Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_016964.1
Length=7948
Score E
Sequences producing significant alignments: (Bits) Value
seq1144 156 2e-34
seq643 138 6e-29
>seq1144
Length=1302
Score = 156 bits (172), Expect = 2e-34
Identities = 335/492 (68%), Gaps = 8/492 (2%)
Strand=Plus/Plus
Query 7267 TTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAATAATA 7326
|||| |||||||| || ||||| ||| || || || || ||||| ||| | || || |
Sbjct 760 TTGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACA 819
Query 7327 TCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTAAAGA 7386
|||| |||||||| ||| | | | | | ||| ||||| | | |||||||| || |
Sbjct 820 TCATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 879
Query 7387 TTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTT-CCCATTGGATGCTTCCATT 7445
| |||| ||||| || ||||| | | | |||||||| ||||||| ||| | | |
Sbjct 880 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 939
Query 7446 TTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTCTGCA 7505
| |||| | | || ||| ||||||| ||||||||||| ||| | || || |
Sbjct 940 T-GGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGT 998
Query 7506 TTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTCTGATTCT 7565
||||||||| |||| ||||| |||| || || | ||||| | | || || | | |
Sbjct 999 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAG-AGGATTCTTGCC-AGACC 1056
Query 7566 AGC--TTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCTGCTC 7623
| | ||||| || | ||||| || | ||||||| || || ||||| || ||
Sbjct 1057 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 1116
Query 7624 GCTGGACTCGTTCGGCA-GCAACTACTGAAGAGCATATTCGCTCCCTGTGTCATCTGGCA 7682
| |||||| || ||||| || |||| || | ||||||||||||| |||||
Sbjct 1117 GATGGACTAAAGACGCGCGCAAC-ACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCA 1175
Query 7683 TGGCACAATGGAGAGGGTGATTATAACGAATTTCTTTCTCAGATTAGATCTGTCCCTGTA 7742
||||||||||| ||| ||| ||| | | ||| | | |||||||| || || ||
Sbjct 1176 TGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTT 1235
Query 7743 GGTAGAGCTTTG 7754
|| | ||| |||
Sbjct 1236 GGAAAAGCGTTG 1247
>seq643
Length=7254
Score = 138 bits (152), Expect = 6e-29
Identities = 130/162 (80%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 468 GTATTCCTCCGGCCCCTGAATGCGGCTAATCCTAACCCACTTGCACACGCTCGCAACCCA 527
||| |||||||||||||||||||||||||||||||| ||||| |||| | | |||
Sbjct 6934 GTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCA 6875
Query 528 GTGAGTGGTGTGTCGTAATGCGCAAGAAGTGGA-CGGAACCGACTACTTTGGGTGTCCGT 586
||| |||||||||||||| | |||| || | ||||||||||||||||||||||||||
Sbjct 6874 GTGGGTGGTGTGTCGTAACGGGCAA-CTCTGCAGCGGAACCGACTACTTTGGGTGTCCGT 6816
Query 587 GTTTCtttttttATTTACCAAGTCT-CTTATGGTCACAAGCA 627
||||| |||| | ||| | || |||||||| |||| ||
Sbjct 6815 GTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCA 6774
Score = 125 bits (138), Expect = 4e-25
Identities = 295/435 (68%), Gaps = 8/435 (2%)
Strand=Plus/Minus
Query 7263 GTTGTTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAAT 7322
||| |||| |||||||| || || ||| || ||||| |||||||| || ||| | ||
Sbjct 558 GTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAAC 499
Query 7323 AATATCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTA 7382
|||||||| || ||||| || | | | | | ||||| || || ||||||| |
Sbjct 498 AATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTG 439
Query 7383 AAGATTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTTCCCATTGGA-TGCTTC 7441
|| || |||| || || |||||||| | | | |||||||||||| | || || |
Sbjct 438 AACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTG 379
Query 7442 CATTTTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTC 7501
| || ||| || ||| || ||||||| | || ||||||||| | || ||| |
Sbjct 378 GAGTT-GGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACC 320
Query 7502 -TGCATTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTC-T 7559
||| || ||||| | || ||||| |||| ||| || || ||||| | | || || | |
Sbjct 319 CTGCTTT-AATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAG-AGGATTCTTGCCT 262
Query 7560 GATTCTAGCTTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCT 7619
||| | || || ||||| || || || | || |||| ||| ||||| || ||
Sbjct 261 GATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCC 202
Query 7620 GCTCGCTGGACTCGTTCGGCAGCAACTACTGAAGAGCATATTCGCTCCCTGTG-TCATCT 7678
||| ||||| ||| || |||| |||| || | |||||||| || | || |
Sbjct 201 ATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTAT-T 143
Query 7679 GGCATGGCACAATGG 7693
||||||||||| ||
Sbjct 142 AGCATGGCACAACGG 128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 25316906910656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |