Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_021178.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq643 123 1e-24 >seq643 Length=7254 Score = 123 bits (136), Expect = 1e-24 Identities = 126/159 (79%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 3849 TCCTCCGGACCCGTGAATGCGGCTAACCCTAACCCTGGATCAAGTGCTCACAAACCAGTG 3908 |||||||| ||| ||||||||||||| |||||| ||| || ||||||| |||||||| Sbjct 6930 TCCTCCGGCCCC-TGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTG 6872 Query 3909 AGTGGCTTGTCGTAACGCGCAAGTCTGGGATGGGACCGACTACTTTCGGTGTTCCGTGTT 3968 |||| |||||||||| |||| |||| || |||||||||||| |||| |||||||| Sbjct 6871 GGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTG-TCCGTGTT 6813 Query 3969 TCTATTTATT-TTATCAATAAAGTTTTATGGTGACAATC 4006 || |||||| |||| | | |||||||||||||| Sbjct 6812 TCCTTTTATTCTTAT-ATTGGCTGCTTATGGTGACAATC 6775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27995148958712