Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_029905.1 Length=7367 Score E Sequences producing significant alignments: (Bits) Value seq643 167 1e-37 seq906 123 1e-24 seq1144 116 2e-22 seq4341 82.4 4e-12 >seq643 Length=7254 Score = 167 bits (184), Expect = 1e-37 Identities = 343/495 (69%), Gaps = 34/495 (7%) Strand=Plus/Minus Query 178 CAAGCACTTCTGTTTCCCCGGAATGGGC--CCATAGGCTGTACCCACGGCTGAAAGGGAC 235 |||||||||||||||||||||| || | | |||||||| | | |||||||| | || Sbjct 7211 CAAGCACTTCTGTTTCCCCGGACTGAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGAA 7152 Query 236 CG-GCCCGTTACCCGCCTTGGTACTGCGAGAATGTTAGTAACTCCCTCGATAGCTTTAGG 294 | ||||||||| | |||| |||||| |||||| | || | || | ||| Sbjct 7151 AACGTTCGTTACCCGACCAACTACTTCGAGAAGCTTAGTACCACCAT-GAACGAGGCAGG 7093 Query 295 C-GTTACGCTCAGCCCTTTGAGCCCGAAGGGTAGTTCGGGTCGATGAGGCTCGTCATTCC 353 ||| |||||||| | | ||| || |||| || || |||||| | | || || Sbjct 7092 GTGTTTCGCTCAGCACA---ACCCC--AGTGTAGATCAGGCTGATGAGTCACTGCAACCC 7038 Query 354 CCACTGGCGACAGTGTGACTTGCCTGCGTTGGCGGCCCGGGGTGGGGGGCAACCCCCATC 413 ||| |||||| || | | || ||||||||||||| | || | || || Sbjct 7037 CCATGGGCGACCATGGCAGTGGC-TGCGTTGGCGGCCTGCCCATGGAG--AAATCCATGG 6981 Query 414 CACGC-CTACTGAAGGACAGGGTGTGAAGGCGCTATTGCGCTACTAAGGAGTCCTCCGGC 472 |||| ||| | | ||| ||||||||| |||||| |||| | ||||||||||| Sbjct 6980 GACGCTCTAATTCTG-ACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGC 6922 Query 473 CCCTGAATGCGGCTAACCCGAACCCCG-AGCCCACGGTGGTAAACCCGCCACAAGTGGGT 531 |||||||||||||||| || ||| || ||| || | | |||| | ||| || Sbjct 6921 CCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGT 6862 Query 532 CGTAATGAGTAATT-TGGGGCAGGGACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTT 590 ||||| | | || | || || || ||||||||||||||||||||||||||||| || || Sbjct 6861 CGTAACGGGCAACTCTGCAGC-GGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATT 6803 Query 591 CCATACGATGGCTGCTTATGGTGACAA--------------CCATA-AGCAATTGGATTG 635 | || ||||||||||||||||||| ||||| ||| ||||||||| Sbjct 6802 CT-TATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTG 6744 Query 636 GCCATCCGGTGTTCA 650 |||||||||||| || Sbjct 6743 GCCATCCGGTGTGCA 6729 Score = 143 bits (158), Expect = 1e-30 Identities = 605/927 (65%), Gaps = 50/927 (5%) Strand=Plus/Minus Query 6271 GGAATCAAGAAGAGGGACATACTTGATCCAAAAACA----AAGTCAACAGAAAAGATGAA 6326 || |||||||| | |||||| | ||||||| ||| | |||| || ||||||| Sbjct 1035 GGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCA----AGATGAA 980 Query 6327 ACAGTGTATGGACAAGTATGGCATTGAGCTTCCCTTTGTAACATACTTA----AAGGATG 6382 | | |||||||||||||| | || || || ||| |||||| || |||| Sbjct 979 ATTCTACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATG 924 Query 6383 AACTTAGACCTAAAGAAAAAGTTGAGCAAGGGAAAACTAGGTTAATAGAAGCCTCCAGTC 6442 ||||||| | | || || | || ||||||| || | | |||||||| ||| | Sbjct 923 AACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCC 864 Query 6443 TCAATGATTCAGT-TGCTATGAGAATGTGTTTTGGTAATTTGTACTCCAAGTTT-CATGA 6500 | ||||| ||||| | || |||||||| ||||| | | || | | ||| || | Sbjct 863 TAAATGACTCAGTGTACT-TGAGAATGACATTTGGGCACCTTTA-TGAAGCTTTCCACGC 806 Query 6501 GAATCCAGGAACAATAACAGGCTCAGCAGTTGGTTGTAATCCAGACACATTTTGGTCCAA 6560 |||||||| ||||| || || ||||| ||||| || || ||||| || ||| ||| Sbjct 805 CAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAA 746 Query 6561 GATCCCTTGTATGATGGATGGAGAATTGTTTGCTTATGACTATTCCAACTTTGATGCCAG 6620 | | || | | | ||| | || || | |||||| || | ||| || || Sbjct 745 GTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAG 686 Query 6621 TCTAAGCCCAGTTTGGTTTATGTGTTTAAAGTACGTGCTTAGACGCCTAGGAT--TTAAA 6678 ||| |||||||| ||||| | | | || || || | | |||| | | Sbjct 685 TCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGA 626 Query 6679 AGTAAACAATTAGGAT-TCATTGATTACATGTGTCACAGTACTCACGTGTATAGAGGAGT 6737 || | || | | | |||| || || ||||| ||| ||| || | | | Sbjct 625 AG-ACGCAGT--GTCTCTCATAGAAGGGATCAATCACACCCATCA--TGTGTACCGCAAT 571 Query 6738 CCAA--TATAGGGTGTCAGGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAAT 6795 || ||| | || || |||||||| |||||||| ||||| || ||||| || Sbjct 570 AAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAAC 511 Query 6796 TCTATGATTAATAATATAATTATTAGGACTTTAGT-ATTAGACACTTACAAAGGCATAGA 6854 || ||||| || ||||| |||||||| || | | |||| | || | |||||| ||||| Sbjct 510 TCGATGATCAACAATATCATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGA 452 Query 6855 TTTGGCTCAACTTAAAATTATTGCTTATGGTGATGATGTTATTTGC-AGTTATCCATT-T 6912 | | | | |||| || || | || || || ||||||| | || || ||||| || || Sbjct 451 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATG-TGTTGGCTAGTTACCCCTTCC 393 Query 6913 CAACTGGATG-CAGAACAGTTGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCC 6971 ||| || || | | ||||||||| |||||||||| ||||| || || ||||| || Sbjct 392 CAATTGACTGTCTG--GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCC 335 Query 6972 ACCAGACAAGGGTGACTCT--TTTAATGA---TACAAACTGGGTTAATGTGACATTTCTC 7026 | ||||| || || || |||||||| |||| |||| |||| || || | Sbjct 334 TGCCGACAA--GTCACCCTGCTTTAATGAGGTTACA---TGGGAGAATGCCACTTTCTTG 280 Query 7027 AAGAGGTACTTCAGAGCTGATGAAGAGTATCCTTTTTTGGTGCACCCAGTTATGCCAATG 7086 ||||| ||| ||||| | | | || ||| | | ||||| ||||||||| Sbjct 279 AAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATG 220 Query 7087 AAGGAGATCCAGGAGTCCATTCGATGGACCCGTGAGGGCGCGGA-TATTAAAGACCACGT 7145 | |||||| || || |||||||| |||||| || || || | || | |||| ||||| Sbjct 219 AGGGAGATTCACGAATCCATTCGTTGGACCAAAGA-TGCACGAAGTACTCAAGATCACGT 161 Query 7146 CCGCAGCCTTTGCTACTTGGCCTGGCA 7172 ||| ||| |||| || || ||||| Sbjct 160 GCGCTCCCTCTGCTTATTAGCATGGCA 134 Score = 118 bits (130), Expect = 5e-23 Identities = 178/248 (72%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434 ||||| ||||||| ||| ||||| || ||||| | || | ||||||| ||| | | Sbjct 2880 GGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGAC 2821 Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493 ||||| | | || | ||||| | |||||||||||| | ||||||||||| || | Sbjct 2820 AAGTACCACTCCAGT-GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAA 2762 Query 4494 TCAACAAGAT-GTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGA 4552 |||| |||| || | | ||||| || | | ||||| || || || | || ||| Sbjct 2761 ACAAC-AGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGT 2703 Query 4553 AATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAG 4612 | |||| ||||| ||||| ||||| ||||| |||| ||| || |||||||| |||| | Sbjct 2702 CACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGG 2643 Query 4613 ATAAGGGA 4620 | |||||| Sbjct 2642 AGAAGGGA 2635 >seq906 Length=2416 Score = 123 bits (136), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434 |||||||| || | ||||||||| | || || |||| | ||| | || ||| | | Sbjct 1188 GGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGAC 1247 Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493 |||||| | | || | || ||||| || |||||||| | || |||||||| ||| | Sbjct 1248 AAGTATCACTCTAGT-GTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAA 1306 Query 4494 TCAACAAGATGTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGAA 4553 || |||| || | ||||||||| || | ||||| || || || | || ||| Sbjct 1307 ACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTC 1366 Query 4554 ATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAGA 4613 |||||| || || ||||||||||||||||| |||| || |||||||| || | ||||| Sbjct 1367 ATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGA 1426 Query 4614 TAAGGGA 4620 |||||| Sbjct 1427 AAAGGGA 1433 >seq1144 Length=1302 Score = 116 bits (128), Expect = 2e-22 Identities = 296/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 6754 GGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAATTCTATGATTAATAATATA 6813 ||||||||||| ||||| ||||| || || || |||||||| ||||| || || || Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821 Query 6814 ATTATTAGGA--CTTTAGTATTAGACACTTACAAAGGCATAGATTTGGCTCAACTTAAAA 6871 || || || | |||| | || | | |||| || || ||||| ||| | | | || | Sbjct 822 ATCATCAGAACCCTTTTG-ATCA-AAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 879 Query 6872 TTATTGCTTATGGTGATGATGTTATTTGCAGTTATCCATTTCAACTGGATGCAGAACAGT 6931 | | || ||||| || ||||| | ||||| || |||| | ||| ||| Sbjct 880 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 939 Query 6932 TGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCCACCAGACAAGGGTGACTCTT 6991 |||| ||| | ||||| || ||||| |||| |||||||| ||||||| || || Sbjct 940 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTT 999 Query 6992 TTAATGATACAAACTGGGTTAATGTGACATTTCTCAAGAGGTACTTCAGAGCTGATGAAG 7051 | ||||| || |||| |||| || || || ||||| ||| | || | Sbjct 1000 TCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACC 1059 Query 7052 AGTATCCTTTTTTGGTGCACCCAGTTATGCCAATGAAGGAGATCCAGGAGTCCATTCGAT 7111 | | ||| || || | ||||| ||||| |||| |||||||| || |||||||||| Sbjct 1060 AATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGAT 1119 Query 7112 GGACCCGTGA-GGGCGCGGATATTAAAGACCACGTCCGCAGCCTTTGCTACTTGGCCTGG 7170 |||| || | |||| | | |||| ||||| ||| ||| || ||||| ||| Sbjct 1120 GGACTAAAGACGCGCGC-AACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGG 1178 Query 7171 CATTCAGGTCAGGAAGAATATGAG 7194 || ||| |||| ||||||||| Sbjct 1179 CACAATGGTAAGGATGAATATGAG 1202 >seq4341 Length=257 Score = 82.4 bits (90), Expect = 4e-12 Identities = 138/195 (71%), Gaps = 10/195 (5%) Strand=Plus/Minus Query 178 CAAGCACTTCTGTTTCCCCGGAATGGG--CCCATAGGCTGTACCCACGGCTGAAAGGGAC 235 |||||||||||||||||||||| | | | |||| ||| | | ||| |||| | || Sbjct 205 CAAGCACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCACGCGGTTGAAGGAGAA 146 Query 236 CG-GCCCGTTACCCGCCTTGGTACTGCGAGAATGTTAGTAACTCCCTCGATAGCTTTAG- 293 | | |||||| ||| || |||| |||||| |||||||| || | || |||| || Sbjct 145 AGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGA-AGCTGCAGA 87 Query 294 GCGTTACGCTCAGCCCTTTGAGCCCGAAGGGTAGTTCGGGTCGATGAGGCTCGTCATTCC 353 | ||| ||||| || ||| || | |||| || |||||||||| | | || ||| Sbjct 86 GTGTTTCGCTCGGCACTT-----CCCCCGTGTAGATCAGGTCGATGAGTCACTGCAATCC 32 Query 354 CCACTGGCGACAGTG 368 |||| || ||| ||| Sbjct 31 CCACGGGTGACCGTG 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23457816552328