Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_026314.1 Length=7853 Score E Sequences producing significant alignments: (Bits) Value seq1144 113 2e-21 seq643 89.7 3e-14 >seq1144 Length=1302 Score = 113 bits (124), Expect = 2e-21 Identities = 546/857 (64%), Gaps = 26/857 (3%) Strand=Plus/Plus Query 6666 TGGAGGAAGC-TGCGTATGGTATCCCCGACCTCGAAGGCCTTGATCTCAACACAAGTGCT 6724 |||||||||| ||| ||||| | |||| || | |||| ||| ||| ||||| Sbjct 199 TGGAGGAAGCGTGC-TATGGCACTGAAAACCTGGAGGCAATTGACCTCTGCACTAGTGCC 257 Query 6725 GGATACCCATACACATTGAATGGAATCAAGAAGAGAGATATCCTTGACCCAGAAACAAAA 6784 || |||||||||| ||| |||||||| ||||| || |||||||| ||| | Sbjct 258 GGGTACCCATACAGCGCCCTTGGCATCAAGAAAAGAGACATTCTTGACCCCACAACCAGG 317 Query 6785 GATA---CAAAGA--AACTTCAAGAATGCTTGGACAAGTATGGAGTGGATTTGCCTTTCA 6839 ||| | |||| || ||| | | |||| || || || | ||| |||| | | Sbjct 318 GATGTGTCTAAGATGAAATTCTATA-----TGGATAAATACGGGCTAGATCTGCCATACT 372 Query 6840 TTTCATACCTAAAAGATGAACTTAGACCATTGGAAAAGATCAAGAAAGGAAAGACAAGAA 6899 | | || | || ||||| ||||| | |||| || ||||||||||||||| || | Sbjct 373 CTACCTATGTGAAGGATGAGCTTAGGTCCCTGGATAAAATCAAGAAAGGAAAGTCACGCT 432 Query 6900 TCATTGAGTGTTCAAGCATGAATGACACAATCAGAATGAAAATGATGTTTGGAAAGCTTT 6959 | || ||| | ||| |||||||| | || | | |||| ||||| | |||| Sbjct 433 TGATAGAGGCTAGTAGCTTGAATGACTCTGTCTACCTCAGAATGGCTTTTGGGCACCTTT 492 Query 6960 TCCAGACAATGCATCGCAACCCAGGAACAATTACAGGCTCAGCTGTGGGTTGCAATCCAG 7019 || | | ||| ||||| || || | || |||||||| |||||||| || || | Sbjct 493 ATGAGGCGTTTCATGCTAACCCTGGCACTGTGACTGGCTCAGCAGTGGGTTGTAACCCGG 552 Query 7020 ACACTGATTGGA-CAAAGTTCAGAGCAGAGATGCATGATTCCATCATTGCATTTGATTAT 7078 || ||||| |||| | | || | ||| || || || |||| ||||| || Sbjct 553 ACGTGTTTTGGAGCAAACTACCGATTCT-GCTGCCTGGGTCGCTCTTTGCCTTTGACTAC 611 Query 7079 TCTAACTATGATGCATCTCTGAACAAGGTCTGGTTTAAGTGCCTGAAAA-TGGTGCTAAC 7137 || |||||||| ||| | | ||| ||||| | | || | | || | ||| || Sbjct 612 TCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGG-GCTTTAGAAGTTGTGTTACG 670 Query 7138 CAACCTTGGTT--TCAAAGAC--CTGGGGCC--AATCGACCACATCATCTACTCAAAACA 7191 | |||| | ||| || | | | || ||| || |||| | || | | || Sbjct 671 GGAGATTGGGTATTCAGAGGAGGCCGTGTCCCTAATAGAAGGGATCAACCACACCCACCA 730 Query 7192 CATCTACAAAAACATTGAGTACGATGTTGAGGGAGGGATGCCATCAGGCTGCTCTGGAAC 7251 | || |||| ||| ||| || || ||||| ||||| || ||||| || Sbjct 731 TGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGGTAC 790 Query 7252 ATCAATTTTCAATTCAATGATCNNNNNNNNNNNNNNNCGAACCCTGTTGCTGGATGCATA 7311 || || || |||||||||||| ||||||| ||| | | | | Sbjct 791 TTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAACTTT 850 Query 7312 CAAGGGAATAGACCTGGAGCAACTGAAAATGATTGCTTATGGAGATGATGTTGTAGCCAC 7371 ||||||||||||||||| | |||| ||| | || ||||| || ||||| | || | Sbjct 851 TAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAG 910 Query 7372 ATACCCATTTCCGATTGA-CGCAGCGTCA-CTGGCTGATTGCGGCAAACGGTATGGGCTG 7429 ||||| ||||| ||||| || | | | ||||| | |||||| |||||| || Sbjct 911 TTACCCCTTTCCCATTGATTGC--CTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTG 968 Query 7430 AAAATGAcccccccTGACAAGGGGAGTGAATTCAATAATGTAACTTGGGAAAATGTAACA 7489 | ||||| || | ||||| |||||| | ||||| |||||||||| || Sbjct 969 ACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACC 1028 Query 7490 TTCCTAAAAAGAAGATT 7506 ||||| || ||| |||| Sbjct 1029 TTCCTGAAGAGAGGATT 1045 >seq643 Length=7254 Score = 89.7 bits (98), Expect = 3e-14 Identities = 221/330 (67%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 6693 ACCTCGAAGGCCTTGATCTCAACACAAGTGCTGGATACCCATACACATTGAAT-GGAATC 6751 |||| |||| | ||||| |||||||||| ||||| ||||||| | | | || ||| Sbjct 1088 ACCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAG-TGCACTAGGCATC 1030 Query 6752 AAGAAGAGAGATATCCTTGACCCAGAAACAAAAGATACAAAGAAACTTCAAGAATGCTTG 6811 ||||| | || || | || ||| ||| ||| | || | || | | || Sbjct 1029 AAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATG 970 Query 6812 GACAAGTATGGAGTGGATTTGCCTTTCATTTCATACCTAAAAGATGAACTTAGACCATTG 6871 ||||||||||| ||||| | || | | | | || | |||||||||||||| | | Sbjct 969 GACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATC 910 Query 6872 GAAAAGATCAAGAAAGGAAAGACAAGAATCATTG-AGTGTTCAAGCATGAATGACACAAT 6930 || |||||||||||||| ||| | | |||| | || | | ||| | |||||| || | Sbjct 909 GACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGC-AGCCTAAATGACTCAGT 851 Query 6931 CAGAATGAAAATGATGTTTGGAAAGCTTTTCCAGACAATGCATCGCAACCCAGGAACAAT 6990 ||| ||||| ||||| | |||| | | | || ||| ||||| ||||| Sbjct 850 GTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAAT 791 Query 6991 TACAGGCTCAGCTGTGGGTTGCAATCCAGA 7020 || || |||||||| || ||||| ||||| Sbjct 790 CACCGGTTCAGCTGTTGGGTGCAACCCAGA 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25012924838296