Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_013695.1 Length=7379 Score E Sequences producing significant alignments: (Bits) Value seq643 437 4e-119 seq906 289 1e-74 seq945 212 3e-51 seq1144 201 5e-48 seq4341 122 4e-24 >seq643 Length=7254 Score = 437 bits (484), Expect = 4e-119 Identities = 814/1169 (70%), Gaps = 46/1169 (4%) Strand=Plus/Minus Query 161 TGAACAAGTACTTCTGTTACCCCGGAAGGGTCTATCGGTAAGCTGTACCCACGGCTGAAG 220 ||| |||| ||||||||| ||||||| | |||| || |||| | | ||||||||| Sbjct 7215 TGATCAAGCACTTCTGTTTCCCCGGACTGAG-TATCAATAGGCTGCTCGCGCGGCTGAAG 7157 Query 221 AATGAC-CTACCGTTAACCGGCTACCTACTTCGAGAAGCCTAGTAATGCCGTTGAAGTTT 279 | | | ||||| ||| | | |||||||||||||| ||||| || | | | Sbjct 7156 GAGAAAACGTTCGTTACCCGACCAACTACTTCGAGAAGCTTAGTACCACCATGAACGAGG 7097 Query 280 TATTGACGTTACGCTCAGCACACTACCCCGTGTGTAGTTTTGGCTGATGAGTCACGGCAC 339 | | ||| ||||||||||| ||||| |||||| | |||||||||||||| ||| Sbjct 7096 CAGGGT-GTTTCGCTCAGCACA--ACCCCA-GTGTAGATCAGGCTGATGAGTCACTGCAA 7041 Query 340 TCCCCACGGGCGACCGTGGCCGTGGCTGCGTTGGCGGCCAACCAAGGAGTGCAAGCTCCT 399 ||||| |||||||| |||| |||||||||||||||||| || | | | | || | | | Sbjct 7040 CCCCCATGGGCGACCATGGCAGTGGCTGCGTTGGCGGCCTGCCCATG-GAGAAATC-CAT 6983 Query 400 TGGACGTCATATTACAGACATGGTGTGAAGAGCCTATTGAGCTAGGTGGTAGTCCTCCGG 459 ||||| || | | ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 6982 GGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGG 6923 Query 460 CCCCTGAATGCGGCTAATCCTAACTCCGGAGCATATCGGTGCGAACCAGCACTTGGTGTG 519 ||||||||||||||||||||||||| ||||||| || |||||||| ||||||| Sbjct 6922 CCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTG 6863 Query 520 TTGTAATACGTAAGTCTGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTA 579 | |||| | || |||| ||||||||||||||||||||||||||||||||||| || | Sbjct 6862 TCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATT 6803 Query 580 ACTTTTAT-GGCTGCTTATGGTGACAATTTAACA-TTGTTACCATATAGCTGTTGGGTTG 637 ||| ||| ||||||||||||||||||| || | |||||||||||||||| |||| ||| Sbjct 6802 -CTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTG 6744 Query 638 GCCATCCGGATTTTG-----------TTATAAAACCATTTCCTCGTGCCTTG-ACCTTTA 685 ||||||||| | || || | | | |||| | || ||| ||| ||| Sbjct 6743 GCCATCCGG--TGTGCAACAGGGCAATTGTTTACCTATTTATTGGT--TTTGTACCATTA 6688 Query 686 ACAC----ATTTGTGAACTTCTTTAAATCCCTTTTATTAGTCCTTAAATAC---TAAGAA 738 ||| | ||||| | | |||| | |||| | || | || || || | Sbjct 6687 TCACTGAAGTCTGTGATCACTCTCAAATTCATTTT----GACCCTCAACACAATCAAACA 6632 Query 739 TGGGTGCACAAGTATCCACACAAAAATCCGGATCTCATG-AAACTGGCACTTATGCCACA 797 |||| |||| || ||||||||| ||||| || || | ||||| ||| | || || Sbjct 6631 TGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCA-GCTACC 6573 Query 798 GGTGGATCAACAATTAATTACACAAATATAAACTATTACAAAGATAGTTATGCAGCTAGT 857 | || || || || || || || | || || || || |||||| ||||| || | Sbjct 6572 GAGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACA 6513 Query 858 GCCTCACGGCAAGATTTTTCA-CAAGATCCCTCAAAATTCACAAAGCCCGTAGTAGATGC 916 || || ||| || | || || || || || |||| || || ||| Sbjct 6512 GCAGGTAAGC-AGAGCCTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACAT 6454 Query 917 TCTCACCGAAGCTGCTGTTCCTTTGAAATCACCATCAGCAGAAGCTTGCGGTTATAGTGA 976 |||| ||| || | || || ||||| ||||| || || || || ||||| ||||| Sbjct 6453 CTTCACTGAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGA 6394 Query 977 CCGCGTGTTACAATTGACACTAGGCAATTCTACTATTACCACACAGGAAGCTGCTAACAT 1036 || ||| |||||| || | ||||||||||| || || || || ||||| || ||||| Sbjct 6393 TCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACAT 6334 Query 1037 TGTGGTGGGTTATGGTAAATGGCCAGAACATCTGAAGCCAAT-TGATGCTAACTCAATAG 1095 | || || |||||| | ||||| | ||| | | |||||| | || | | Sbjct 6333 CATAGTTGGCTATGGTGAGTGGCC-TTCCTACTGTTCGGACTCTGATGCCACTGCAGTGG 6275 Query 1096 ATGCCCCAACAAAACCAGATGTAGCTGTGAACAGGTTTTACACTCTGAAAGCCAAAAAGT 1155 | ||||| |||||||| | ||||| ||||||||||| || | | ||| || Sbjct 6274 ACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGT 6215 Query 1156 GGGAAAAGGCTTCCAAAGGTTGGATGTGGAAGTTGCCCGATTGTTTGAATGATACCGGAA 1215 |||| ||| | ||||| || ||| ||||| || || ||| || | ||| ||||| Sbjct 6214 GGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGG 6155 Query 1216 TATTTGGCCAAAATTGCTGGTATCATTTCTTATA-CAGAGGTGGTTGGGCTATACATGTG 1274 | ||||| |||||| || || | | | || | | |||| || || || ||| Sbjct 6154 TCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTG 6096 Query 1275 CAGTGCAATGCTAGCAAGTTTCACCAGGG 1303 |||||||||||||| ||||| ||||| || Sbjct 6095 CAGTGCAATGCTAGTAAGTTCCACCAAGG 6067 Score = 363 bits (402), Expect = 7e-97 Identities = 1107/1676 (66%), Gaps = 80/1676 (5%) Strand=Plus/Minus Query 5535 GGGGTAAATCTAGAGTTGACACTGATCAAACTCAGGAGA--AATGAGAAGTTTAGAGACA 5592 ||||| || ||||| | |||||| | ||| | || | || || || |||||||||| Sbjct 1755 GGGGTTAACTTAGAGCTCACACTGGT--AACGCTTGATACTAACGAAAAATTTAGAGACA 1698 Query 5593 TCAGAGGGTTCATCCCATCAG-----AGGCGGGGGAGATCAATGAAGCTGTTTTGGCTAT 5647 ||| | | ||||| ||| | || | | || ||| || ||| | ||| Sbjct 1697 TCACAAGATTCATACCAGAAACAATTAGTCCTGCTAG-----TGATGCCACTTTAGTTAT 1643 Query 5648 CAATACT-AGCAAGTTCCCAAACATGTTCATCCCAGTTGGAAAAGTACACGAATATGGGT 5706 |||||| | || | |||| ||||| | ||||||||| | || | | ||||||| Sbjct 1642 AAATACTGAACATATGCCCAGT-ATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGT 1584 Query 5707 TTCTCAATTTGAGTGGCACTCCCACCCACAGGATGTTAATGTACAACTTCCCAACCAAAT 5766 || | || | ||||| | ||||| ||||||| | |||||||| |||||||| ||| Sbjct 1583 TTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAG 1524 Query 5767 CAGGACAATGCGGAGGCATACTCATGGCTACAGGTAAGGTGTTAGGAATCCATGTTGGTG 5826 ||||||| || || || | | | || ||||| ||| | || ||||| |||||| Sbjct 1523 CAGGACAGTGTGGTGGTGTTGTGACTGCCGTGGGTAAAGTGATTGGGATCCACATTGGTG 1464 Query 5827 GCAATGGGCACCAGGGCTT-TGCTGCAACTCTTTTGAGATCATATTT---CAGTGAAGAG 5882 |||| || || || || ||| || | || ||| ||| || ||||||| Sbjct 1463 GCAACGGTAGGCAAGGTTTCTGC-GCTGCCCTGAAGAGGGGATACTTTTGCAGTGAA--- 1408 Query 5883 CAAGGTGAGATTGAATGGATGGAGACCAACAAGGA----GTCAGGTTATCCCATAATCAA 5938 ||||||||||| |||||||| || ||||||| || | |||||| | ||||| Sbjct 1407 CAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAAC----ATCAA 1352 Query 5939 TGCACCAACCAAGACAAAACTAGAACCCAGCGTCTTTCATGATGTTTTTGAGGGAAAGAA 5998 | ||| || ||||| || ||||| || |||||||| ||||| || || || | || Sbjct 1351 CGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAA 1292 Query 5999 GGAGCCTGCTGTGTTGAACCCCCGT---GATCCCAGGTTGAGAGTTGATTTTGAAGAAGC 6055 ||||| || ||| ||| | || || || ||| || |||||| |||||| | || Sbjct 1291 AGAGCCAGCAGTGCTGA---CTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGC 1235 Query 6056 TATCTTCTCCAAATATGTGGGTAATGTTAACACA-CATGTG---GATGAATACATGCATG 6111 | | || || ||||| ||||| || || | |||| || || | | | | Sbjct 1234 TCTTTTTTCAAAATACGTGGGGAAC----ACGCTTCATGAACCCGACGAGTTTGTCAAGG 1179 Query 6112 AAGCAATTGATCACTATGCAGGTCAACTCATGACATTGGATATTAGCACTGAACCTCTTT 6171 | || || ||||| ||||||| | || ||||| | || ||| | Sbjct 1178 AGGCGGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACC--ACCAAGAT 1121 Query 6172 GTC--TGGAAGATGC-TGTGTATGGAACTGAAGGATTGGAAGCACTAGATCTAACAACTA 6228 | |||| ||||| ||| || || || || ||||||| ||||||| || | Sbjct 1120 GAGCATGGAGGATGCATGT-TACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAA 1062 Query 6229 GTGCAGGTTATCCTTAT-GTGACACTGGGTATAAAGAAGAGGGACATTCTT--TCCAAAA 6285 ||||||| ||||| || ||| |||| || || ||||| | ||||||| | ||||| | Sbjct 1061 GTGCAGGATATCCATACAGTG-CACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACA 1003 Query 6286 AGACCAGAGACCTTACCAAATTAAGGGAATGCATGGATAAGTATGGACTCAACTTACCAA 6345 | | | || | | ||| | | | |||||| |||||||| | | |||| Sbjct 1002 ACTC--GCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCG- 946 Query 6346 TGGTC-ACCCATGTCAAAGATGAGCTGAGAAGTGTGGAGAAAGTGCAAGCT-GGTAAATC 6403 | || || |||| |||||||| || || | || || | |||| || || || Sbjct 945 TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGAT-CAAGAAAGGGAAGTC 887 Query 6404 CCGCTTGATTGAAGCTTCCAGTTTGAATGATTCAGTAGCCATGAGACAGACATTTGGAAA 6463 || | || ||||| ||| | ||||| ||||| | ||||| ||||||||| | Sbjct 886 TCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCA 827 Query 6464 CCTGTACAGAACCTTCCACCAAAATCCAGGCGTCATGACAGGTAGTGCAGTGGGATGCAA 6523 ||| || | | |||||| |||||||| || || ||| || || || ||||| Sbjct 826 CCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAA 767 Query 6524 CCCTGATACCTTCTGGAGCAAGATACCAGTGATGTTAGATGGTGAACTTTTCGCCTTTGA 6583 ||| ||| |||||||||||| ||||| | | | || |||||||| ||||| Sbjct 766 CCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGA 707 Query 6584 CTACACAGGGTATGACGCTTCCCTCAGCCCGGTCTGGTTCGCAGCTCTAAAAATATTGCT 6643 |||| | |||||||||||| |||||||| || |||||| || || | ||| | || Sbjct 706 CTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCT 647 Query 6644 GGAGAAAATTGGATACACCAACAATGAGACCAAGTA-----CATTGATTATTTGTGTAAC 6698 | | ||||||||||| || | |||| ||| ||| || | | || Sbjct 646 GCGGGAAATTGGATACTCCGA-----AGACGCAGTGTCTCTCATAGAAGGGATCAATCAC 592 Query 6699 TCCTATCACCTTTACAAAAATAAACATTATTTTGTTAGAGGGGGCATGCCATCTGGTTGC 6758 || |||| | ||| |||||| ||||| |||| ||||| ||||| || |||||| Sbjct 591 ACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGC 532 Query 6759 TCAGGGACTTCCATCTTCAACAGTATGATCAACAACATTATAATAAGGACTTTACTCTTG 6818 ||||| || ||||| |||||| ||||||||||| || || || || || | || | Sbjct 531 TCAGGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATT 472 Query 6819 AAGACATACAAGAACATTGACTTGGATAAATTCAGGATGATAGCATACGGTGATGATGTC 6878 || |||| ||| || || | ||| || | | ||| | || ||||| |||||||| Sbjct 471 AAAACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTG 412 Query 6879 ATTGCAAGTTACCCGTATGCTATTGA-TG-CAGGCCTACTTGCTAAGG-CGGGAAAGGAG 6935 | || |||||||| | | ||||| || | || | ||| ||| | || |||||| Sbjct 411 TTGGCTAGTTACCCCTTCCCAATTGACTGTCTGG---AGTTGGCAAGAACAGGCAAGGAG 355 Query 6936 TATGGCCTGACGATGACACCAGCAGATAAGTCTGCCACCTTCAACAATGTGACGTGGGAA 6995 ||||| || || ||||| || || || ||||| || ||| || | || || ||||| Sbjct 354 TATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAG 295 Query 6996 AACGTCACCTTCTTGAAGAGATTCTTCAGGGCTGACGAACAATTCAATTTTTTGGTTCAT 7055 || | ||| |||||||||||| ||| | |||| | |||||| ||| | | || Sbjct 294 AATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCAC 235 Query 7056 CCTGTCATGCCTATGAAGGAAATTCATGAGTCAATCAGATGGACTAAAGATGCTAAGAA- 7114 ||| ||||| |||| ||| ||||| || || || | ||||| |||||||| | ||| Sbjct 234 CCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGC-ACGAAG 176 Query 7115 CACTCAAGAACATGTGAGATCGTTATGCGAATTGGCATGGCATAACGGTGAAGAGG 7170 |||||||| || ||| | || | ||| ||| |||||||| ||||| |||||| Sbjct 175 TACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGG 120 Score = 242 bits (268), Expect = 2e-60 Identities = 469/690 (68%), Gaps = 4/690 (1%) Strand=Plus/Minus Query 4003 TACCTATGGCGCAAAAGCAAGCTGATGGATGGTTGAAGAAGTTCACAGAGGCAACTAATG 4062 |||| ||||| || ||||| || ||||| |||||||||| || || | | || Sbjct 3284 TACCGATGGCTCAGAAGCAGAGTGCCTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTG 3225 Query 4063 CTGCCAAAGGGCTTGAGTGGTTGGCAAATAAAATTAGCAAATTCATCGATTGGGTGAAGT 4122 | || || |||||||||||| | | || ||||| || ||||| ||||||||| | ||| Sbjct 3224 CCGCGAAGGGGCTTGAGTGGATCTCCAACAAAATCAGTAAATTTATCGATTGGCTCAAGG 3165 Query 4123 CAAAAATTGTCCCGCAAGTCAAGGAAAAATTAGATTTTCTCTCCAAACTGAAACAGTTGC 4182 ||||| | ||| | || || ||| | || ||||| ||| || || || | | Sbjct 3164 AGAAAATCATACCGGCTGCTAAAGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCC 3105 Query 4183 CTCTCTTGGAGAGCCAGATTGCAACCATTGAACATAGTGCTCCTAGTCAAGAGGCTCAAG 4242 | | ||||||| ||| ||| | | | ||||| || || || |||| | | Sbjct 3104 CCTTATTGGAGAACCAAATTTCTAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTG 3045 Query 4243 AAACATTATACGGAAATGTGCAGTACTTAGCTCATTATTGTAGGAAGTTTGCACCTTTGT 4302 | | | | || || ||| ||| | || || | || | || || ||| | | Sbjct 3044 AGGCGATGTTTGGCAACGTGTCTTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTCT 2985 Query 4303 ATGCCGCTGAAGCCAAGAGAGTATACCACTTAGAAAAGAGAATGAACAATTACATGCAGT 4362 ||||| | ||||| ||||| || ||| | |||||||||||||||| ||||||||||||| Sbjct 2984 ATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGT 2925 Query 4363 TCAAGACCAAATCCCGCATTGAACCTGTATGTTTATTGATTCACGGGAGTCCTGGTGCAG 4422 |||||| |||| ||| |||||||||||||| || | || || |||||| | | Sbjct 2924 TCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTG 2865 Query 4423 GGAAATCAGTTGTTTCTAGTTTAGTTGGGCGTGCAATTGCAGAGAAAATGAACAGTTCA- 4481 |||| ||| | | | | | ||| | || || || ||| || | || | || Sbjct 2864 GGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGC--AGACAAGTACCACTCCAG 2807 Query 4482 -GTGTACTCACTCCCACCAGACCCAGACCATTTTGATGGGTATAAACAACAAGCTGTAGT 4540 ||||| || | || |||||||||||||| ||||| || || |||||||| || Sbjct 2806 TGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCAC 2747 Query 4541 TATCATGGATGATTTATGTCAAAACCCAGATGGTAAAGATGTTTCACTACTCTGCCAAAT 4600 | | ||||| || |||| ||||||||||| || ||||| | |||||| | || || || Sbjct 2746 TGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGAT 2687 Query 4601 GGTGTCAACAGTTGATTTCATACCTCCAATGGCATCTTTGGAAGAAAAAGGCATACTATA 4660 ||| || ||||| ||||| ||||| || ||||||||| |||| || || || | || Sbjct 2686 GGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATT 2627 Query 4661 TACTTCACCATTTATGATTGCCTCAACAAA 4690 || || ||| |||||||||| || || Sbjct 2626 CACCTCCAAGTTTGTGATTGCCTCCACTAA 2597 Score = 125 bits (138), Expect = 3e-25 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 2002 TTGGGCAAATT-TGCAGATACTTCAACAACTGGTCAGGGAGCATTGAAA-TCACTTTCAT 2059 |||||| | || ||| | |||| || | | |||||||| | || || || |||| ||||| Sbjct 5363 TTGGGCCAGTTGTGCGGGTACTACACCCAATGGTCAGG-ATCACTGGAAGTCACCTTCAT 5305 Query 2060 GTTCTGTGGATCCTTCATGGCAACAGGCAAGATCTTAATTGCTTACACACCACCAGGAGG 2119 |||| || ||||| ||||| || |||||||| | || || ||||||||||||||||| Sbjct 5304 GTTCACCGGGTCCTTTATGGCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGG 5245 Query 2120 TAGTGCCCCGACTGATCGCAAAAGTGCAATGTTAGGTACACATGTCATTTGGGATTTTGG 2179 || | || || | || ||||| || || || ||||| ||||| ||||| Sbjct 5244 CCCCTTACCCAAGGACCGGGCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGG 5185 Query 2180 TCTTCAATCCTCAGCCACCCTTCTAATCCCATGGATAAGCAATAC 2224 || ||||| || | ||||||| |||| |||||||| ||||| || Sbjct 5184 GCTGCAATCGTCTGTCACCCTTGTAATACCATGGATCAGCAACAC 5140 >seq906 Length=2416 Score = 289 bits (320), Expect = 1e-74 Identities = 758/1148 (66%), Gaps = 24/1148 (2%) Strand=Plus/Plus Query 3516 CTCACATTTATTGAGGCCAATGAGTACTACCCAGCGCGATATCAGTCCCACGTGCTTCTA 3575 |||| || | | || || | ||||| ||||| || |||| || || ||| || | || Sbjct 297 CTCATATATGTGGAAGCTAGCGAGTATTACCCTGCTAGATACCAATCGCACCTGATGCTT 356 Query 3576 GCCGTTGGCCATGCGCAACCAGGCGATTGTGGTGGCATTTTACGATGTGAACATGGAGTG 3635 || | ||||| | | || ||||| || || ||||| ||| | ||| ||||||| || Sbjct 357 GCAGCGGGCCACTCTGAGCCCGGCGACTGCGGAGGCATCTTAAGGTGTCAACATGGTGTA 416 Query 3636 GTGGGAATCCTAACAGCAGGTGGGAACGGGTTAGTAGCATTTGCTGATTTGAGAGACTTG 3695 || || || | | | ||||| |||||| | || | |||||||||| |||| || | Sbjct 417 GTTGGTATAGTGTCCACGGGTGGCAACGGGCTCGTTGGATTTGCTGATGTGAGGGATCTC 476 Query 3696 TTGTGGATTGAGGATGATGCCATGGAGCAGGGCGTCTCTGACTACGTCCAAAGACTGGGC 3755 |||||| | || || || || |||||||| || || || |||||| | | | || || Sbjct 477 TTGTGGTTAGATGAAGAGGCTATGGAGCAAGGTGTGTCCGACTACATTAAGGGGCTCGGT 536 Query 3756 TCTGCATTTGGTGCCGGGTTCACCAATGAAATTG----CAGAAAAAACCCAGCAAATCAA 3811 || ||||| | || ||||| |||| || ||| || ||| | | Sbjct 537 GACGCGTTTGGAACAGGCTTCAC---TGAAGCTGTATCCAGGGAAGTTGAAGCCCTT-AG 592 Query 3812 GGAGATGCTTATTGGACAAGACTCAGTGTTAGA-AAAATGTTTAAAAGCATTAATCAAAA 3870 | | || || ||| || || | | || ||||| | || | | ||| | || Sbjct 593 GAACCACCTCATAGGATCTGATGGAGCGGTTGAGAAAATCCTAAAGAACCTTATT-AAGC 651 Query 3871 TTGTTTCTGCTATGGTTATACTCATCAGAAATCATGAAGATTTGATAACTGTCACTGCCA 3930 | |||| || | || || | ||||| | || | ||| || | || |||| || | Sbjct 652 TGATTTCAGCGTTAGTAATTGTGATCAGGAGCGATTATGATATGGTCACCCTCACAGCAA 711 Query 3931 CCCTTGCATTGATTGGATGTAGTGCTAGTCCATGGCAATGGTTGAAATCAAAG---GTTT 3987 | | || ||||||| ||| | ||||| ||| ||| | ||| | ||| | | Sbjct 712 CTTTAGCCCTGATTGGTTGTCACGGAAGTCCTTGGGCTTGGATTAAAGCCAAGACAGCAT 771 Query 3988 GC-TCTTATTTCCAAGTACCTATGGCGCAAAAGCAAGCTGATGGATGGTTGAAGAAGTTC 4046 | ||||| | | || || || || ||||| || | ||| | ||||| || Sbjct 772 CCATCTTAGGTA----TCCCCATCGCCCAGAAGCAGAGTGCTTCTTGGCTAAAGAAATTT 827 Query 4047 ACAGAGGCAACTAATGCTGCCAAAGGGCTTGAGTGGTTGGCAAATAAAATTAGCAAATTC 4106 | || | | ||| ||||| || | || ||| | | || |||||||| || ||| Sbjct 828 AATGATATGGCGAGTGCCGCCAAGGGTTTAGAATGGATATCCAACAAAATTAGTAAGTTC 887 Query 4107 ATCGATTGGGTGAAGTCAAAAATTGTCCCGCAAGTCAAGGAAAAATTAGATTTTCTCTCC 4166 || || ||| | | | || ||||| || || |||||| ||| ||| ||| | || Sbjct 888 ATTGACTGGCTCAGGGAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTTTTAACC 947 Query 4167 AAACTGAAACAGTTGCCTCTCTTGGAGAGCCAGATTGCAACCATTGAACATAGTGCTCCT 4226 || |||| || ||||| || || |||| |||||| | | | | || || ||| | Sbjct 948 AATTTGAAGCAATTGCCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCCGCTGCC 1007 Query 4227 AGTCAAGAGGCTCAAGAAACATTATACGGAAATGTGCAGTACTTAGCTCATTATTGTAGG 4286 ||||||| | ||| | | | || |||||| ||| | || |||| ||| | Sbjct 1008 TCACAAGAGGACCTTGAAGCTATGTTTGGGAATGTGTCATACCTCGCCCATTTCTGTCGC 1067 Query 4287 AAGTTTGCACCTTTGTATGCCGCTGAAGCCAAGAGAGTATACCACTTAGAAAAGAGAATG 4346 ||||| ||| || || ||| | ||||| ||| |||| || |||| ||||||||| Sbjct 1068 AAGTTCCAACCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATG 1127 Query 4347 AACAATTACATGCAGTTCAAGACCAAATCCCGCATTGAACCTGTATGTTTATTGATTCAC 4406 ||||| |||||||||||||||| |||| ||| ||||||||||||||| | | ||| Sbjct 1128 AACAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGA 1187 Query 4407 GGGAGTCCTGGTGCAGGGAAATCAGTTGTTTCTAGTTTAGTTGGGCGTGCAATTGCAGAG 4466 || || || | || || || ||| | || | ||| || | || ||||| Sbjct 1188 GGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGAC 1247 Query 4467 AAAATGAACAGTTCAGTGTACTCACTCCCACCAGACCCAGACCATTTTGATGGGTATAAA 4526 || || | ||||||||||| ||||||||||| ||||||||||| ||||||||| Sbjct 1248 AAGTATCACTCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAA 1307 Query 4527 CAACAAGCTGT---AGTTATCATGGATGATTTATGTCAAAACCCAGATGGTAAAGATGTT 4583 || |||| || |||| ||||||||| | ||||||||||| || || ||||| | Sbjct 1308 CAGCAAGTGGTCACAGTT---ATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATG 1364 Query 4584 TCACTACTCTGCCAAATGGTGTCAACAGTTGATTTCATACCTCCAATGGCATCTTTGGAA 4643 ||| || | ||||| |||||||| || || ||||| || || |||||||| ||| | ||| Sbjct 1365 TCATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAA 1424 Query 4644 GAAAAAGG 4651 ||||| || Sbjct 1425 GAAAAGGG 1432 >seq945 Length=2018 Score = 212 bits (234), Expect = 3e-51 Identities = 535/793 (67%), Gaps = 48/793 (6%) Strand=Plus/Minus Query 553 CTTTGGGTGTCCGTGTTTCCTGTTTTAACTTTTAT-GGCTGCTTATGGTGACAATT-TAA 610 || |||||||||||||||||| || | ||| ||| |||||||||||||||||||| | Sbjct 2018 CTCTGGGTGTCCGTGTTTCCTTTTATT-CTTATATTGGCTGCTTATGGTGACAATTACAG 1960 Query 611 CATTGTTACCATATAGCTGTTGGGTTGGCCATCCGG------AT---TTTGTTATAAAAC 661 ||||||||||||||||| |||| |||||||||||| || | ||||| | | Sbjct 1959 AATTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGCAATAGAGCTATTATATACC 1900 Query 662 CATTT-----CCTCGTGCC-TTGACCTTTAACACATTTGTGAACTTCTTTAAATCCCTTT 715 |||| | | ||||| | ||||| || || | | | | | | | | || Sbjct 1899 TATTTGTTGGCTTTGTGCCACTAACCTTAAA---ATCTATAACCACCCTCGA---CTTTA 1846 Query 716 TATTAGTCCTTAA-ATACT-AAGAATGGGTGCACAAGTATCCACACAAAAATCCGGATCT 773 || || ||| || | | | || ||||| |||| || ||||| || |||||| || Sbjct 1845 TACTAACCCTCAATACAGTCAAACATGGGCTCACAGGTGTCCACTCAGCGATCCGGCTCC 1786 Query 774 CATGA-AACTGGCACTTATGCCACAGGTGGATCAACAATTAATTACACAAATATAAACTA 832 || || |||| || || || |||| || || || ||||||||||| | || ||||| Sbjct 1785 CACGAGAACT-CCAATTCAGCTACAGAAGGCTCCACCATTAATTACACTACCATCAACTA 1727 Query 833 TTACAAAGATAGTTATGCAGCTAGTGCCTCACGGCA---AGA-TTTTTCACAAGATCCCT 888 ||||||||| ||||| || | || || | ||| | |||||| |||| Sbjct 1726 TTACAAAGACTCCTATGCTGCGACAGC----GGGTAAACAGAGCCTCAAACAAGA-CCCT 1672 Query 889 CA-AAATTCACAAAGCCCGTAGTAGATGCTCTCACCGAAGCTGCTGTTCCTTTGAAATCA 947 | || || | || || || ||| | |||| ||| |||| || |||| || Sbjct 1671 GATAAGTTTGCTAACCCTGTCAAAGACATTTTCACTGAAATGGCTGCGCCACTGAAGTCT 1612 Query 948 CCATCAGCAGAAGCTTGCGGTTATAGTGACCGCGTGTTACAATTGACACTAGGCAATTCT 1007 ||||| || |||||||| ||||| ||||| |||||| |||| | || | || || || Sbjct 1611 CCATCCGCTGAAGCTTGTGGTTACAGTGATCGCGTGGCACAACTCACCATTGGGAACTCC 1552 Query 1008 ACTATTACCACACAGGAAGCTGCTAACATTGTGGTGGGTTATGGTAAATGGCCAGAACA- 1066 || ||||| |||||||| || || ||||| | || ||||| ||| | ||||| | | Sbjct 1551 ACCATTACTACACAGGAGGCGGCAAACATCATAGTCGGTTACGGTGAGTGGCCCTCATAC 1492 Query 1067 ---TCTGAAGCCAATTGATGCTAACTCAATAGATGCCCCAACAAAACCAGATGTAGCTGT 1123 ||||| | | || || | | | || ||||| |||||||| | || Sbjct 1491 TGCTCTGATGAC----GACGCCACAGCGGTGGACAAACCAACGCGCCCAGATGTTTCGGT 1436 Query 1124 GAACAGGTTTTACACTCTGAAAGCCAAAAAGTGGGAAAAGGCTTCCAAAGGTTGGATGTG 1183 ||| |||||||| || ||| | | ||| |||||||||| | || || |||||| || Sbjct 1435 GAATAGGTTTTATACACTGGACACTAAACTGTGGGAAAAGTCATCTAAGGGTTGGTATTG 1376 Query 1184 GAAGTTGCCCGATTGTTTGAATGATACCGGAATATTTGGCCAAAATTGCTGGTATCATTT 1243 |||||| || ||| |||| ||| |||||| | |||||||| || || ||| | Sbjct 1375 GAAGTTTCCTGATGTGTTGACTGAGACCGGAGTCTTTGGCCAGAACGCACAGTTTCACTA 1316 Query 1244 CTTATACAGA-GGTGGTTGGGCTATACATGTGCAGTGCAATGCTAGCAAGTTTCACCAGG 1302 || || ||| |||| || || |||||||| || || ||||||||||| || || | Sbjct 1315 TTTGTATAGATCAGGGTTTTGC-ATTCATGTGCAATGTAACGCTAGCAAGTTCCATCAAG 1257 Query 1303 GTACTCTATTAGT 1315 | | || ||||| Sbjct 1256 GAGCGCTGTTAGT 1244 Score = 102 bits (112), Expect = 4e-18 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1989 CAGTCAACATACCTTGGGCAAATTTGCAGATACTTCAACAACTGGTCAGGGAGCATTGAA 2048 || |||||| || || ||| | || |||| | || | | ||||||||| | || Sbjct 564 CAATCAACAATGCTGGGCCAACTCTGTGGATATTACACCCAGTGGTCAGGGTCACTGGAG 505 Query 2049 ATCACTTTCATGTTCTGTGGATCCTTCATGGCAACAGGCAAGATCTTAATTGCTTACACA 2108 ||||||| ||||| || || |||||||| ||||| || || | || ||||| ||| Sbjct 504 GTCACTTTTATGTTTACCGGGTCTTTCATGGCCACAGGTAAAATGCTCATAGCTTATACA 445 Query 2109 CCACCAGGAGGTAGTGCCCCGACTGATCGCAAAAGTGCAATGTTAGGTACACATGTCATT 2168 || || || || || | ||||| | |||||| | || |||||||| || Sbjct 444 CCTCCTGGCGGCCCCTTACCCAAAGATCGGGCCACAGCAATGCTGGGCACACATGTTATC 385 Query 2169 TGGGATTTTGGTCTTCAATCCTCAGCCACCCTTCTAATCCCATGGATAAGCAATAC 2224 ||||||||||| || ||||| || | |||||| |||| |||||||| || || || Sbjct 384 TGGGATTTTGGGCTGCAATCATCTGTTACCCTTGTAATACCATGGATCAGTAACAC 329 >seq1144 Length=1302 Score = 201 bits (222), Expect = 5e-48 Identities = 779/1204 (65%), Gaps = 34/1204 (3%) Strand=Plus/Plus Query 5977 ATGATGTTTTTGAGGGAAAGAAGGAGCCTGCTGTGTTGAACCCCCGT---GATCCCAGGT 6033 ||||||| ||||| || || ||||| || || || || | | || || || || | Sbjct 1 ATGATGTGTTTGAAGGTAATAAGGAACCAGCAGTTTTAA---CAAGTAAAGACCCTAGAT 57 Query 6034 TGAGAGTTGATTTTGAAGAAGCTATCTTCTCCAAATATGTGGGTAATGTTAACACACATG 6093 || || || |||||| |||| | || ||||| |||||||| |||||| |||| | Sbjct 58 TGGAGGTCGACTTTGAACAAGCCCTGTTTTCCAAGTATGTGGGCAATGTTTT-ACACGAG 116 Query 6094 TG-GATGAATACATGCATGAAGCAATTGATCACTATGCAGGTCAACTCATGACATTGGAT 6152 |||||||| || | |||| ||||| || |||||| | |||||| Sbjct 117 CCCGATGAATATGTGACTCAAGCTGCCCTCCACTACGCGAATCAACTTAAACAATTGGAC 176 Query 6153 ATTAGCACTGAACCTCTTTGTCTGGAAGATGCTGTG-TATGGAACTGAAGGATTGGAAGC 6211 || | |||| | | |||| || || ||| ||||| |||||| |||| || Sbjct 177 ATAAACACTAGCAAGATGAGCATGGAGGAAGC-GTGCTATGGCACTGAAAACCTGGAGGC 235 Query 6212 ACTAGATCTAACAACTAGTGCAGGTTATCCTTATGTGACACTGGGTATAAAGAAGAGGGA 6271 | | || || |||||||| || || || || | || || || ||||| || || Sbjct 236 AATTGACCTCTGCACTAGTGCCGGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGA 295 Query 6272 CATTCTTTCCAAAAAGACCAGAGACCTTACCAAATTAAGGGAATGC---ATGGATAAGTA 6328 ||||||| | | ||||| || | | || | | ||| | |||||||| || Sbjct 296 CATTCTTGACCCCACAACCAGGGATGTGTCTAAGATGA---AATTCTATATGGATAAATA 352 Query 6329 TGGACTCAACTTACCAATGGTC-ACCCATGTCAAAGATGAGCTGAGAAGTGTGGAGAAAG 6387 || || | | ||| | || ||| |||| || |||||||| || |||| ||| Sbjct 353 CGGGCTAGATCTGCCA-TACTCTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAA 411 Query 6388 TGCAAGCTGGTAAA-TCCCGCTTGATTGAAGCTTCCAGTTTGAATGATTCAGTAGCCATG 6446 | |||| | ||| || |||||||| || ||| || |||||||| || || | | Sbjct 412 T-CAAGAAAGGAAAGTCACGCTTGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTC 470 Query 6447 AGACAGACATTTGGAAACCTGTACAGAACCTTCCACCAAAATCCAGGCGTCATGACAGGT 6506 ||| | | ||||| |||| || | || || || || ||| |||| || Sbjct 471 AGAATGGCTTTTGGGCACCTTTATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGC 530 Query 6507 AGTGCAGTGGGATGCAACCCTGATACCTTCTGGAGCAAGATACCAGTGATGTTAGATGGT 6566 |||||||| || ||||| || || |||||||| |||| | || | ||| Sbjct 531 TCAGCAGTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGG 590 Query 6567 GAACTTTTCGCCTTTGACTACACAGGGTATGACGCTTCCCTCAGCCCGGTCTGGTTCGCA 6626 || || |||||||||||| |||| ||||| ||| ||||||||||| |||||| Sbjct 591 TCGCTCTTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGG 650 Query 6627 GCTCTAAAAATATTGCTGGAGAAAATTGGATACACCAACAATGAGACCAAGTAC---ATT 6683 ||| || || | || | | | ||||| || | | ||| || || | || Sbjct 651 GCTTTAGAAGTTGTGTTACGGGAGATTGGGTATTCAGAG---GAGGCCGTGTCCCTAATA 707 Query 6684 GATTATTTGTGTAACTCCTATCACCTTTA-CAAAAATAAACATTATTTTGTTAGAGGGGG 6742 || | || || | || | || | || |||||| | | ||| || || Sbjct 708 GAAGGGATCAACCACACCCACCATGTGTATCGGAACAAAACAT-ACTGTGTACTTGGTGG 766 Query 6743 CATGCCATCTGGTTGCTCAGGGACTTCCATCTTCAACAGTATGATCAACAACATTATAAT 6802 ||||| || || || || || ||||||||||| || |||||||||||||| || || Sbjct 767 AATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCAT 826 Query 6803 AAGGACTTTACTCTTGAAGACATACAAGAACATTGACTTGGATAAATTCAGGATGATAGC 6862 || || | | | || || | ||| || ||| ||||| | || | ||| | || Sbjct 827 CAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGC 886 Query 6863 ATACGGTGATGATGTCATTGCAAGTTACCCGTATGCTATTGATGCAGGCCT--ACTTG-C 6919 || || || ||||| | || |||||||| | | | |||||| |||| | ||| | Sbjct 887 CTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATT---GCCTTGAGTTGGC 943 Query 6920 TAAGGCGGGAAAGGAGTATGGCCTGACGATGACACCAGCAGATAAGTCTGCCACCTTCAA 6979 |||| | || || |||||||| |||| ||||| || ||||| || || || ||||| Sbjct 944 TAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAA 1003 Query 6980 CAATGTGACGTGGGAAAACGTCACCTTCTTGAAGAGATTCTTCAGGGCTGACGAACAATT 7039 | || || |||||||| | |||||| |||||||| ||| | | ||| | ||||| Sbjct 1004 TGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATT 1063 Query 7040 CAATTTTTTGGTTCATCCTGTCATGCCTATGAAGGAAATTCATGAGTCAATCAGATGGAC 7099 || || |||| ||| ||||| |||| || || ||||| || || ||||||| Sbjct 1064 TCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGAC 1123 Query 7100 TAAAGATGCTAAGAACACTCAAGAACATGTGAGATCGTTATGCGAATTGGCATGGCATAA 7159 |||||| || ||||| ||||| || ||| | || | || ||||||||||| || Sbjct 1124 TAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAA 1183 Query 7160 CGGT 7163 ||| Sbjct 1184 TGGT 1187 >seq4341 Length=257 Score = 122 bits (134), Expect = 4e-24 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 161 TGAACAAGTACTTCTGTTACCCCGGAAGGGTCTATCGGTAAGCTGTACCCACGGCTGAAG 220 ||| |||| ||||||||| ||||||| | |||| || ||| | | ||| ||||| Sbjct 209 TGATCAAGCACTTCTGTTTCCCCGGACCGAG-TATCAATAGACTGCTCACGCGGTTGAAG 151 Query 221 AATGAC-CTACCGTTAACCGGCTACCTACTTCGAGAAGCCTAGTAATGCCGTTGAAGTTT 279 | | | |||||| ||||||| |||||||||||| | |||||| || |||||| | Sbjct 150 GAGAAAGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGAAGCTG 91 Query 280 TATTGACGTTACGCTCAGCACACTACCCCGTGTGTAGTTTTGGCTGATGAGTCACGGCAC 339 | | ||| ||||| | |||| |||| |||||| | || |||||||||| ||| Sbjct 90 CAGAG-TGTTTCGCTCGG--CACTTCCCC-CGTGTAGATCAGGTCGATGAGTCACTGCAA 35 Query 340 TCCCCACGGGCGACCGTGGCCGTGGCTGCGTTGG 373 |||||||||| ||||||||| ||||||||| ||| Sbjct 34 TCCCCACGGGTGACCGTGGCAGTGGCTGCGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23496214287784