Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_016964.1 Length=7948 Score E Sequences producing significant alignments: (Bits) Value seq1144 156 2e-34 seq643 138 6e-29 >seq1144 Length=1302 Score = 156 bits (172), Expect = 2e-34 Identities = 335/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 7267 TTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAATAATA 7326 |||| |||||||| || ||||| ||| || || || || ||||| ||| | || || | Sbjct 760 TTGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACA 819 Query 7327 TCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTAAAGA 7386 |||| |||||||| ||| | | | | | ||| ||||| | | |||||||| || | Sbjct 820 TCATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 879 Query 7387 TTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTT-CCCATTGGATGCTTCCATT 7445 | |||| ||||| || ||||| | | | |||||||| ||||||| ||| | | | Sbjct 880 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 939 Query 7446 TTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTCTGCA 7505 | |||| | | || ||| ||||||| ||||||||||| ||| | || || | Sbjct 940 T-GGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGT 998 Query 7506 TTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTCTGATTCT 7565 ||||||||| |||| ||||| |||| || || | ||||| | | || || | | | Sbjct 999 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAG-AGGATTCTTGCC-AGACC 1056 Query 7566 AGC--TTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCTGCTC 7623 | | ||||| || | ||||| || | ||||||| || || ||||| || || Sbjct 1057 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 1116 Query 7624 GCTGGACTCGTTCGGCA-GCAACTACTGAAGAGCATATTCGCTCCCTGTGTCATCTGGCA 7682 | |||||| || ||||| || |||| || | ||||||||||||| ||||| Sbjct 1117 GATGGACTAAAGACGCGCGCAAC-ACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCA 1175 Query 7683 TGGCACAATGGAGAGGGTGATTATAACGAATTTCTTTCTCAGATTAGATCTGTCCCTGTA 7742 ||||||||||| ||| ||| ||| | | ||| | | |||||||| || || || Sbjct 1176 TGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTT 1235 Query 7743 GGTAGAGCTTTG 7754 || | ||| ||| Sbjct 1236 GGAAAAGCGTTG 1247 >seq643 Length=7254 Score = 138 bits (152), Expect = 6e-29 Identities = 130/162 (80%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 468 GTATTCCTCCGGCCCCTGAATGCGGCTAATCCTAACCCACTTGCACACGCTCGCAACCCA 527 ||| |||||||||||||||||||||||||||||||| ||||| |||| | | ||| Sbjct 6934 GTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCA 6875 Query 528 GTGAGTGGTGTGTCGTAATGCGCAAGAAGTGGA-CGGAACCGACTACTTTGGGTGTCCGT 586 ||| |||||||||||||| | |||| || | |||||||||||||||||||||||||| Sbjct 6874 GTGGGTGGTGTGTCGTAACGGGCAA-CTCTGCAGCGGAACCGACTACTTTGGGTGTCCGT 6816 Query 587 GTTTCtttttttATTTACCAAGTCT-CTTATGGTCACAAGCA 627 ||||| |||| | ||| | || |||||||| |||| || Sbjct 6815 GTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCA 6774 Score = 125 bits (138), Expect = 4e-25 Identities = 295/435 (68%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 7263 GTTGTTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAAT 7322 ||| |||| |||||||| || || ||| || ||||| |||||||| || ||| | || Sbjct 558 GTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAAC 499 Query 7323 AATATCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTA 7382 |||||||| || ||||| || | | | | | ||||| || || ||||||| | Sbjct 498 AATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTG 439 Query 7383 AAGATTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTTCCCATTGGA-TGCTTC 7441 || || |||| || || |||||||| | | | |||||||||||| | || || | Sbjct 438 AACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTG 379 Query 7442 CATTTTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTC 7501 | || ||| || ||| || ||||||| | || ||||||||| | || ||| | Sbjct 378 GAGTT-GGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACC 320 Query 7502 -TGCATTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTC-T 7559 ||| || ||||| | || ||||| |||| ||| || || ||||| | | || || | | Sbjct 319 CTGCTTT-AATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAG-AGGATTCTTGCCT 262 Query 7560 GATTCTAGCTTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCT 7619 ||| | || || ||||| || || || | || |||| ||| ||||| || || Sbjct 261 GATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCC 202 Query 7620 GCTCGCTGGACTCGTTCGGCAGCAACTACTGAAGAGCATATTCGCTCCCTGTG-TCATCT 7678 ||| ||||| ||| || |||| |||| || | |||||||| || | || | Sbjct 201 ATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTAT-T 143 Query 7679 GGCATGGCACAATGG 7693 ||||||||||| || Sbjct 142 AGCATGGCACAACGG 128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25316906910656