Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_009996.1 Length=7099 Score E Sequences producing significant alignments: (Bits) Value seq643 152 2e-33 seq906 131 8e-27 >seq643 Length=7254 Score = 152 bits (168), Expect = 2e-33 Identities = 229/316 (72%), Gaps = 16/316 (5%) Strand=Plus/Minus Query 288 CGCTCAGCCACTAACCCGTGGTAGGCCTGGCAGATGAGGCTGGGCGCACCCCACTGGCGA 347 |||||||| || | ||| |||| | ||| |||||| | || ||||| ||||| Sbjct 7086 CGCTCAGC-ACAACCCCAGTGTAGATCAGGCTGATGAGTCACTGCAACCCCCATGGGCGA 7028 Query 348 CAGTGGCCCAGCCTGCGT-GGCTGCCTGCCCCTCT-----TTGAGGGGAAGCCATTTAAG 401 | |||| | |||||| ||| |||||||| | | | |||| || | ||| Sbjct 7027 CCATGGCAGTGGCTGCGTTGGCGGCCTGCCCATGGAGAAATCCATGGGACGC--TCTAAT 6970 Query 402 T--GACAAGGTGTGAAGAGTCTCGTGTGCTC-CACGTAGAATCCTTCCGGCCCCTGAATG 458 | |||| ||||||||||| || || ||| | |||| |||| |||||||||||||| Sbjct 6969 TCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAG--TCCT-CCGGCCCCTGAATG 6913 Query 459 TGGCTAATCCTAACCCCGCAGCTATTGCACACAATCCAGTGTGTTGATAGTCGTAATGGG 518 ||||||||||||| || ||| ||| ||| | |||||| || | ||||||| ||| Sbjct 6912 CGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGG 6853 Query 519 CAACTGTGGGATGGAACCAACTACTTTGGGTGTCCGTGTTTCCTGTT-TTCTTTAAATAC 577 ||||| || |||||| ||||||||||||||||||||||||| || ||||| | | Sbjct 6852 CAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGG 6793 Query 578 TTGCTTATGGTGACAA 593 ||||||||||||||| Sbjct 6792 CTGCTTATGGTGACAA 6777 Score = 91.5 bits (100), Expect = 7e-15 Identities = 189/276 (68%), Gaps = 18/276 (7%) Strand=Plus/Minus Query 4203 TGAACCAGTATGCATACTGATCAGAGGAGCTCCTGGGTGTGGGAAATCTTTGGTTACTTC 4262 |||||| |||||| || | |||||||| | ||||| |||||| || |||| || Sbjct 2905 TGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGG 2846 Query 4263 AATAATAGCCAGAGGTTTAAC---CAA--ACCAG----GTGACATTTACTCCCTTCCTCC 4313 || || || |||| || | ||| |||| ||| | || ||| | ||||| Sbjct 2845 GATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTG---TGTATTCCTTACCTCC 2789 Query 4314 AGACCCTAAACATTTTGATGGGTATGATCAACAAGAAGTGGTAA---TTATGGATGATCT 4370 |||||| | || ||||| || || | ||||| || | || | ||||||| || || Sbjct 2788 AGACCCAGACCACTTTGACGGATACAAACAACA-GA--TCGTCACTGTTATGGACGACCT 2732 Query 4371 GGGCCAAAACCCTGATGGTAAGGACCTTTCTATGTTCTGTCAGATGGTGTCAACCACTAA 4430 |||||||||| || || || ||| | || | || ||||||||||| || || | Sbjct 2731 ATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGA 2672 Query 4431 TTTCATTCCCCCAATGGCAGCTCTGGAAGATAAGGG 4466 ||| || || || |||||| ||||||| || ||||| Sbjct 2671 TTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGG 2636 >seq906 Length=2416 Score = 131 bits (144), Expect = 8e-27 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 4300 TACTCCCTTCCTCCAGACCCTAAACATTTTGATGGGTATGATCAACAAGAAGTGGTAATT 4359 ||||| ||||| ||||||||| | |||||||| |||||| | || |||| || | || Sbjct 1266 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTT 1325 Query 4360 ATGGATGATCTGGGCCAAAACCCTGATGGTAAGGACCTTTCTATGTTCTGTCAGATGGTG 4419 |||||||||||| | ||||||||||| || || ||| | || | || || ||||||||| Sbjct 1326 ATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTG 1385 Query 4420 TCAACCACTAATTTCATTCCCCCAATGGCAGCTCTGGAAGATAAGGG 4466 || ||| |||| || || |||||||| |||| ||||| ||||| Sbjct 1386 TCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGG 1432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22600267127144