Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_015940.1 Length=7753 Score E Sequences producing significant alignments: (Bits) Value seq906 95.1 6e-16 >seq906 Length=2416 Score = 95.1 bits (104), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 4656 TATTCATTGCCACCAGACCCCAAACATTTTGATGGATATGCCCAACAGCCAGTTGTCA-- 4713 || ||| | ||||||||||| | |||||||| || ||| |||||| ||| |||| Sbjct 1266 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATA---AACAGCAAGTGGTCACA 1322 Query 4714 -TCATGGATGATTTGGGCCAGAACCCTGATGGGGAAGAT-TGCAAGTTGCTTTGCCAGAT 4771 | ||||||||| || | || |||||||| || |||| || | || |||||||||| Sbjct 1323 GTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCA-TTATTTTGCCAGAT 1381 Query 4772 GGTTTCTTCAACAGAATTTATTGTTCCCATGGCTGCTCTTGAGGAGAAGGGTCTTGCCTT 4831 ||| || | || ||||| || |||||| |||| || || ||||| || |||| Sbjct 1382 GGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTT 1441 Query 4832 TACTTCAGATTTTGTGCTTGCCTCCACCAAC 4862 || || | ||||| | || ||||||||| Sbjct 1442 CACATCTAAATTTGTTATCGCATCCACCAAC 1472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24692943709496