Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24] 5,242 sequences; 49,016,728 total letters Query= NC_033820.1 Length=7746 Score E Sequences producing significant alignments: (Bits) Value seq906 114 6e-22 seq643 98.7 5e-17 >seq906 Length=2416 Score = 114 bits (126), Expect = 6e-22 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 4750 CCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA---TTATGGAT 4806 || |||||||| | ||||||| || |||| | |||| ||||||| |||||||| Sbjct 1275 CCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAA---GTGGTCACAGTTATGGAT 1331 Query 4807 GATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATGGTTTCAACT 4866 ||| | | || ||||| || || | |||||||| || ||||| |||||||| || || Sbjct 1332 GATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACC 1391 Query 4867 GTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTTCTTTCTGAG 4926 || ||| |||||||| |||||||| | ||||| ||||| ||| | || ||| | Sbjct 1392 GTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTTCACATCTAAA 1451 Query 4927 TTTGTGTTAGCTTCCACCAA 4946 ||||| | || |||||||| Sbjct 1452 TTTGTTATCGCATCCACCAA 1471 >seq643 Length=7254 Score = 98.7 bits (108), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 4741 TATTCCTTACCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA-- 4798 ||||||||||| ||||||||| | | ||||| || || | | ||| | | |||| Sbjct 2802 TATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAA---CAACAGATCGTCACT 2746 Query 4799 -TTATGGATGATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATG 4857 ||||||| || || |||| |||||||| || | |||||||| | |||||||||||| Sbjct 2745 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2686 Query 4858 GTTTCAACTGTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTT 4917 || || || || ||| || || || ||||| || | || || ||||| || | || Sbjct 2685 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2626 Query 4918 CTTTCTGAGTTTGTGTTAGCTTCCACCAA 4946 || |||||||| | || ||||| || Sbjct 2625 ACCTCCAAGTTTGTGATTGCCTCCACTAA 2597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24670545030480