Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_001430.1
Length=7390
Score E
Sequences producing significant alignments: (Bits) Value
seq4094 313 1e-81
seq4083 149 3e-32
seq1 136 2e-28
seq4303 91.5 7e-15
>seq4094
Length=3074
Score = 313 bits (346), Expect = 1e-81
Identities = 645/937 (69%), Gaps = 52/937 (6%)
Strand=Plus/Plus
Query 391 CCATGGGACGCTAGT-TGTGAACAAGGTGCGAAGAGCCTATTGAGCTACCTGAGAGTCCT 449
|||| ||||||| || | ||| ||||||||||| ||||||||||| | |||||
Sbjct 11 CCATAGGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCT 70
Query 450 CCGGCCCCTGAATGCGGCTAATCCCAACCACGGAGCAAATGCTCACAATCCAGTGAGTGG 509
|||||||||||||||||||||||| ||| ||||||| |||| |||||||| | || |
Sbjct 71 CCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAG 130
Query 510 TTTGTCGTAATGCGCAAGTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTT 569
| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 131 TGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTT 190
Query 570 TATTTTTATTATGGCTGCTTATGGTGACAATCTGAGA-TTGTTATCATATAGCTATTGGA 628
|||| |||| ||||||||||||||||||||| ||| |||||| |||||||||||||||
Sbjct 191 TATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGA 250
Query 629 TTAGCCATCCG--GTGATATCTTGAAATTTTGCCATAACTTTTTCACAAATCCTACAACA 686
|| |||||||| ||| | | |||| | | || | || | | | | ||
Sbjct 251 TTGGCCATCCGGTGTGCAACAGGGCAATTGT----TTACCTATTTATTGGTTTTGTACCA 306
Query 687 TTA-CACTACACTTT-------CTCTTGAA-TAATTGAGA----CAAC----TCATA-AT 728
||| |||| | | | |||| || | ||| || |||| ||| | ||
Sbjct 307 TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACAT 366
Query 729 GGGAGCACAAGTTTCTAGACAACAAACTGGCACGCATGAGAATGCTAACGTTGCCACTGG 788
||| |||| || || | ||||| | || | || || || ||||| || || |
Sbjct 367 GGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTACCGA 426
Query 789 AGGCTCAAGCATAACTTACAATCAAATAAATTTCTACAAAGATAGTTATGCAGCCTCAGC 848
|| || | |||| || | | || |||| ||| |||||| ||||| ||| ||||
Sbjct 427 GGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGC 486
Query 849 TAGTAAACA-AGATTTCAGCCAAGACCCATCCAAGTTCACAGAGCCTGT---AG-CTGAA 903
|||| || || || || || |||||| |||||| || | ||||| || |
Sbjct 487 AGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCT 545
Query 904 GCCCTAAAAGCTGG-AGCCCCAGTCCTAAAATCACCATCAGCAGAGGCTTGTGGTTATAG 962
| || ||| ||| ||| ||| ||||||| ||||| || ||||| |||||||| ||
Sbjct 546 TCACTGAAA--TGGCAGCGCCA---TTAAAATCTCCATCTGCTGAGGCATGTGGTTACAG 600
Query 963 TGACAGGGTCTTACAGCTCAAATTAGGAAATTCCAGTATAGTTACCCAAGAAGCAGCTAA 1022
||| |||| ||| | | | || ||||| | || ||| ||||||||||| ||
Sbjct 601 TGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAA 660
Query 1023 CAT--TTGTTGTGCCTATGGAGAGTGGCCCACCTATCTACCTGATAATGAGGCAGTGGCT 1080
||| | || || |||||| |||||||| |||| | || ||| || ||
Sbjct 661 CATCATAGT--TGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCA 718
Query 1081 ATTGATAAACCTACCCAGCCAGAAACATCCACAGATAGATTTTACACTTTAAAATCCAAG 1140
| || ||||| || | ||||| || |||| |||||||| || | | ||
Sbjct 719 GTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAA 778
Query 1141 AAATGGGA-AAG-CAACAGTACTGGGTGGTGGTGGAAGCTCCCTGATGCTTTGAATCAAA 1198
||||| ||| || | | ||||||| ||||| |||| |||| || | | |||
Sbjct 779 TTGTGGGAGAAGTCATC--CAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAA 836
Query 1199 TTGGTATGTTTGGTCAAAACGTCCAATACCACTACCTGTATAGGAGTGGGTTCCTGTGC- 1257
|| | ||||||||||| | || | ||||||||| ||| || |||||| |||
Sbjct 837 CCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTC---TGCA 893
Query 1258 --CACGTACAATGCAATGCTACAAAATTTCACCAAGG 1292
||||| || |||||||||| || || ||||||||
Sbjct 894 TTCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 930
Score = 91.5 bits (100), Expect = 7e-15
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 1996 TATTACACCCACTGGTCTGGTTCACTGGAGATGACTTTCATGTTTTGTGGGAGCTTTATG 2055
|| |||||||| ||||| || |||||||| | || |||||||| ||| |||||||
Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749
Query 2056 ACCACAGGTAAATTGATCATTTGCTACACACCACCTGGTGG-ATCTAGCCCAACAGATAG 2114
| || || || || |||| ||||||||||| || || || ||||| || |
Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAA-GGACCG 1808
Query 2115 GATGCAAGCCATGCTAGCTACTCATGTGGTGTGGGACTTTGGGCTGCAATCTAGTATCAC 2174
| | |||||| | | || || || | |||||||||||||||||||| | ||||
Sbjct 1809 GGCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCAC 1868
Query 2175 CATTATAATTCCTTGGATC 2193
| || |||| || ||||||
Sbjct 1869 CCTTGTAATACCATGGATC 1887
>seq4083
Length=3246
Score = 149 bits (164), Expect = 3e-32
Identities = 246/351 (70%), Gaps = 18/351 (5%)
Strand=Plus/Minus
Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413
||||| |||||||| | ||| |||||| || ||| || || ||||| ||||||||| |
Sbjct 2959 GAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGC 2900
Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473
||| || |||||||| ||||| | || || || || || || ||||||||||||
Sbjct 2899 AAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCA 2840
Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACT-GGGTGGGGATTCT 4527
||||| | | ||||| ||||| || |||| || ||| ||| | ||||
Sbjct 2839 TTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCC 2780
Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTC-CT 4586
| | || || || ||| | | ||||| || || |||||||||| | ||| ||
Sbjct 2779 T------TACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGA---TCGTCACT 2729
Query 4587 G--ATGGATGACTTAATGCAAAATCCAGATGGTAATGATATTGCTATGTTTTGTCAGATG 4644
| ||||| ||| || ||||| ||||| || || || || | | ||||||||||||
Sbjct 2728 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2669
Query 4645 GTATCTACTGTAGACTTTATACCACCAATGGCCAGTCTTGAGGAAAAGGGA 4695
|| || || || || |||||||| || ||||| ||| ||||| ||||||
Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGA 2618
Score = 140 bits (154), Expect = 2e-29
Identities = 277/408 (68%), Gaps = 4/408 (1%)
Strand=Plus/Minus
Query 6864 CAAAGGTATTGATTTAGATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAG 6923
|||||| || ||| ||||| | | || ||| | || || || |||||||| | |||||
Sbjct 446 CAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAG 387
Query 6924 TTACCCACATGAGATAGAC--CCTGGCCTATTGGCAAAAGCCGGGAAAGAGTATGGATTA 6981
|||||| || ||| |||| ||||||| | | || || |||||||| ||
Sbjct 386 TTACCCCTTCCCAATTGACTGTCTGG--AGTTGGCAAGAACAGGCAAGGAGTATGGTCTA 329
Query 6982 ATAATGACCCCAGCAGACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACC 7041
| |||||||| || |||||| | |||| |||| ||| |||||||||| ||
Sbjct 328 ACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACT 269
Query 7042 TTTTTGAAGAGGTATTTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATG 7101
|| |||||||| ||| | ||| | || | || ||| | |||||||| |||
Sbjct 268 TTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATG 209
Query 7102 CCAATGAAGGAAATCCATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGAT 7161
||||||| ||| || || || || ||| | ||||| |||||| | ||| || ||||||
Sbjct 208 CCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGAT 149
Query 7162 CATGTGAGATCCTTGTGCCTACTKGCCTGGCACAATGGTGAAGAAACTTACAATGAATTC 7221
|| ||| | ||| | ||| || | || |||||||| || |||| || | ||||
Sbjct 148 CACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGAAAAATTT 89
Query 7222 TGCAGGAAAATCAGAACTGTACCTGTAGGAAGAGCTTTAGCTTTACCA 7269
|| ||||||| | || || | |||| ||| || ||| |||||
Sbjct 88 GTGAGTGCAATCAGATCAGTTCCAATTGGAAAAGCATTGGCTATACCA 41
Score = 116 bits (128), Expect = 2e-22
Identities = 599/937 (64%), Gaps = 40/937 (4%)
Strand=Plus/Minus
Query 5752 TATGGTTTCCTTAATCTTGGGGGGACCCCCACCCACAGAATATTAATGTATAACTTCCCC 5811
||||| || | || ||| | || | ||||| ||||| | | ||||| || |||||
Sbjct 1573 TATGGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCA 1514
Query 5812 ACAAGAGCAGGACAATGTGGAGGGGTGGTGACCACCACTGGTAAAGTGATTGGCATTCAC 5871
|||| ||||||||| ||||| || || ||||| || |||||||||||||| || |||
Sbjct 1513 ACAAAAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCAC 1454
Query 5872 GTTGGTGGCAATGGTGCGCAAGGCTTT---GCTGCCATGCTATTGCAAAATTACTTTACT 5928
|||||||||| ||| |||||| || |||||| || | | | | ||| |
Sbjct 1453 ATTGGTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACT--TTTGCA 1396
Query 5929 GAGAAGCAGGGTGAGATAGTATCCATTGAGA---------AAACTGGAGTCTTTA---TA 5976
| ||| || |||||||| || || || ||||||| || | |
Sbjct 1395 GTGAA-CAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACATC 1337
Query 5977 AATGCGCCAGCTAAAACCAAATTAGAACCTAGTGTCTTCCATGAAGTATTTGAGGGAGTT 6036
|| | || || || || | ||||| |||||||| || || || || || || |
Sbjct 1336 AACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACT 1277
Query 6037 AAGGAACCTGCAGTTTTACATAGCAAGGACAAGAGACTGAAGGTAGATTTTGAGGAAGCA 6096
|| || || ||||| | ||| || ||| || ||| | || || ||||| | ||
Sbjct 1276 AAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCT 1217
Query 6097 ATATTTTCCAAATACGTTGGTAACAAAAC-CATGCTAATGGATGAGTACATGGAGGAGGC 6155
| ||||| |||||||| || |||| |||| | || |||| | |||||||
Sbjct 1216 CTTTTTTCAAAATACGTGGGGAACACGCTTCATGA-ACCCGACGAGTTTGTCAAGGAGGC 1158
Query 6156 AGTGGACCACTATGTAGGTTGTTTAGAGCCCCTTGATATTAGCACCGAACCCA--TTAAA 6213
| || |||| | ||| | ||||| | ||| ||| | | |
Sbjct 1157 GGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACC--ACCAAGATGAGC 1100
Query 6214 TTAGAAGAAGCCATGT-ATGGTATGGATGGCCTTGAAGCCTTGGACCT-CACTACCAGTG 6271
| || || || |||| | || | || ||| ||||| | || || ||| || ||||
Sbjct 1099 ATGGAGGATGC-ATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAGTG 1042
Query 6272 CTGGCTACCCATACTTGTTGCAG--GGGAAGAAGAAAAGAGACATCTTCAACAGACAAAC 6329
| || || |||||| |||| || | ||||||| ||||| || | | |||
Sbjct 1041 CAGGATATCCATACAG--TGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 984
Query 6330 TAGAGATA-CAACAGAGATGACCAAAATGT---TGGACAAATATGGTGTGGATTTGCCCT 6385
| | ||| || || |||||| || | | ||||||| ||||| ||||| | || |
Sbjct 983 TCGCGATGTCAGCA-AGATGA---AATTCTACATGGACAAGTATGGGTTGGATCTACCGT 928
Query 6386 TTGTCACATTTGTCAAAGATGAACTCAGAAGCAGAGAGAAAGTAGAGAAGGGCAAGTCTA 6445
|| | ||| ||||||||||| || || || || | |||| || ||||||
Sbjct 927 ACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTC 868
Query 6446 GATTGATTGAAGCTAGTTCTTTAAATGATTCAGTTGCCATGCGAGTGGCATTTGGAAACC 6505
| | || ||||| || ||||||| ||||| | || || || ||||||| |||
Sbjct 867 GTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACC 808
Query 6506 TTTATGCAACATTCCACAAAAATCCAGGAGTCGCCACTGGGAGCGCTGTTGGATGTGATC 6565
|||||| | | |||||| |||||||| ||| || |||||||| || | |
Sbjct 807 TTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACC 748
Query 6566 CAGATTTGTTTTGGTCCAAAATCCCAGTTATSTTAGATGGAAAAATTTTTGCATTTGACT 6625
||||| |||| ||| ||| | ||| || | | ||| |||| || |||||||
Sbjct 747 CAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACT 688
Query 6626 ACACAGGTTATGATGCCAGTCTCTCACCAGTCTGGTT 6662
|| | || ||||| || |||||| ||||| |||||
Sbjct 687 ACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTT 651
>seq1
Length=805
Score = 136 bits (150), Expect = 2e-28
Identities = 225/324 (69%), Gaps = 6/324 (2%)
Strand=Plus/Plus
Query 6880 GATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAGTTACCCACATGAGATA 6939
||| |||| || ||| | || ||||| || ||||| | ||||||||||| | ||
Sbjct 373 GATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATT 432
Query 6940 GACCCTGGCCTA---TTGGCAAAAGCCGGGAAAGAGTATGGATTAATAATGACCCCAGCA 6996
|| | |||| ||||| || | || ||||||||||| || | ||||| || |||
Sbjct 433 GA---TTGCCTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCA 489
Query 6997 GACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACCTTTTTGAAGAGGTAT 7056
||||| |||| | ||| || ||||| |||| |||||| |||||||
Sbjct 490 GACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGA 549
Query 7057 TTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATGCCAATGAAGGAAATC 7116
||| |||| | || | ||| || || || ||||| ||||| |||| || |||
Sbjct 550 TTCTTGCCAGACCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATC 609
Query 7117 CATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGATCATGTGAGATCCTTG 7176
||||| || ||| ||||||| ||||| || | ||||| |||||||| ||| | ||| ||
Sbjct 610 CATGAATCCATTCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTG 669
Query 7177 TGCCTACTKGCCTGGCACAATGGT 7200
|| || | || ||||||||||||
Sbjct 670 TGTCTGTTGGCATGGCACAATGGT 693
>seq4303
Length=1160
Score = 91.5 bits (100), Expect = 7e-15
Identities = 172/251 (69%), Gaps = 18/251 (7%)
Strand=Plus/Plus
Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413
||||||||| | || | || |||| | || ||| ||||||||||| ||||||||| |
Sbjct 913 GAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGC 972
Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473
||| || |||||||| |||||| | || || || || ||||||||||| |||||
Sbjct 973 AAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCC 1032
Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACT-GGGTGGGGATTCT 4527
| || | ||||||| | | || |||| || ||| ||| |
Sbjct 1033 CTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTG------ 1086
Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTC--- 4584
|||||||| ||||| || || | ||||||| ||||||||||| || |||||||
Sbjct 1087 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCA---AGTGGTCACA 1143
Query 4585 CTGATGGATGA 4595
| ||||||||
Sbjct 1144 GTTATGGATGA 1154
Lambda K H
0.634 0.408 0.913
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23531623742408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |