Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_029905.1
Length=7367
Score E
Sequences producing significant alignments: (Bits) Value
seq643 167 1e-37
seq906 123 1e-24
seq1144 116 2e-22
seq4341 82.4 4e-12
>seq643
Length=7254
Score = 167 bits (184), Expect = 1e-37
Identities = 343/495 (69%), Gaps = 34/495 (7%)
Strand=Plus/Minus
Query 178 CAAGCACTTCTGTTTCCCCGGAATGGGC--CCATAGGCTGTACCCACGGCTGAAAGGGAC 235
|||||||||||||||||||||| || | | |||||||| | | |||||||| | ||
Sbjct 7211 CAAGCACTTCTGTTTCCCCGGACTGAGTATCAATAGGCTGCTCGCGCGGCTGAAGGAGAA 7152
Query 236 CG-GCCCGTTACCCGCCTTGGTACTGCGAGAATGTTAGTAACTCCCTCGATAGCTTTAGG 294
| ||||||||| | |||| |||||| |||||| | || | || | |||
Sbjct 7151 AACGTTCGTTACCCGACCAACTACTTCGAGAAGCTTAGTACCACCAT-GAACGAGGCAGG 7093
Query 295 C-GTTACGCTCAGCCCTTTGAGCCCGAAGGGTAGTTCGGGTCGATGAGGCTCGTCATTCC 353
||| |||||||| | | ||| || |||| || || |||||| | | || ||
Sbjct 7092 GTGTTTCGCTCAGCACA---ACCCC--AGTGTAGATCAGGCTGATGAGTCACTGCAACCC 7038
Query 354 CCACTGGCGACAGTGTGACTTGCCTGCGTTGGCGGCCCGGGGTGGGGGGCAACCCCCATC 413
||| |||||| || | | || ||||||||||||| | || | || ||
Sbjct 7037 CCATGGGCGACCATGGCAGTGGC-TGCGTTGGCGGCCTGCCCATGGAG--AAATCCATGG 6981
Query 414 CACGC-CTACTGAAGGACAGGGTGTGAAGGCGCTATTGCGCTACTAAGGAGTCCTCCGGC 472
|||| ||| | | ||| ||||||||| |||||| |||| | |||||||||||
Sbjct 6980 GACGCTCTAATTCTG-ACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGC 6922
Query 473 CCCTGAATGCGGCTAACCCGAACCCCG-AGCCCACGGTGGTAAACCCGCCACAAGTGGGT 531
|||||||||||||||| || ||| || ||| || | | |||| | ||| ||
Sbjct 6921 CCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGT 6862
Query 532 CGTAATGAGTAATT-TGGGGCAGGGACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTT 590
||||| | | || | || || || ||||||||||||||||||||||||||||| || ||
Sbjct 6861 CGTAACGGGCAACTCTGCAGC-GGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATT 6803
Query 591 CCATACGATGGCTGCTTATGGTGACAA--------------CCATA-AGCAATTGGATTG 635
| || ||||||||||||||||||| ||||| ||| |||||||||
Sbjct 6802 CT-TATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTG 6744
Query 636 GCCATCCGGTGTTCA 650
|||||||||||| ||
Sbjct 6743 GCCATCCGGTGTGCA 6729
Score = 143 bits (158), Expect = 1e-30
Identities = 605/927 (65%), Gaps = 50/927 (5%)
Strand=Plus/Minus
Query 6271 GGAATCAAGAAGAGGGACATACTTGATCCAAAAACA----AAGTCAACAGAAAAGATGAA 6326
|| |||||||| | |||||| | ||||||| ||| | |||| || |||||||
Sbjct 1035 GGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCA----AGATGAA 980
Query 6327 ACAGTGTATGGACAAGTATGGCATTGAGCTTCCCTTTGTAACATACTTA----AAGGATG 6382
| | |||||||||||||| | || || || ||| |||||| || ||||
Sbjct 979 ATTCTACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATG 924
Query 6383 AACTTAGACCTAAAGAAAAAGTTGAGCAAGGGAAAACTAGGTTAATAGAAGCCTCCAGTC 6442
||||||| | | || || | || ||||||| || | | |||||||| ||| |
Sbjct 923 AACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCC 864
Query 6443 TCAATGATTCAGT-TGCTATGAGAATGTGTTTTGGTAATTTGTACTCCAAGTTT-CATGA 6500
| ||||| ||||| | || |||||||| ||||| | | || | | ||| || |
Sbjct 863 TAAATGACTCAGTGTACT-TGAGAATGACATTTGGGCACCTTTA-TGAAGCTTTCCACGC 806
Query 6501 GAATCCAGGAACAATAACAGGCTCAGCAGTTGGTTGTAATCCAGACACATTTTGGTCCAA 6560
|||||||| ||||| || || ||||| ||||| || || ||||| || ||| |||
Sbjct 805 CAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAA 746
Query 6561 GATCCCTTGTATGATGGATGGAGAATTGTTTGCTTATGACTATTCCAACTTTGATGCCAG 6620
| | || | | | ||| | || || | |||||| || | ||| || ||
Sbjct 745 GTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAG 686
Query 6621 TCTAAGCCCAGTTTGGTTTATGTGTTTAAAGTACGTGCTTAGACGCCTAGGAT--TTAAA 6678
||| |||||||| ||||| | | | || || || | | |||| | |
Sbjct 685 TCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGA 626
Query 6679 AGTAAACAATTAGGAT-TCATTGATTACATGTGTCACAGTACTCACGTGTATAGAGGAGT 6737
|| | || | | | |||| || || ||||| ||| ||| || | | |
Sbjct 625 AG-ACGCAGT--GTCTCTCATAGAAGGGATCAATCACACCCATCA--TGTGTACCGCAAT 571
Query 6738 CCAA--TATAGGGTGTCAGGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAAT 6795
|| ||| | || || |||||||| |||||||| ||||| || ||||| ||
Sbjct 570 AAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAAC 511
Query 6796 TCTATGATTAATAATATAATTATTAGGACTTTAGT-ATTAGACACTTACAAAGGCATAGA 6854
|| ||||| || ||||| |||||||| || | | |||| | || | |||||| |||||
Sbjct 510 TCGATGATCAACAATATCATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGA 452
Query 6855 TTTGGCTCAACTTAAAATTATTGCTTATGGTGATGATGTTATTTGC-AGTTATCCATT-T 6912
| | | | |||| || || | || || || ||||||| | || || ||||| || ||
Sbjct 451 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATG-TGTTGGCTAGTTACCCCTTCC 393
Query 6913 CAACTGGATG-CAGAACAGTTGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCC 6971
||| || || | | ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct 392 CAATTGACTGTCTG--GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCC 335
Query 6972 ACCAGACAAGGGTGACTCT--TTTAATGA---TACAAACTGGGTTAATGTGACATTTCTC 7026
| ||||| || || || |||||||| |||| |||| |||| || || |
Sbjct 334 TGCCGACAA--GTCACCCTGCTTTAATGAGGTTACA---TGGGAGAATGCCACTTTCTTG 280
Query 7027 AAGAGGTACTTCAGAGCTGATGAAGAGTATCCTTTTTTGGTGCACCCAGTTATGCCAATG 7086
||||| ||| ||||| | | | || ||| | | ||||| |||||||||
Sbjct 279 AAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATG 220
Query 7087 AAGGAGATCCAGGAGTCCATTCGATGGACCCGTGAGGGCGCGGA-TATTAAAGACCACGT 7145
| |||||| || || |||||||| |||||| || || || | || | |||| |||||
Sbjct 219 AGGGAGATTCACGAATCCATTCGTTGGACCAAAGA-TGCACGAAGTACTCAAGATCACGT 161
Query 7146 CCGCAGCCTTTGCTACTTGGCCTGGCA 7172
||| ||| |||| || || |||||
Sbjct 160 GCGCTCCCTCTGCTTATTAGCATGGCA 134
Score = 118 bits (130), Expect = 5e-23
Identities = 178/248 (72%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434
||||| ||||||| ||| ||||| || ||||| | || | ||||||| ||| | |
Sbjct 2880 GGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGAC 2821
Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493
||||| | | || | ||||| | |||||||||||| | ||||||||||| || |
Sbjct 2820 AAGTACCACTCCAGT-GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAA 2762
Query 4494 TCAACAAGAT-GTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGA 4552
|||| |||| || | | ||||| || | | ||||| || || || | || |||
Sbjct 2761 ACAAC-AGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGT 2703
Query 4553 AATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAG 4612
| |||| ||||| ||||| ||||| ||||| |||| ||| || |||||||| |||| |
Sbjct 2702 CACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGG 2643
Query 4613 ATAAGGGA 4620
| ||||||
Sbjct 2642 AGAAGGGA 2635
>seq906
Length=2416
Score = 123 bits (136), Expect = 1e-24
Identities = 177/247 (72%), Gaps = 2/247 (1%)
Strand=Plus/Plus
Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434
|||||||| || | ||||||||| | || || |||| | ||| | || ||| | |
Sbjct 1188 GGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGAC 1247
Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493
|||||| | | || | || ||||| || |||||||| | || |||||||| ||| |
Sbjct 1248 AAGTATCACTCTAGT-GTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAA 1306
Query 4494 TCAACAAGATGTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGAA 4553
|| |||| || | ||||||||| || | ||||| || || || | || |||
Sbjct 1307 ACAGCAAGTGGTCACAGTTATGGATGATCTGTGTCAAAACCCTGACGGCAAAGACATGTC 1366
Query 4554 ATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAGA 4613
|||||| || || ||||||||||||||||| |||| || |||||||| || | |||||
Sbjct 1367 ATTATTTTGCCAGATGGTGTCCACCGTGGATTTTATCCCACCAATGGCTTCTCTCGAAGA 1426
Query 4614 TAAGGGA 4620
||||||
Sbjct 1427 AAAGGGA 1433
>seq1144
Length=1302
Score = 116 bits (128), Expect = 2e-22
Identities = 296/444 (67%), Gaps = 6/444 (1%)
Strand=Plus/Plus
Query 6754 GGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAATTCTATGATTAATAATATA 6813
||||||||||| ||||| ||||| || || || |||||||| ||||| || || ||
Sbjct 762 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 821
Query 6814 ATTATTAGGA--CTTTAGTATTAGACACTTACAAAGGCATAGATTTGGCTCAACTTAAAA 6871
|| || || | |||| | || | | |||| || || ||||| ||| | | | || |
Sbjct 822 ATCATCAGAACCCTTTTG-ATCA-AAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 879
Query 6872 TTATTGCTTATGGTGATGATGTTATTTGCAGTTATCCATTTCAACTGGATGCAGAACAGT 6931
| | || ||||| || ||||| | ||||| || |||| | ||| |||
Sbjct 880 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 939
Query 6932 TGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCCACCAGACAAGGGTGACTCTT 6991
|||| ||| | ||||| || ||||| |||| |||||||| ||||||| || ||
Sbjct 940 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTT 999
Query 6992 TTAATGATACAAACTGGGTTAATGTGACATTTCTCAAGAGGTACTTCAGAGCTGATGAAG 7051
| ||||| || |||| |||| || || || ||||| ||| | || |
Sbjct 1000 TCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACC 1059
Query 7052 AGTATCCTTTTTTGGTGCACCCAGTTATGCCAATGAAGGAGATCCAGGAGTCCATTCGAT 7111
| | ||| || || | ||||| ||||| |||| |||||||| || ||||||||||
Sbjct 1060 AATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGAT 1119
Query 7112 GGACCCGTGA-GGGCGCGGATATTAAAGACCACGTCCGCAGCCTTTGCTACTTGGCCTGG 7170
|||| || | |||| | | |||| ||||| ||| ||| || ||||| |||
Sbjct 1120 GGACTAAAGACGCGCGC-AACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGG 1178
Query 7171 CATTCAGGTCAGGAAGAATATGAG 7194
|| ||| |||| |||||||||
Sbjct 1179 CACAATGGTAAGGATGAATATGAG 1202
>seq4341
Length=257
Score = 82.4 bits (90), Expect = 4e-12
Identities = 138/195 (71%), Gaps = 10/195 (5%)
Strand=Plus/Minus
Query 178 CAAGCACTTCTGTTTCCCCGGAATGGG--CCCATAGGCTGTACCCACGGCTGAAAGGGAC 235
|||||||||||||||||||||| | | | |||| ||| | | ||| |||| | ||
Sbjct 205 CAAGCACTTCTGTTTCCCCGGACCGAGTATCAATAGACTGCTCACGCGGTTGAAGGAGAA 146
Query 236 CG-GCCCGTTACCCGCCTTGGTACTGCGAGAATGTTAGTAACTCCCTCGATAGCTTTAG- 293
| | |||||| ||| || |||| |||||| |||||||| || | || |||| ||
Sbjct 145 AGCGTCCGTTATCCGGCTAACTACTTCGAGAAACTTAGTAACACCATTGA-AGCTGCAGA 87
Query 294 GCGTTACGCTCAGCCCTTTGAGCCCGAAGGGTAGTTCGGGTCGATGAGGCTCGTCATTCC 353
| ||| ||||| || ||| || | |||| || |||||||||| | | || |||
Sbjct 86 GTGTTTCGCTCGGCACTT-----CCCCCGTGTAGATCAGGTCGATGAGTCACTGCAATCC 32
Query 354 CCACTGGCGACAGTG 368
|||| || ||| |||
Sbjct 31 CCACGGGTGACCGTG 17
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23457816552328
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