6199 ||| | | | || | || | ||| | ||| || || |||||| | || ||| || | Sbjct 121 ATGA-ATATGTGACTCAAGCT-GCCCT---CCACTACGCGAATCAACTTAAACAATTGGA 175 Query 6200 TATTGACCCTACACCAATCAGTATGGAGGAAGCCATTTACGGCACTGAAGGGTTAGAGGC 6259 || || ||| || || ||||||||||| || ||||||||| | ||||| Sbjct 176 CATAAACACTAGCAAGATGAGCATGGAGGAAGCGTGCTATGGCACTGAAAACCTGGAGGC 235 Query 6260 CCTTGATCTTGGGACCAGCGCGGGGTACCCCTATGTGGCTTTAGGAATCAAAAAGAGGGA 6319 |||| || | || || || |||||||| || || | || ||||| || || || Sbjct 236 AATTGACCTCTGCACTAGTGCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGA 295 Query 6320 TATACTCAATAAGGAAACAAGAGACACTTCCAAGATGCAACAATGTATAGAAAAGTATGG 6379 || || | ||| || || || |||||| || | ||| || || || || Sbjct 296 CATTCTTGACCCCACAACCAGGGATGTGTCTAAGATGAAATTCTATATGGATAAATACGG 355 Query 6380 ACTCAATTTACCAATGGTTACCTATGTGAAGGACGAGCTCCGCTCAAAAGAGAAGGTGAA 6439 || || | ||| ||||||||||||||| ||||| | || || || | || Sbjct 356 GCTAGATCTGCCATACTCTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAA 415 Query 6440 GAAGGGCAAGAGCCGGCTTATTGAGGCGTCAAGCCTGAATGATTCCGTCGCAATGAGATG 6499 ||| || ||| || | || ||||| ||| ||||||| || ||| | ||| Sbjct 416 GAAAGGAAAGTCACGCTTGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAAT 475 Query 6500 TGCTTTTGGAAATCTATACAGGGCATTCCACACCAACCCAGGCACATTGACTGGCTGTGC 6559 |||||||| | || || ||| || || | ||||| ||||| ||||||||| || Sbjct 476 GGCTTTTGGGCACCTTTATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGC 535 Query 6560 TGTAGGCTGTAACCCTGAGACATTTTGGAGCAAGATACCAGTAATGATGGATGGGGAGCT 6619 || || |||||||| || ||||||||||| |||| | || || |||| ||| Sbjct 536 AGTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCT 595 Query 6620 ATTTGGATTTGATTACACTGCTTATGATGCTAGCCTCTCCCCTGTATGGTTTAAGTGTCT 6679 |||| ||||| ||| | | ||||||||||| ||| ||| |||||||| | | | | Sbjct 596 CTTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTTT 655 Query 6680 -CAATTTGCTCCTCGAGAAGATAGGATTTGGGCATTGTAAGC-----ACTTCATAGATCA 6733 || ||| | | | |||| || | | || | | || | | ||||| Sbjct 656 AGAAGTTG-TGTTACGGGAGATTGGGTAT--TCAGAGGAGGCCGTGTCCCTAATAGAAGG 712 Query 6734 ATTATGTTATTCTAATCATCTGTATATGGATAAGAGATATGTTGTAGCAGGGGGTATGCC 6793 | | | | ||| ||||| | | || | ||| |||| || || ||||| Sbjct 713 GATCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCC 772 Query 6794 CTCTGGTTGCTCAGGCACCAGTATATTCAATAGCATGATTAACAATCTTATCATTAGGAC 6853 ||| || || || || || || || ||| ||||| ||||| | ||||| || || Sbjct 773 CTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAAC 832 Query 6854 CCTTGTTTT---AACTGTTTACAAAAATATTGACTTGGATGACCTGAAGATTATAGCCTA 6910 |||| | | |||| |||| |||| ||| ||||||| |||| || | ||||| Sbjct 833 CCTTTTGATCAAAACT-TTTAAGGGAATA--GACCTGGATGAGTTGAACATGGTGGCCTA 889 Query 6911 TGGTGATGACGTTATTGCCTCATACCCATTTGAGCTTGA-CGCC--AAGTTGCTCGCGGA 6967 ||| || || || | || ||||| ||| |||| ||| ||||| || | Sbjct 890 TGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGTTG---GCTAA 946 Query 6968 TGCGGGC-AAGAGCTTTGGCCTAATCATGACACCTCCAGACAAGAGCAGTGAGTTTGTA- 7025 | ||| ||||| | ||| | | |||||| ||| ||||||| | || |||| | Sbjct 947 GACTGGCAAAGAG-TATGGTTTGACCATGACTCCTGCAGACAA-ATCACCCTGTTTCAAT 1004 Query 7026 AAATTGACCTGGGACAATGTTACTTTTTTGAAGAGATCATTTGTTAAGGACGAACGCTTC 7085 || | || ||||| |||| ||| || |||||||| ||| | ||| | | || Sbjct 1005 GAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTT 1064 Query 7086 CCATTTTTGATTCATCCGGCCATGAAAATGACAGACATTCATGAATCCATTCGTTGGACC 7145 ||||| || ||||| || | ||| |||| ||| || |||||||||||||| ||||| Sbjct 1065 CCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACT 1124 Query 7146 AAGGACGCAAAATCCACCCAGGACCATGTGAGATCACTGTGCCTATTGGCTTGGCACTGT 7205 || ||||| |||||| || || ||| | || ||||| || ||||| |||||| | Sbjct 1125 AAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAAT 1184 Query 7206 GGAGAGAAACAATATGAAGAGTTTCTG 7232 || || | ||||||| ||||| || Sbjct 1185 GGTAAGGATGAATATGAGAAGTTTGTG 1211 >seq643 Length=7254 Score = 170 bits (188), Expect = 9e-39 Identities = 932/1463 (64%), Gaps = 53/1463 (4%) Strand=Plus/Minus Query 5768 TGGAAGGCCTACTCATCGCACACTCATGTACAATTTCCCCACGCGAGCTGGACAGTGTGG 5827 ||| | ||| ||||| | || | |||||||||||||| || ||| ||||||||||| Sbjct 1570 TGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGG 1511 Query 5828 CGGAGTAGCCATTTCAATGGGAAAAGTAATAGGGATCCATATTGGAGGCAACGGGGCACA 5887 || || | | | | |||| ||||| || |||||||| ||||| |||||||| || Sbjct 1510 TGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCA 1451 Query 5888 GGGCTTCGCAGCAGCTCTACTTCGTAGGTA-TTTTACACAGCCCCAAGGTAAGATTGAGT 5946 || ||| || || || | | || |||| || | | ||||| |||| | | Sbjct 1450 AGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGAAC-AAGGTGAGATCCAAT 1392 Query 5947 TAGTGGAGAAAAGTAAGGAC----GCAGGATATCCTATCATTAATGCACCAACCAAGACC 6002 || || | || || ||||| | | ||| || | ||| || || Sbjct 1391 GGATGAAGCCCAACAAAGAAACTGGCAGGTTG----AACATCAACGGACCTACTCGCACA 1336 Query 6003 AAGCTTTACCCTAGTGTGTTCTTTGATGTTTTCCCCGGTGAAAAAGAACCAGCTGTTCTT 6062 |||||| | || ||||| || ||||| ||| || ||||| ||||| || || Sbjct 1335 AAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTG 1276 Query 6063 CACAAG-AAAGACAAAAGACTTGAAGTTGACTTTGAGGAAGCACTCTTTTCAAAATATAT 6121 || || |||||| ||| || |||||||||||||| | || || ||||||||||| | Sbjct 1275 -ACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGT 1217 Query 6122 TGGCAACA---TTGATAAGCCAGTGACAGAG---GAGATGGAGATAGCCATTGACCATTA 6175 || |||| || || | || | || ||| | | |||| ||| | ||||| Sbjct 1216 GGGGAACACGCTTCATGAACCCG--AC-GAGTTTGTCAAGGAGGCGGCCTTA---CATTA 1163 Query 6176 TGCAAATCAATTGAAGCAACTGAATATTGACCCTACACCAA--TCAGTATGGAGGAAGCC 6233 ||| || ||| | ||||| | |||| | | |||||| | || |||||||| || Sbjct 1162 TGCCAACCAACTCAAGCAGTTAGATATCAAGAC--CACCAAGATGAGCATGGAGGATGCA 1105 Query 6234 ATTTACGGCACTGAAGGGTTAGAGGCCCTTGATCTTGGGACCAGCGCGGGGTACCCCTAT 6293 ||||||||| || | || || | |||||| || || || || || || || Sbjct 1104 TGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATAC 1045 Query 6294 GTGGCTTTAGGAATCAAAAAGAGGGATATACTCAATAAGGAAACAAGAGACACTTCCAAG 6353 || |||| ||||| || | ||| || | || ||| | || |||| Sbjct 1044 AGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAG 985 Query 6354 ATGCAACAATGTATAGAAAAGTATGGACTCAATTTACCAATGGTTACCTATGTGAAGGAC 6413 ||| || | || || |||||||| | || |||| ||| ||||| || || Sbjct 984 ATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGAT 925 Query 6414 GAGCTCCGCTCAAAAGAGAAGGTGAAGAAGGGCAAGAGCCGGCTTATTGAGGCGTCAAGC 6473 || || | | | || ||| | ||||| || ||| || || || || ||| ||| Sbjct 924 GAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGC 865 Query 6474 CTGAATGATTCCGTCGCAATGAGATGTGCTTTTGGAAATCTATACAGGGCATTCCACACC 6533 || ||||| || || ||||| | ||||| | || || || |||||| || Sbjct 864 CTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCC 805 Query 6534 AACCCAGGCACATTGACTGGCTGTGCTGTAGGCTGTAACCCTGAGACATTTTGGAGCAAG 6593 || ||||| ||| | || || | ||||| || || ||||| || || ||||||||| Sbjct 804 AATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAG 745 Query 6594 ATACCAGTAATGATGGATGGGGAGCTATTTGGATTTGATTACACTGCTTATGATGCTAGC 6653 ||||| | | | || ||| || | ||||| ||| | | ||||| ||||| Sbjct 744 TTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGT 685 Query 6654 CTCTCCCCTGTATGGTTTAAGTGTCTCAATTTGCTCCT-CGAGAAGATAGGAT--TTGG- 6709 ||| ||| || ||||| | | || | | |||| || ||| || |||| | | Sbjct 684 CTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAA-ATTGGATACTCCGA 626 Query 6710 ----GCATTGTAAGCACTTCATAGATCAATTATGTTATTCTAATCATCTGTATATGGATA 6765 ||| ||| | || |||||| | | | | ||||| |||| ||| Sbjct 625 AGACGCAGTGT---CTCT-CATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATA 570 Query 6766 AGAGATATGTTGTAGCAGGGGGTATGCCCTCTGGTTGCTCAGGCACCAGTATATTCAATA 6825 | | ||| ||| ||||| |||||||| ||||||||||||||| || ||||| Sbjct 569 AAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACT 510 Query 6826 GCATGATTAACAATCTTATCATTAGGACCCT--TGTTTTAACTGTTTACAAAAATATTGA 6883 ||||| |||||| | || ||||| || || || || || || |||| || || Sbjct 509 CGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATT--CAAAGGGATAGA 452 Query 6884 CTTGGATGACCTGAAGATTATAGCCTATGGTGATGACGTTATTGCCTCATACCCATTTGA 6943 | ||||| ||||| || | ||||| || ||||| || | || ||||| || Sbjct 451 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCC 392 Query 6944 GCTTGAC-GCCA--AGTTGCTCGCGGATGCGGGCAAGAGCTTTGGCCTAATCATGACACC 7000 ||||| | | ||||| | | | | |||||| | ||| |||| ||||| || Sbjct 391 AATTGACTGTCTGGAGTTGG-CAAGAA--CAGGCAAGGAGTATGGTCTAACTATGACCCC 335 Query 7001 TCCAGACAAGAG-CAGTGAGTTTGTAAAATTGACCTGGGACAATGTTACTTTTTTGAAGA 7059 | | |||||| | || || | | || || ||||| |||| ||||| ||||||| Sbjct 334 TGCCGACAAGTCACCCTGCTTTAATGAGGTT-ACATGGGAGAATGCCACTTTCTTGAAGA 276 Query 7060 GATCATTTGTTAAGGACGAACGCTTCCCATTTTTGATTCATCCGGCCATGAAAATGACAG 7119 || ||| | || | | ||||| ||| | || || || | ||| ||||| | Sbjct 275 GAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGG 216 Query 7120 ACATTCATGAATCCATTCGTTGGACCAAGGACGCAAAATCCACCCAGGACCATGTGAGAT 7179 | ||||| |||||||||||||||||||| || ||| | || || || || ||| | | Sbjct 215 AGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCT 156 Query 7180 CACTGTGCCTATTGGCTTGGCAC 7202 | || ||| |||| || |||||| Sbjct 155 CCCTCTGCTTATTAGCATGGCAC 133 Score = 136 bits (150), Expect = 2e-28 Identities = 504/787 (64%), Gaps = 2/787 (0%) Strand=Plus/Minus Query 3947 TGATATTGTTACAGTTACCGCCACTCTATCGCTATTGGGGTGCACCGGTTCCCCCTGGCG 4006 ||| || || ||| | || || || || | || | |||||| ||| ||| ||| Sbjct 3379 TGACATGGTCACATTGACGGCAACACTTGCCCTGATCGGGTGCCACGGGAGCCCTTGGGC 3320 Query 4007 CTGGCTCAAGGCAAAGATTTGCTCAATCCTAGGGATCAACATGGCCCAAAAACAGGCTGA 4066 |||| | ||| | |||| ||||| | || || ||||| || || ||| || Sbjct 3319 CTGGGTTAAGTCGAAGACAGCATCAATTTTGGGCATACCGATGGCTCAGAAGCAGAGTGC 3260 Query 4067 CAGTTGGATAAAGAAGTTTACTGAGGCAGTTAATGCCTTCAAGGGACTAGATTGGATAGC 4126 | |||| |||||||||| | || || | | |||| ||||| || || ||||| | Sbjct 3259 CTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTC 3200 Query 4127 AGCTAAATTCAGTAAATTTCTTGATTGGATCAAGTCAAAGATCATCCCTGAACTTAAGGA 4186 ||| ||||||||||| | |||||| ||||| || ||||| || | ||| || Sbjct 3199 CAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGA 3140 Query 4187 GAGAACTGAGTTTTTGAAAAACCTGAGGCAACTACCACTCCTTGAGGCTCAAATTGCAAC 4246 || | |||||| | || || || | |||||| || | | ||| |||||| | | Sbjct 3139 GAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTCTAA 3080 Query 4247 ACTGGAACACTCCAACCCCACCCAAGAGACTCAAGAGATCCTGTTCTCAAATGTCCAGTA 4306 || ||||| || | | || ||| | ||| |||| || || || Sbjct 3079 TCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTA 3020 Query 4307 CCTTGCTCACCATTGCAGGAAGAATGCA-CCTTTATATGCCGCGGAGGCTCGCCGAGTCT 4365 ||| || ||| ||| | || | | || || | |||||| |||| || | || | Sbjct 3019 CCTGGCCCACTTCTGCCGCAA-ATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGT 2961 Query 4366 TTGCGCTTGAGAAACGTGTGTTGGGCGCAATGCAGTTCAAGACCAAGAATCGAATTGAAC 4425 || || || || | || ||||||||||||| ||| | || ||||||| Sbjct 2960 ACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGAAC 2901 Query 4426 CTGTTTGCTGCCTAATCCATGGTTCTCCTGGCACAGGTAAGTCACTTGCTACATCAATCA 4485 |||| ||| | ||| || || ||||| || || |||||| | || ||| || | Sbjct 2900 CTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTA 2841 Query 4486 TTGGCAGAAGAATAGCTGAATATGAGAACAGTGGGGTATATAGTCTTCCACCCGACCCAA 4545 ||| ||| ||||| || | | || | || ||| | || || |||||| Sbjct 2840 TTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACCCAG 2781 Query 4546 ACCACTTTGACGGTTACCAAGAACAGGCTGTTGTTGTAATGGATGATCTACTCCAAAACC 4605 ||||||||||||| ||| || ||||| || ||| ||||| || ||| |||||||| Sbjct 2780 ACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACC 2721 Query 4606 CAGATGGTAAGGACATGAGCTTATTTTGTCAAATGGTTTCCACCGTCCCTTTCGTTGTTC 4665 |||| || || |||||| |||||||||| ||||| ||||| || ||| | | Sbjct 2720 CAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGC 2661 Query 4666 CTATGGCTGCACTTGAAGACAAAGGTAGGTTGTTCACATCAAAGTACGTGTTGGCTTCAA 4725 ||||||| | || || || || || | ||||| || |||| ||| | || || | Sbjct 2660 CTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCA 2601 Query 4726 CCAACGC 4732 | ||||| Sbjct 2600 CTAACGC 2594 Score = 105 bits (116), Expect = 3e-19 Identities = 299/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 945 AAGCAAGACCTTACGCAAGACCCCGAAAAATTTACCCGCCCTGTGGTAGATATGATGAAG 1004 ||||| ||||| ||| ||||| || || ||| | ||||| ||| || | | Sbjct 6506 AAGCAGAGCCTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACT 6447 Query 1005 GAAGCTGCAGTGCCGCTGAAAAGTCCATCTGCCGAAGCTTGTGGCTATAGCGATAGAGTC 1064 ||| |||| ||| | ||| ||||||||| || || ||||| || || ||| | || Sbjct 6446 GAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTG 6387 Query 1065 GCCCAATTGACGCTCGGCAACTCGACCATTACCACACAAGAAGCTGCAAATATCGTTGTG 1124 || ||||| || | ||||| || ||||| || || |||||||| ||||| ||| | || Sbjct 6386 GCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTT 6327 Query 1125 GCATATGGAAGGTGGCCGTCCAACCTGAGAGACACCGATGCCACTGCTGTTGATAAGCCC 1184 | ||||| |||||| ||| || ||| | ||||||||||| || || || || Sbjct 6326 GGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCA 6267 Query 1185 ACCCAACCCGGTGTGTCAGCAGAGCGCTTCTACACTTT--ACCATCTGTTCAGTGGACTA 1242 || | || | ||| || | | | || ||||| || || || |||| | Sbjct 6266 ACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATT--GTGGGAGA 6209 Query 1243 CTACCTTCAAGGGCCATTACTGGAAACTACCTGACGCCCTGTCTGAATTGGGACTTTTTG 1302 | | |||||| ||||||||| | || || | | ||||| || | |||| Sbjct 6208 AGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTG 6149 Query 1303 GCCAAAATCTTCAATTCCATTATCTCTA-CAGAGGTGGATGGGCAATCCACGTTCAGTGT 1361 | |||||| || ||||| || ||||| | | || | || || ||||| ||||| Sbjct 6148 GTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTGCAGTGC 6090 Query 1362 AATGCAACCAAATTCCACCAGGGTACGCTCCTCGT 1396 ||||| | || |||||||| || | ||||| || Sbjct 6089 AATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGT 6055 Score = 102 bits (112), Expect = 4e-18 Identities = 117/152 (77%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 497 AAGAGCCTATTGTGCTGGTTTGGTTATCCTCCGGAGCCGTGAATGCTGCTAATCCTAACC 556 |||||||||||| ||| | | ||| |||||||| || ||||||| |||||||||||| Sbjct 6955 AAGAGCCTATTGAGCTAGCT-GGTAGTCCTCCGGCCCC-TGAATGCGGCTAATCCTAACT 6898 Query 557 CCCAAGCGTGTGCGCACAAACCAGT-GTTGCTACGTCGTAACGCGTAAGTTGGAGGCGGA 615 | ||| ||| ||| ||||||| | || | ||||||||| | || | | ||||| Sbjct 6897 GCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGA 6838 Query 616 ACAGACTACTTTCGGTACTCCGTGTTTCCTTT 647 || ||||||||| ||| |||||||||||||| Sbjct 6837 ACCGACTACTTTGGGT-GTCCGTGTTTCCTTT 6807 Score = 82.4 bits (90), Expect = 4e-12 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 2036 TGGGCCACTACAGTCCACCTTGCTTGGTGTTTTCACTCGCTATTATACACAATGGTCTGG 2095 ||||||| |||||||||||| | || || | || || || |||||||| || Sbjct 5385 TGGGCCATGGCAGTCCACCTTGTTGGGCCAGTTGTGCGGGTACTACACCCAATGGTCAGG 5326 Query 2096 ATCACTTGAATTCACCTTTATGTTTTGTGGGACATTCATGACAACTGGAAAGGTTATTAT 2155 |||||| ||| ||||||| ||||| ||| | || ||| | || || ||| | | || Sbjct 5325 ATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATGGCTACCGGCAAGATGCTCAT 5266 Query 2156 AGCCTATACGCCACCCGGAGGTGATCAACCGGAGAGCAGGCAGCAGGCCATGCTTGGAAC 2215 ||| || || ||||| ||||| ||| || | || | |||||| | || || Sbjct 5265 AGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCGGGCGACCGCCATGTTGGGCAC 5206 Query 2216 ACATGTCGTGTGGGACTTTGGCTTACAATCCTCCATTACTCTCGTGGTCCCTTGGATC 2273 || ||| | ||||||||||| | ||||| || | || || || | || |||||| Sbjct 5205 GCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCACCCTTGTAATACCATGGATC 5148 >seq906 Length=2416 Score = 156 bits (172), Expect = 2e-34 Identities = 561/869 (65%), Gaps = 10/869 (1%) Strand=Plus/Plus Query 3878 GGTTGAGAAAATTATAAGAAATGTCATTAGGTTGCTATCTGCCTTAGTCATAGTGGTTAA 3937 |||||||||||| ||| || | |||| | || | || || ||||| || ||| | | Sbjct 620 GGTTGAGAAAATCCTAAAGAACCTTATTAAGCTGATTTCAGCGTTAGTAATTGTGATCAG 679 Query 3938 AAACCCCAGTGATATTGTTACAGTTACCGCCACTCTATCGCTATTGGGGTGCACCGGTTC 3997 | | |||||| || || | || || ||| || | || | || || ||| Sbjct 680 GAGCGATTATGATATGGTCACCCTCACAGCAACTTTAGCCCTGATTGGTTGTCACGGAAG 739 Query 3998 CCCCTGGCGCTGGCTCAAGGCAAAGATTTGCTCAATCCTAGGGATCAACATGGCCCAAAA 4057 || ||| ||| | || || |||| || ||| |||| ||| ||| ||||| || Sbjct 740 TCCTTGGGCTTGGATTAAAGCCAAGACAGCATCCATCTTAGGTATCCCCATCGCCCAGAA 799 Query 4058 ACAGGCTGACAGTTGGATAAAGAAGTTTACTGAGGCAGTTAATGCCTTCAAGGGACTAGA 4117 ||| || |||| ||||||| |||| ||| | | |||| |||||| |||| Sbjct 800 GCAGAGTGCTTCTTGGCTAAAGAAATTTAATGATATGGCGAGTGCCGCCAAGGGTTTAGA 859 Query 4118 TTGGATAGC-AGCTAAATTCAGTAAATTTCTTGATTGGATCAAGTCAAAGATCATCCCTG 4176 |||||| | | | ||||| ||||| || |||| ||| ||| | ||||| | || | Sbjct 860 ATGGATATCCAACAAAATT-AGTAAGTTCATTGACTGGCTCAGGGAGAAGATTGTTCCAG 918 Query 4177 AACTTAAGGAGAGAACTGAGTTTTTGAAAAACCTGAGGCAACTACCACTCCTTGAGGCTC 4236 | ||||||| | | || ||||| | || ||| |||| | ||||| | ||| | Sbjct 919 CAGCCAAGGAGAAAGCAGAATTTTTAACCAATTTGAAGCAATTGCCACTGTTAGAGAACC 978 Query 4237 AAATTGCAACACTGGAACACTCCAACCCCACCCAAGAG-AC--TCAAGAGATCCTGTTCT 4293 | || | | | || || ||| || | |||||| || | ||| || ||| Sbjct 979 AGATCACGAACTTAGAGCAGTCCGCTGCCTCACAAGAGGACCTTGAAGCTAT---GTTTG 1035 Query 4294 CAAATGTCCAGTACCTTGCTCACCATTGCAGGAAGAATGCACCTTTATATGCCGCGGAGG 4353 ||||| ||||| || || || | ||| ||| ||||| ||| |||| | Sbjct 1036 GGAATGTGTCATACCTCGCCCATTTCTGTCGCAAGTTCCAACCATTATACGCCACGGAAG 1095 Query 4354 CTCGCCGAGTCTTTGCGCTTGAGAAACGTGTGTTGGGCGCAATGCAGTTCAAGACCAAGA 4413 || ||||||| || || ||||| | || | ||||||||||||| ||| Sbjct 1096 CTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAAC 1155 Query 4414 ATCGAATTGAACCTGTTTGCTGCCTAATCCATGGTTCTCCTGGCACAGGTAAGTCACTTG 4473 | || ||||||||||| || | | || || || || ||||| || ||||| |||| Sbjct 1156 ACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTG 1215 Query 4474 CTACATCAATCATTGGCAGAAGAATAGCTGAATATGAGAACAGTGGGGTATATAGTCTTC 4533 | || ||||||| | ||||| || | | || | | || || |||| Sbjct 1216 CGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTGTACTCACTTC 1275 Query 4534 CACCCGACCCAAACCACTTTGACGGTTACCAAGAACAGGCTGTTGTTGTAATGGATGATC 4593 |||| ||||| |||| |||||||| || || | || | || || |||||||||| Sbjct 1276 CACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGATC 1335 Query 4594 TACTCCAAAACCCAGATGGTAAGGACATGAGCTTATTTTGTCAAATGGTTTCCACCGTCC 4653 | |||||||| || || || |||||| |||||||| || ||||| |||||||| Sbjct 1336 TGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACCGTGG 1395 Query 4654 CTTTCGTTGTTCCTATGGCTGCACTTGAAGACAAAGGTAGGTT-GTTCACATCAAAGTAC 4712 ||| | || |||||| | || ||||| ||||| || || |||||||| || | Sbjct 1396 ATTTTATCCCACCAATGGCTTCTCTCGAAGA-AAAGGGAGTTTCCTTCACATCTAAATTT 1454 Query 4713 GTGTTGGCTTCAACCAACGCAAACACCAT 4741 || | || || |||||||| | || ||| Sbjct 1455 GTTATCGCATCCACCAACGCTAGCAACAT 1483 >seq945 Length=2018 Score = 82.4 bits (90), Expect = 4e-12 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 960 CAAGACCCCGAAAAATTTACCCGCCCTGTGGTAGATATGATGAAGGAAGCTGCAGTGCCG 1019 |||||||| || || ||| | |||||| ||| || | | ||| || | ||| Sbjct 1680 CAAGACCCTGATAAGTTTGCTAACCCTGTCAAAGACATTTTCACTGAAATGGCTGCGCCA 1621 Query 1020 CTGAAAAGTCCATCTGCCGAAGCTTGTGGCTATAGCGATAGAGTCGCCCAATTGACGCTC 1079 ||||| |||||| || ||||||||||| || || ||| | || || ||| | || | Sbjct 1620 CTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACCATT 1561 Query 1080 GGCAACTCGACCATTACCACACAAGAAGCTGCAAATATCGTTGTGGCATATGGAAGGTGG 1139 || ||||| |||||||| ||||| || || ||||| ||| | || | || || |||| Sbjct 1560 GGGAACTCCACCATTACTACACAGGAGGCGGCAAACATCATAGTCGGTTACGGTGAGTGG 1501 Query 1140 CCGTC 1144 || || Sbjct 1500 CCCTC 1496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23531412211952