Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_015934.1 Length=7749 Score E Sequences producing significant alignments: (Bits) Value seq1144 158 6e-35 seq643 113 2e-21 seq906 91.5 7e-15 >seq1144 Length=1302 Score = 158 bits (174), Expect = 6e-35 Identities = 309/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 6977 GGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCATAAATAACCTC 7036 || || ||||| |||||||||||||| || |||||||| |||||||| || || ||| || Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821 Query 7037 ATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATCGCCTGCGCATC 7096 || || || || ||| || | || ||| ||| ||| ||| ||||| || ||| Sbjct 822 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 881 Query 7097 ATTGCGTACGGTGATGACGTGATTATATCTTACCC--TCACCAGCTGGATGCTGC--TGC 7152 | || || || || || ||| | |||||| | ||| | ||| ||| || Sbjct 882 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCA--TTGAT--TGCCTTGA 937 Query 7153 ACTCGCGGAGTGCGGCAAGGATTACAATTTGACAATGACACCTGCAGACAAGTCAGACAC 7212 | || || ||||| || || |||||| ||||| ||||||||||| ||| | Sbjct 938 GTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG 997 Query 7213 ATTCAATGAGGTAACATGGGACAACGTCACCTTTCTTAAGCGACGATTTGTTCCAGACAA 7272 |||||||| ||||||||||| || | ||||| || ||| || |||| | |||||| | Sbjct 998 TTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCA 1057 Query 7273 GCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGGACTCAATCCG 7332 || || |||||||| | ||||| | || ||| ||||||| || || || || Sbjct 1058 CCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCG 1117 Query 7333 CTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCCTCCTAGCATG 7392 ||||| ||| || |||||||| | ||||| | | |||| || | ||||| Sbjct 1118 ATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATG 1177 Query 7393 GCATAATGGCCAGGAAGTCTACGAGGATTTTGT 7425 ||| ||||| |||| | || ||| | ||||| Sbjct 1178 GCACAATGGTAAGGATGAATATGAGAAGTTTGT 1210 >seq643 Length=7254 Score = 113 bits (124), Expect = 2e-21 Identities = 145/189 (77%), Gaps = 16/189 (8%) Strand=Plus/Minus Query 251 GAAGAGTCTATTGAGCTA-CTGTTGATACCTCCGGCCCCCTGAATGCGGCTAATCTCAAC 309 |||||| ||||||||||| ||| | | ||||||||||| ||||||||||||||| ||| Sbjct 6956 GAAGAGCCTATTGAGCTAGCTGGTAGT-CCTCCGGCCCC-TGAATGCGGCTAATCCTAAC 6899 Query 310 CCCGGAGCCACTGGGTGGTGAACCAACCACTTGGTGGT----CGTAATGAGCAATTCTGG 365 |||||| || | | || ||||| | |||||| ||||| | |||| |||| Sbjct 6898 TGCGGAGC-ACATGCTC----ACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGC 6844 Query 366 GACGGAACCGACTACTTTGGGGTGTCCGTGTTT-CTTTTGTTCATAT-TAAACTGTTTTA 423 |||||||||||||||| |||||||||||||| ||||| ||| ||| | ||| ||| Sbjct 6843 AGCGGAACCGACTACTTT-GGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTG-CTTA 6786 Query 424 TGGTCACAA 432 |||| |||| Sbjct 6785 TGGTGACAA 6777 Score = 109 bits (120), Expect = 3e-20 Identities = 546/859 (64%), Gaps = 43/859 (5%) Strand=Plus/Minus Query 6563 TATGGCTACGACCTCCCGTATGTCACATACCTTAAGGATGAGCTCAGACCAATTGACAAA 6622 ||||| | || || ||||| || || |||| ||||| || || | || ||||| Sbjct 963 TATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAG 904 Query 6623 GTCAGGAAGGGGAAGACCCGCCTGATAGA---GTGCAGTTCCATGAATGACACAATCAGG 6679 ||| ||| |||||| | || || ||||| | |||| | | |||||| || | Sbjct 903 ATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAG---CCTAAATGACTCAGTGTAC 847 Query 6680 ATGAAGACCACTTTTGGTCGCTTGTTTCAGACTTTCCATGCAAATCCAGGTACCGTCACC 6739 ||| | || ||||| | | | | | | ||||||| || ||||||||||| ||||| Sbjct 846 TTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACC 787 Query 6740 GGATCAGCTGTTGGTTGCAACCCGGATCTTGACTGGAGCA-------AATTCTACGCGGA 6792 || ||||||||||| |||||||| ||| | |||||||| |||||||| | | Sbjct 786 GGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCA 727 Query 6793 GATGGGTGACAACCCACTCATAGCGTATGACTACTCAAATTTTGACGCCTCACTGGGCTC 6852 | || | || | |||| ||||||||| | |||||| || || | Sbjct 726 G------GA----TCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCC 677 Query 6853 AGTGTGGTTTGAAGCACTCAAACAGGTCCTCCGTAAATTGGGATACAACGAA-AAGCAG- 6910 ||||||||| || || | ||||| || || | |||||| |||| | |||| Sbjct 676 AGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGAAGACGCAGT 617 Query 6911 --CTCAAGTGCATTGACCACGTGAAGAACAGCACCCACC---TCTACAAGGACATCGTGT 6965 ||| ||| | | | || || |||||| | | ||| | | | Sbjct 616 GTCTC----TCATAG---AAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTT 564 Query 6966 ATGAGGTTGAGGGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCA 7025 || ||| || || ||||| ||||| || || || || ||||| ||||| || || | Sbjct 563 ATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGA 504 Query 7026 TAAATAACCTCATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATC 7085 | || || |||| ||||| ||||| || | || | | ||| || || | ||| Sbjct 503 TCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATG 444 Query 7086 GCCTGCGCATCATTGCGTACGGTGATGACGTGAT-TATATCTTACCCTCACCAGCTGGAT 7144 ||| ||| | || ||||| ||||| ||| | || | |||| ||| || | Sbjct 443 AACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACT 384 Query 7145 GCTGCTGCACTCGCGGAGTGC-GGCAAGGATTACAATTTGACAATGACACCTGCAGACAA 7203 | ||| | | | || | |||||||| || | | || ||||| ||||| ||||| Sbjct 383 G--TCTGGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAA 326 Query 7204 GTCAGACACATTCAATGAGGTAACATGGGACAACGTCACCTTTCTT-AAGCGACGATTTG 7262 |||| | || |||||||| |||||||| || | || ||||||| ||| || |||| Sbjct 325 GTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCA-CTTTCTTGAAGAGAGGATTCT 267 Query 7263 TTCCAGACAAGCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGG 7322 | || || | || ||||| || | ||||||| | |||||| ||||| | Sbjct 266 TGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACG 207 Query 7323 ACTCAATCCGCTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCC 7382 | || || || ||||| ||| ||| || || || | ||||| | | | ||| Sbjct 206 AATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCT 147 Query 7383 TCCTAGCATGGCATAATGG 7401 | |||||||||| || || Sbjct 146 TATTAGCATGGCACAACGG 128 Score = 84.2 bits (92), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 4598 CCACCTGACCCAAAACACTTTGATGGTTACGCCCAGCAACCTGTCGTCA---TCATGGAT 4654 || || |||||| | |||||||| || ||| | |||| |||||| | ||||| Sbjct 2793 CCTCCAGACCCAGACCACTTTGACGGATACA---AACAACAGATCGTCACTGTTATGGAC 2737 Query 4655 GATGTTGGTCAAAACCCTGACGGCGAGGATCTCAAACTCTTCTGCCAGATGGTCTCCTCT 4714 || | | |||||||| ||||| | || | ||| || || |||||||||||| | Sbjct 2736 GACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCAC- 2678 Query 4715 ACTGAATTTGTTGTC-CCAATGGCCGCGCTGGAAGAGAAAGGGATGTCCTTCACCTCAAA 4773 | || |||| | | || ||||| | ||||| ||||| || | || |||||||| || Sbjct 2677 AGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAA 2618 Query 4774 GTTTGTCCTAGCCTCAACTAAC 4795 |||||| | ||||| |||||| Sbjct 2617 GTTTGTGATTGCCTCCACTAAC 2596 >seq906 Length=2416 Score = 91.5 bits (100), Expect = 7e-15 Identities = 149/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 4589 TACTCTCTCCCACCTGACCCAAAACACTTTGATGGTTACGCCCAGCAACCTGTCGTCA-- 4646 ||||| || ||||| ||||| | || ||||| || || |||||| || |||| Sbjct 1266 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAA---GTGGTCACA 1322 Query 4647 -TCATGGATGATGTTGGTCAAAACCCTGACGGCGAGGATCTCAAACTCTTCTGCCAGATG 4705 | ||||||||| | ||||||||||||||||| | || | | | || ||||||||| Sbjct 1323 GTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATG 1382 Query 4706 GTCTCCTCTACTGAATTTGTTGTCCCAATGGCCGCGCTGGAAGAGAAAGGGA-TGTCCTT 4764 || ||| | || ||| | |||||||| | || ||||| ||||||| | ||||| Sbjct 1383 GTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGA-AAAGGGAGTTTCCTT 1441 Query 4765 CACCTCAAAGTTTGTCCTAGCCTCAACTAAC 4795 ||| || || ||||| | || || || ||| Sbjct 1442 CACATCTAAATTTGTTATCGCATCCACCAAC 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24680144464344