Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_026314.1
Length=7853
Score E
Sequences producing significant alignments: (Bits) Value
seq1144 113 2e-21
seq643 89.7 3e-14
>seq1144
Length=1302
Score = 113 bits (124), Expect = 2e-21
Identities = 546/857 (64%), Gaps = 26/857 (3%)
Strand=Plus/Plus
Query 6666 TGGAGGAAGC-TGCGTATGGTATCCCCGACCTCGAAGGCCTTGATCTCAACACAAGTGCT 6724
|||||||||| ||| ||||| | |||| || | |||| ||| ||| |||||
Sbjct 199 TGGAGGAAGCGTGC-TATGGCACTGAAAACCTGGAGGCAATTGACCTCTGCACTAGTGCC 257
Query 6725 GGATACCCATACACATTGAATGGAATCAAGAAGAGAGATATCCTTGACCCAGAAACAAAA 6784
|| |||||||||| ||| |||||||| ||||| || |||||||| ||| |
Sbjct 258 GGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCTTGACCCCACAACCAGG 317
Query 6785 GATA---CAAAGA--AACTTCAAGAATGCTTGGACAAGTATGGAGTGGATTTGCCTTTCA 6839
||| | |||| || ||| | | |||| || || || | ||| |||| | |
Sbjct 318 GATGTGTCTAAGATGAAATTCTATA-----TGGATAAATACGGGCTAGATCTGCCATACT 372
Query 6840 TTTCATACCTAAAAGATGAACTTAGACCATTGGAAAAGATCAAGAAAGGAAAGACAAGAA 6899
| | || | || ||||| ||||| | |||| || ||||||||||||||| || |
Sbjct 373 CTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAAGAAAGGAAAGTCACGCT 432
Query 6900 TCATTGAGTGTTCAAGCATGAATGACACAATCAGAATGAAAATGATGTTTGGAAAGCTTT 6959
| || ||| | ||| |||||||| | || | | |||| ||||| | ||||
Sbjct 433 TGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAATGGCTTTTGGGCACCTTT 492
Query 6960 TCCAGACAATGCATCGCAACCCAGGAACAATTACAGGCTCAGCTGTGGGTTGCAATCCAG 7019
|| | | ||| ||||| || || | || |||||||| |||||||| || || |
Sbjct 493 ATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGCAGTGGGTTGTAACCCGG 552
Query 7020 ACACTGATTGGA-CAAAGTTCAGAGCAGAGATGCATGATTCCATCATTGCATTTGATTAT 7078
|| ||||| |||| | | || | ||| || || || |||| ||||| ||
Sbjct 553 ACGTGTTTTGGAGCAAACTACCGATTCT-GCTGCCTGGGTCGCTCTTTGCCTTTGACTAC 611
Query 7079 TCTAACTATGATGCATCTCTGAACAAGGTCTGGTTTAAGTGCCTGAAAA-TGGTGCTAAC 7137
|| |||||||| ||| | | ||| ||||| | | || | | || | ||| ||
Sbjct 612 TCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGG-GCTTTAGAAGTTGTGTTACG 670
Query 7138 CAACCTTGGTT--TCAAAGAC--CTGGGGCC--AATCGACCACATCATCTACTCAAAACA 7191
| |||| | ||| || | | | || ||| || |||| | || | | ||
Sbjct 671 GGAGATTGGGTATTCAGAGGAGGCCGTGTCCCTAATAGAAGGGATCAACCACACCCACCA 730
Query 7192 CATCTACAAAAACATTGAGTACGATGTTGAGGGAGGGATGCCATCAGGCTGCTCTGGAAC 7251
| || |||| ||| ||| || || ||||| ||||| || ||||| ||
Sbjct 731 TGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGGTAC 790
Query 7252 ATCAATTTTCAATTCAATGATCNNNNNNNNNNNNNNNCGAACCCTGTTGCTGGATGCATA 7311
|| || || |||||||||||| ||||||| ||| | | | |
Sbjct 791 TTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAACTTT 850
Query 7312 CAAGGGAATAGACCTGGAGCAACTGAAAATGATTGCTTATGGAGATGATGTTGTAGCCAC 7371
||||||||||||||||| | |||| ||| | || ||||| || ||||| | || |
Sbjct 851 TAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAG 910
Query 7372 ATACCCATTTCCGATTGA-CGCAGCGTCA-CTGGCTGATTGCGGCAAACGGTATGGGCTG 7429
||||| ||||| ||||| || | | | ||||| | |||||| |||||| ||
Sbjct 911 TTACCCCTTTCCCATTGATTGC--CTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTG 968
Query 7430 AAAATGAcccccccTGACAAGGGGAGTGAATTCAATAATGTAACTTGGGAAAATGTAACA 7489
| ||||| || | ||||| |||||| | ||||| |||||||||| ||
Sbjct 969 ACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACC 1028
Query 7490 TTCCTAAAAAGAAGATT 7506
||||| || ||| ||||
Sbjct 1029 TTCCTGAAGAGAGGATT 1045
>seq643
Length=7254
Score = 89.7 bits (98), Expect = 3e-14
Identities = 221/330 (67%), Gaps = 4/330 (1%)
Strand=Plus/Minus
Query 6693 ACCTCGAAGGCCTTGATCTCAACACAAGTGCTGGATACCCATACACATTGAAT-GGAATC 6751
|||| |||| | ||||| |||||||||| ||||| ||||||| | | | || |||
Sbjct 1088 ACCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAG-TGCACTAGGCATC 1030
Query 6752 AAGAAGAGAGATATCCTTGACCCAGAAACAAAAGATACAAAGAAACTTCAAGAATGCTTG 6811
||||| | || || | || ||| ||| ||| | || | || | | ||
Sbjct 1029 AAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATG 970
Query 6812 GACAAGTATGGAGTGGATTTGCCTTTCATTTCATACCTAAAAGATGAACTTAGACCATTG 6871
||||||||||| ||||| | || | | | | || | |||||||||||||| | |
Sbjct 969 GACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATC 910
Query 6872 GAAAAGATCAAGAAAGGAAAGACAAGAATCATTG-AGTGTTCAAGCATGAATGACACAAT 6930
|| |||||||||||||| ||| | | |||| | || | | ||| | |||||| || |
Sbjct 909 GACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGC-AGCCTAAATGACTCAGT 851
Query 6931 CAGAATGAAAATGATGTTTGGAAAGCTTTTCCAGACAATGCATCGCAACCCAGGAACAAT 6990
||| ||||| ||||| | |||| | | | || ||| ||||| |||||
Sbjct 850 GTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAAT 791
Query 6991 TACAGGCTCAGCTGTGGGTTGCAATCCAGA 7020
|| || |||||||| || ||||| |||||
Sbjct 790 CACCGGTTCAGCTGTTGGGTGCAACCCAGA 761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 25012924838296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |