Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_015941.1 Length=7693 Score E Sequences producing significant alignments: (Bits) Value seq1144 96.9 2e-16 seq906 87.8 9e-14 seq643 78.8 5e-11 >seq1144 Length=1302 Score = 96.9 bits (106), Expect = 2e-16 Identities = 242/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 7002 GGTGGGATGCCATCTGGTTGCTCTGGGACATCAATTTTTAATTCCATTATAAATAATATA 7061 ||||| ||||| || || || ||||| || || || |||||||| || || || || || Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821 Query 7062 ATAATTAGGACATTAGTTTTAGATGTTTATAAGGGAATAGATTTGGATCAGTTGCGCATG 7121 || || || || | | | | || |||||||||||| ||||| ||||| |||| Sbjct 822 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 881 Query 7122 ATAGCCTATGGAGATGATGTTATTGCAACCTATCCCTTCCAACTTGATGCTGGC--GCCT 7179 | |||||||| || ||||| | || | || ||||| | ||||| || | | | Sbjct 882 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGAT--TGCCTTGAGT 939 Query 7180 TGGCTGAGGCTGGTACCACATATGGGTTGCAGATGACTCCACCTGAC-AAGGATTCTGAT 7238 ||||| || |||| | ||||| ||| |||||||| | ||| || | ||| | Sbjct 940 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG-T 998 Query 7239 TTTAATGATACAACCTGGGACAACGTGACCTTTCTTAAGAGAACCTTTGTTCCAGATTCT 7298 || ||||| ||| ||||| || | ||||| || |||||| || | ||||| Sbjct 999 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCAC 1058 Query 7299 GAGTTTCCTTTCCTTGTCCATCCCTGTTTTCCAATGAAGGAGGTTTTTGAATCCATTCGC 7358 | ||||| ||| | | || || | || |||| ||| | |||||||||||| Sbjct 1059 CAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGA 1118 Query 7359 TGG 7361 ||| Sbjct 1119 TGG 1121 >seq906 Length=2416 Score = 87.8 bits (96), Expect = 9e-14 Identities = 190/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 4629 TACTCATTGCCACCTGATCCCAAGCATTTTGATGGTTATGCCCAGCAACCTGTTGTGA-- 4686 |||||| | ||||| || || | |||||||| || ||| |||||| || || | Sbjct 1266 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAA---GTGGTCACA 1322 Query 4687 -TTATGGATGATCTGGGACAAAACCCAGATGGAGAAGA-TTGTAAGCTGCTGTGTCAAAT 4744 |||||||||||||| | |||||||| || || |||| ||| | | | || || || Sbjct 1323 GTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTCA-TTATTTTGCCAGAT 1381 Query 4745 GGTATCCTCAACAGAGTTTATAACCCCTATGGCTTCTTTGGATGACAAGGGAATGCCTTT 4804 ||| ||| | || ||||| | || ||||||||| | || || |||||| | | || Sbjct 1382 GGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTT 1441 Query 4805 TACATCTGATTTTGTTCTTGCGTCAACTAAC-CTGTCAGCCCTTAAACCACCCACTGTGT 4863 |||||| | |||||| | || || || ||| || || | ||| | || || |||| Sbjct 1442 CACATCTAAATTTGTTATCGCATCCACCAACGCTAGCA-ACATTATAGTGCCTACAGTGT 1500 Query 4864 CAGAGCCGAATGCTATTCGACGGCGATTCTTCATTGAT 4901 |||| | | || ||||| || | || | ||| ||| Sbjct 1501 CAGACTCTGACGCCATTCGTCGCAGGTTTTACATGGAT 1538 >seq643 Length=7254 Score = 78.8 bits (86), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 4687 TTATGGATGATCTGGGACAAAACCCAGATGGAGAAGA-TTGTAAGCTGCTGTGTCAAATG 4745 ||||||| || || | ||||||||||| || |||| ||| | || | ||||| ||| Sbjct 2744 TTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCA-CTATTTTGTCAGATG 2686 Query 4746 GTATCCTCAACAGAGTTTATAACCCCTATGGCTTCTTTGGATGACAAGGGAATGCCTTTT 4805 || ||| || || |||||| | |||||||| ||| |||| || |||||| | | || Sbjct 2685 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2626 Query 4806 ACATCTGATTTTGTTCTTGCGTCAACTAAC 4835 || || | ||||| |||| || |||||| Sbjct 2625 ACCTCCAAGTTTGTGATTGCCTCCACTAAC 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24500955032216