Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20murrelli_20[genbank_20GCA_5F001447425.1_202015-11-24]
5,242 sequences; 49,016,728 total letters
Query= NC_033820.1
Length=7746
Score E
Sequences producing significant alignments: (Bits) Value
seq906 114 6e-22
seq643 98.7 5e-17
>seq906
Length=2416
Score = 114 bits (126), Expect = 6e-22
Identities = 146/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Plus
Query 4750 CCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA---TTATGGAT 4806
|| |||||||| | ||||||| || |||| | |||| ||||||| ||||||||
Sbjct 1275 CCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAA---GTGGTCACAGTTATGGAT 1331
Query 4807 GATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATGGTTTCAACT 4866
||| | | || ||||| || || | |||||||| || ||||| |||||||| || ||
Sbjct 1332 GATCTGTGTCAAAACCCTGACGGCAAAGACATGTCATTATTTTGCCAGATGGTGTCCACC 1391
Query 4867 GTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTTCTTTCTGAG 4926
|| ||| |||||||| |||||||| | ||||| ||||| ||| | || ||| |
Sbjct 1392 GTGGATTTTATCCCACCAATGGCTTCTCTCGAAGAAAAGGGAGTTTCCTTCACATCTAAA 1451
Query 4927 TTTGTGTTAGCTTCCACCAA 4946
||||| | || ||||||||
Sbjct 1452 TTTGTTATCGCATCCACCAA 1471
>seq643
Length=7254
Score = 98.7 bits (108), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 4741 TATTCCTTACCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA-- 4798
||||||||||| ||||||||| | | ||||| || || | | ||| | | ||||
Sbjct 2802 TATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAA---CAACAGATCGTCACT 2746
Query 4799 -TTATGGATGATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATG 4857
||||||| || || |||| |||||||| || | |||||||| | ||||||||||||
Sbjct 2745 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2686
Query 4858 GTTTCAACTGTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTT 4917
|| || || || ||| || || || ||||| || | || || ||||| || | ||
Sbjct 2685 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2626
Query 4918 CTTTCTGAGTTTGTGTTAGCTTCCACCAA 4946
|| |||||||| | || ||||| ||
Sbjct 2625 ACCTCCAAGTTTGTGATTGCCTCCACTAA 2597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24670545030480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |