Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_001430.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq4094 313 1e-81 seq4083 149 3e-32 seq1 136 2e-28 seq4303 91.5 7e-15 >seq4094 Length=3074 Score = 313 bits (346), Expect = 1e-81 Identities = 645/937 (69%), Gaps = 52/937 (6%) Strand=Plus/Plus Query 391 CCATGGGACGCTAGT-TGTGAACAAGGTGCGAAGAGCCTATTGAGCTACCTGAGAGTCCT 449 |||| ||||||| || | ||| ||||||||||| ||||||||||| | ||||| Sbjct 11 CCATAGGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCT 70 Query 450 CCGGCCCCTGAATGCGGCTAATCCCAACCACGGAGCAAATGCTCACAATCCAGTGAGTGG 509 |||||||||||||||||||||||| ||| ||||||| |||| |||||||| | || | Sbjct 71 CCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAG 130 Query 510 TTTGTCGTAATGCGCAAGTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTT 569 | |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 131 TGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTT 190 Query 570 TATTTTTATTATGGCTGCTTATGGTGACAATCTGAGA-TTGTTATCATATAGCTATTGGA 628 |||| |||| ||||||||||||||||||||| ||| |||||| ||||||||||||||| Sbjct 191 TATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGA 250 Query 629 TTAGCCATCCG--GTGATATCTTGAAATTTTGCCATAACTTTTTCACAAATCCTACAACA 686 || |||||||| ||| | | |||| | | || | || | | | | || Sbjct 251 TTGGCCATCCGGTGTGCAACAGGGCAATTGT----TTACCTATTTATTGGTTTTGTACCA 306 Query 687 TTA-CACTACACTTT-------CTCTTGAA-TAATTGAGA----CAAC----TCATA-AT 728 ||| |||| | | | |||| || | ||| || |||| ||| | || Sbjct 307 TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACAT 366 Query 729 GGGAGCACAAGTTTCTAGACAACAAACTGGCACGCATGAGAATGCTAACGTTGCCACTGG 788 ||| |||| || || | ||||| | || | || || || ||||| || || | Sbjct 367 GGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTACCGA 426 Query 789 AGGCTCAAGCATAACTTACAATCAAATAAATTTCTACAAAGATAGTTATGCAGCCTCAGC 848 || || | |||| || | | || |||| ||| |||||| ||||| ||| |||| Sbjct 427 GGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGC 486 Query 849 TAGTAAACA-AGATTTCAGCCAAGACCCATCCAAGTTCACAGAGCCTGT---AG-CTGAA 903 |||| || || || || || |||||| |||||| || | ||||| || | Sbjct 487 AGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCT 545 Query 904 GCCCTAAAAGCTGG-AGCCCCAGTCCTAAAATCACCATCAGCAGAGGCTTGTGGTTATAG 962 | || ||| ||| ||| ||| ||||||| ||||| || ||||| |||||||| || Sbjct 546 TCACTGAAA--TGGCAGCGCCA---TTAAAATCTCCATCTGCTGAGGCATGTGGTTACAG 600 Query 963 TGACAGGGTCTTACAGCTCAAATTAGGAAATTCCAGTATAGTTACCCAAGAAGCAGCTAA 1022 ||| |||| ||| | | | || ||||| | || ||| ||||||||||| || Sbjct 601 TGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAA 660 Query 1023 CAT--TTGTTGTGCCTATGGAGAGTGGCCCACCTATCTACCTGATAATGAGGCAGTGGCT 1080 ||| | || || |||||| |||||||| |||| | || ||| || || Sbjct 661 CATCATAGT--TGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCA 718 Query 1081 ATTGATAAACCTACCCAGCCAGAAACATCCACAGATAGATTTTACACTTTAAAATCCAAG 1140 | || ||||| || | ||||| || |||| |||||||| || | | || Sbjct 719 GTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAA 778 Query 1141 AAATGGGA-AAG-CAACAGTACTGGGTGGTGGTGGAAGCTCCCTGATGCTTTGAATCAAA 1198 ||||| ||| || | | ||||||| ||||| |||| |||| || | | ||| Sbjct 779 TTGTGGGAGAAGTCATC--CAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAA 836 Query 1199 TTGGTATGTTTGGTCAAAACGTCCAATACCACTACCTGTATAGGAGTGGGTTCCTGTGC- 1257 || | ||||||||||| | || | ||||||||| ||| || |||||| ||| Sbjct 837 CCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTC---TGCA 893 Query 1258 --CACGTACAATGCAATGCTACAAAATTTCACCAAGG 1292 ||||| || |||||||||| || || |||||||| Sbjct 894 TTCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 930 Score = 91.5 bits (100), Expect = 7e-15 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1996 TATTACACCCACTGGTCTGGTTCACTGGAGATGACTTTCATGTTTTGTGGGAGCTTTATG 2055 || |||||||| ||||| || |||||||| | || |||||||| ||| ||||||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2056 ACCACAGGTAAATTGATCATTTGCTACACACCACCTGGTGG-ATCTAGCCCAACAGATAG 2114 | || || || || |||| ||||||||||| || || || ||||| || | Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAA-GGACCG 1808 Query 2115 GATGCAAGCCATGCTAGCTACTCATGTGGTGTGGGACTTTGGGCTGCAATCTAGTATCAC 2174 | | |||||| | | || || || | |||||||||||||||||||| | |||| Sbjct 1809 GGCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCAC 1868 Query 2175 CATTATAATTCCTTGGATC 2193 | || |||| || |||||| Sbjct 1869 CCTTGTAATACCATGGATC 1887 >seq4083 Length=3246 Score = 149 bits (164), Expect = 3e-32 Identities = 246/351 (70%), Gaps = 18/351 (5%) Strand=Plus/Minus Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413 ||||| |||||||| | ||| |||||| || ||| || || ||||| ||||||||| | Sbjct 2959 GAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGC 2900 Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473 ||| || |||||||| ||||| | || || || || || || |||||||||||| Sbjct 2899 AAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCA 2840 Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACT-GGGTGGGGATTCT 4527 ||||| | | ||||| ||||| || |||| || ||| ||| | |||| Sbjct 2839 TTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCC 2780 Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTC-CT 4586 | | || || || ||| | | ||||| || || |||||||||| | ||| || Sbjct 2779 T------TACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGA---TCGTCACT 2729 Query 4587 G--ATGGATGACTTAATGCAAAATCCAGATGGTAATGATATTGCTATGTTTTGTCAGATG 4644 | ||||| ||| || ||||| ||||| || || || || | | |||||||||||| Sbjct 2728 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2669 Query 4645 GTATCTACTGTAGACTTTATACCACCAATGGCCAGTCTTGAGGAAAAGGGA 4695 || || || || || |||||||| || ||||| ||| ||||| |||||| Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGA 2618 Score = 140 bits (154), Expect = 2e-29 Identities = 277/408 (68%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 6864 CAAAGGTATTGATTTAGATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAG 6923 |||||| || ||| ||||| | | || ||| | || || || |||||||| | ||||| Sbjct 446 CAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAG 387 Query 6924 TTACCCACATGAGATAGAC--CCTGGCCTATTGGCAAAAGCCGGGAAAGAGTATGGATTA 6981 |||||| || ||| |||| ||||||| | | || || |||||||| || Sbjct 386 TTACCCCTTCCCAATTGACTGTCTGG--AGTTGGCAAGAACAGGCAAGGAGTATGGTCTA 329 Query 6982 ATAATGACCCCAGCAGACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACC 7041 | |||||||| || |||||| | |||| |||| ||| |||||||||| || Sbjct 328 ACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACT 269 Query 7042 TTTTTGAAGAGGTATTTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATG 7101 || |||||||| ||| | ||| | || | || ||| | |||||||| ||| Sbjct 268 TTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATG 209 Query 7102 CCAATGAAGGAAATCCATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGAT 7161 ||||||| ||| || || || || ||| | ||||| |||||| | ||| || |||||| Sbjct 208 CCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGAT 149 Query 7162 CATGTGAGATCCTTGTGCCTACTKGCCTGGCACAATGGTGAAGAAACTTACAATGAATTC 7221 || ||| | ||| | ||| || | || |||||||| || |||| || | |||| Sbjct 148 CACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGAAAAATTT 89 Query 7222 TGCAGGAAAATCAGAACTGTACCTGTAGGAAGAGCTTTAGCTTTACCA 7269 || ||||||| | || || | |||| ||| || ||| ||||| Sbjct 88 GTGAGTGCAATCAGATCAGTTCCAATTGGAAAAGCATTGGCTATACCA 41 Score = 116 bits (128), Expect = 2e-22 Identities = 599/937 (64%), Gaps = 40/937 (4%) Strand=Plus/Minus Query 5752 TATGGTTTCCTTAATCTTGGGGGGACCCCCACCCACAGAATATTAATGTATAACTTCCCC 5811 ||||| || | || ||| | || | ||||| ||||| | | ||||| || ||||| Sbjct 1573 TATGGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCA 1514 Query 5812 ACAAGAGCAGGACAATGTGGAGGGGTGGTGACCACCACTGGTAAAGTGATTGGCATTCAC 5871 |||| ||||||||| ||||| || || ||||| || |||||||||||||| || ||| Sbjct 1513 ACAAAAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCAC 1454 Query 5872 GTTGGTGGCAATGGTGCGCAAGGCTTT---GCTGCCATGCTATTGCAAAATTACTTTACT 5928 |||||||||| ||| |||||| || |||||| || | | | | ||| | Sbjct 1453 ATTGGTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACT--TTTGCA 1396 Query 5929 GAGAAGCAGGGTGAGATAGTATCCATTGAGA---------AAACTGGAGTCTTTA---TA 5976 | ||| || |||||||| || || || ||||||| || | | Sbjct 1395 GTGAA-CAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACATC 1337 Query 5977 AATGCGCCAGCTAAAACCAAATTAGAACCTAGTGTCTTCCATGAAGTATTTGAGGGAGTT 6036 || | || || || || | ||||| |||||||| || || || || || || | Sbjct 1336 AACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACT 1277 Query 6037 AAGGAACCTGCAGTTTTACATAGCAAGGACAAGAGACTGAAGGTAGATTTTGAGGAAGCA 6096 || || || ||||| | ||| || ||| || ||| | || || ||||| | || Sbjct 1276 AAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCT 1217 Query 6097 ATATTTTCCAAATACGTTGGTAACAAAAC-CATGCTAATGGATGAGTACATGGAGGAGGC 6155 | ||||| |||||||| || |||| |||| | || |||| | ||||||| Sbjct 1216 CTTTTTTCAAAATACGTGGGGAACACGCTTCATGA-ACCCGACGAGTTTGTCAAGGAGGC 1158 Query 6156 AGTGGACCACTATGTAGGTTGTTTAGAGCCCCTTGATATTAGCACCGAACCCA--TTAAA 6213 | || |||| | ||| | ||||| | ||| ||| | | | Sbjct 1157 GGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACC--ACCAAGATGAGC 1100 Query 6214 TTAGAAGAAGCCATGT-ATGGTATGGATGGCCTTGAAGCCTTGGACCT-CACTACCAGTG 6271 | || || || |||| | || | || ||| ||||| | || || ||| || |||| Sbjct 1099 ATGGAGGATGC-ATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAGTG 1042 Query 6272 CTGGCTACCCATACTTGTTGCAG--GGGAAGAAGAAAAGAGACATCTTCAACAGACAAAC 6329 | || || |||||| |||| || | ||||||| ||||| || | | ||| Sbjct 1041 CAGGATATCCATACAG--TGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 984 Query 6330 TAGAGATA-CAACAGAGATGACCAAAATGT---TGGACAAATATGGTGTGGATTTGCCCT 6385 | | ||| || || |||||| || | | ||||||| ||||| ||||| | || | Sbjct 983 TCGCGATGTCAGCA-AGATGA---AATTCTACATGGACAAGTATGGGTTGGATCTACCGT 928 Query 6386 TTGTCACATTTGTCAAAGATGAACTCAGAAGCAGAGAGAAAGTAGAGAAGGGCAAGTCTA 6445 || | ||| ||||||||||| || || || || | |||| || |||||| Sbjct 927 ACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTC 868 Query 6446 GATTGATTGAAGCTAGTTCTTTAAATGATTCAGTTGCCATGCGAGTGGCATTTGGAAACC 6505 | | || ||||| || ||||||| ||||| | || || || ||||||| ||| Sbjct 867 GTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACC 808 Query 6506 TTTATGCAACATTCCACAAAAATCCAGGAGTCGCCACTGGGAGCGCTGTTGGATGTGATC 6565 |||||| | | |||||| |||||||| ||| || |||||||| || | | Sbjct 807 TTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACC 748 Query 6566 CAGATTTGTTTTGGTCCAAAATCCCAGTTATSTTAGATGGAAAAATTTTTGCATTTGACT 6625 ||||| |||| ||| ||| | ||| || | | ||| |||| || ||||||| Sbjct 747 CAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACT 688 Query 6626 ACACAGGTTATGATGCCAGTCTCTCACCAGTCTGGTT 6662 || | || ||||| || |||||| ||||| ||||| Sbjct 687 ACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTT 651 >seq1 Length=805 Score = 136 bits (150), Expect = 2e-28 Identities = 225/324 (69%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 6880 GATCAGTTCAAAATGATAGCATATGGTGATGATGTAATTGCTAGTTACCCACATGAGATA 6939 ||| |||| || ||| | || ||||| || ||||| | ||||||||||| | || Sbjct 373 GATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATT 432 Query 6940 GACCCTGGCCTA---TTGGCAAAAGCCGGGAAAGAGTATGGATTAATAATGACCCCAGCA 6996 || | |||| ||||| || | || ||||||||||| || | ||||| || ||| Sbjct 433 GA---TTGCCTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCA 489 Query 6997 GACAAGAGTAGTGGTTTTACTGAGACTACTTGGGAGAATGTTACCTTTTTGAAGAGGTAT 7056 ||||| |||| | ||| || ||||| |||| |||||| ||||||| Sbjct 490 GACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGA 549 Query 7057 TTCAGAGCAGATGAACAGTATCCCTTTTTGATCCACCCAGTTATGCCAATGAAGGAAATC 7116 ||| |||| | || | ||| || || || ||||| ||||| |||| || ||| Sbjct 550 TTCTTGCCAGACCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATC 609 Query 7117 CATGAGTCAATTAGATGGACAAAAGATCCGAGAAACACACAAGATCATGTGAGATCCTTG 7176 ||||| || ||| ||||||| ||||| || | ||||| |||||||| ||| | ||| || Sbjct 610 CATGAATCCATTCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTG 669 Query 7177 TGCCTACTKGCCTGGCACAATGGT 7200 || || | || |||||||||||| Sbjct 670 TGTCTGTTGGCATGGCACAATGGT 693 >seq4303 Length=1160 Score = 91.5 bits (100), Expect = 7e-15 Identities = 172/251 (69%), Gaps = 18/251 (7%) Strand=Plus/Plus Query 4354 GAAGCTAAGAGGGTTTCTGCCTTAGAAAGGAAAATTAACAACTACATACAGTTCAAGTCC 4413 ||||||||| | || | || |||| | || ||| ||||||||||| ||||||||| | Sbjct 913 GAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGC 972 Query 4414 AAATCTCGCATTGAACCAGTATGTTTGATAATACATGGATCTCCAGGCACTGGGAAGTCA 4473 ||| || |||||||| |||||| | || || || || ||||||||||| ||||| Sbjct 973 AAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCC 1032 Query 4474 GTGGCATCTAACCTCATTGCCAGAGCTATTACAGAAAA-----ACT-GGGTGGGGATTCT 4527 | || | ||||||| | | || |||| || ||| ||| | Sbjct 1033 CTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTG------ 1086 Query 4528 TACTCACTCCCACCTGATCCAAAATATTTTGATGGGTATAAACAACAGACAGTGGTC--- 4584 |||||||| ||||| || || | ||||||| ||||||||||| || ||||||| Sbjct 1087 TACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCA---AGTGGTCACA 1143 Query 4585 CTGATGGATGA 4595 | |||||||| Sbjct 1144 GTTATGGATGA 1154 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23531623742408