Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_001472.1
Length=7389
Score E
Sequences producing significant alignments: (Bits) Value
seq4094 434 5e-118
seq4083 275 3e-70
seq1 210 1e-50
>seq4094
Length=3074
Score = 434 bits (480), Expect = 5e-118
Identities = 666/936 (71%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 382 GGGGAAACCCGTAGGACGCTCTAATACAGACATGGTGCGAAGAGTCTATTGAGCTAGTTG 441
|||| ||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 3 GGGGTAACCCATAGGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTA 62
Query 442 GTAATCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATACCCTCAAACCA 501
|| |||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 63 GTGGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCA 122
Query 502 GGGGGCAGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTG 561
| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAGGGTAGTGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTG 182
Query 562 TTTCATTTTATTCCTATACTGGCTGCTTATGGTGACAATTGACAGGTTGTTACCATATAG 621
|||| |||||||| |||| |||||||||||||||||||| | |||||||||||||||
Sbjct 183 TTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAG 242
Query 622 TTATTGGATTGGCCATCCGGTGACTAACAGAGCAATTATATATCTCTTTGTTGGGTTTAT 681
||||||||||||||||||||| ||||| |||||| | || || ||| |||| ||| |
Sbjct 243 CTATTGGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGT 302
Query 682 ACCACTTAGC-TTGAAAGAGGTTAAAACACTACATCTCATCATTAAACTAAATACAA-CA 739
|||| ||| | |||| || | || || | |||| | | || || |||| ||
Sbjct 303 ACCA-TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCA 361
Query 740 AA-ATGGGGGCTCAAGTATCAACACAAAAGACTGGAGCACATGAGACCGGGCTGAAT--G 796
|| ||||| | || || || |||||| | || |||| || | | || | | |
Sbjct 362 AACATGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAAC--TCTAACTCAG 419
Query 797 CAAGCGGGAATTCCATCATCCATTACACAAACATAAACTACTATAAAGATGC---TGCAT 853
| | || | ||||| || | || || | ||| || |||||||||||| | |||
Sbjct 420 CTACCGAGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCG 479
Query 854 CCAACTCAGCCAA-CAGACAGGATTTCACTCAAGACCCAGGTAAATTTACTGAGCCAGTG 912
||| ||| || ||| || || | || ||||||| || ||| | | || ||
Sbjct 480 CCACAGCAGGTAAGCAG--AGCCTT--AAGCAGGACCCAGACAAGTTTGCAAATCCTGTC 535
Query 913 AAGGACATTATGA-TCAAATCGATGCCAGCATTGAACTCCCCCTCTGCCGAAGAGTGTGG 971
|| ||||| | | | |||| | | | |||| || || || ||||| || | |||||
Sbjct 536 AAAGACATCTTCACTGAAATGGCAG-CGCCATTAAAATCTCCATCTGCTGAGGCATGTGG 594
Query 972 TTATAGTGACAGGGTTCGATCAATAACCCTCGGGAACTCCACTATCACAACACAGGAGTG 1031
||| ||||| |||| | | |||| | || || || || ||||| || || ||
Sbjct 595 TTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGC 654
Query 1032 TGCTAATGTTGTGGTTGGGTATGGTGTGTGGCCAGAATATTTGAAGGACAATGAAGCCAC 1091
|| || | | ||||| ||||||| |||||| || | |||| ||| |||||
Sbjct 655 AGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCAC 714
Query 1092 AGGCGAGGACCAACCAACACAACCCGACGTGGCCACATGTCGGTTCTACACTTTAGAGTC 1151
| | |||| ||||||| | || || || | | |||| ||||| || || |
Sbjct 715 TGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACAC 774
Query 1152 CGTGCAGTGGATGAAGAATTCAGCAGGTTGGTGGTGGAAGTTACCAGATGCACTTTCACA 1211
|||| |||| || || |||| ||||| || || |||| | | |
Sbjct 775 AAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGA 834
Query 1212 AATGGGGTTGTTTGGACAAAATATGCAGTACCACTACTTAGGGAGAACAGGCTACACCAT 1271
|| ||| | ||||| |||||| |||| ||||||| | | |||| | | |||
Sbjct 835 AACCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCAT 894
Query 1272 CCACGTGCAGTGCAACGCATCTAAGTTTCATCAGGG 1307
|||||||||||||| || |||||| || || ||
Sbjct 895 TCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 930
>seq4083
Length=3246
Score = 275 bits (304), Expect = 3e-70
Identities = 463/667 (69%), Gaps = 6/667 (1%)
Strand=Plus/Minus
Query 4041 TTGGCTCAAGAAGTTCACTGAAATGACCAACGCCTGCAAGGGAATGGAGTGGATAGCTAT 4100
|||| | |||||||||| || | | | ||| ||||| | |||||||| | |
Sbjct 3239 TTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAA 3180
Query 4101 TAAAATCCAGAAATTTATAGAATGGCTCAAAGTTAAAATCCTACCAGAAGTTAAAGAAAA 4160
|||||| |||||||| || |||||||| | |||||| |||| | | |||||| ||
Sbjct 3179 CAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAA 3120
Query 4161 ACATGAGTTCTTAAACAGACTTAAACAACTTCCGTTACTGGAGAGTCAGATTGCCACCAT 4220
| ||||| |||||| || || ||||| || ||| |||||| || ||| | | |
Sbjct 3119 AGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTCTAATCT 3060
Query 4221 TGAGCAAAGTGCACCTTCTCAGAGTGATCAAGAGCAATTGTTTTCTAATGTTCAGTACTT 4280
|| || ||| |||| ||| || | ||| ||||| || || ||| |
Sbjct 3059 CGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTACCT 3000
Query 4281 TGCACATTACTGCAGGAAATACGCACCCCTGTATGCGGCCGAAGCAAAAAGGGTGTTCTC 4340
|| || | |||| | |||| | |||||| ||||| | |||||||| ||||||| | |
Sbjct 2999 GGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGC 2940
Query 4341 CCTTGAGAAGAAAATGAGTAACTACATACAGTTCAAGTCCAAATGCCGTATTGAACCTGT 4400
||| || |||| ||||| ||| ||||| ||||||||| |||| |||||||||||||||
Sbjct 2939 CCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGT 2880
Query 4401 ATGCTTGCTCTTGCACGGGAGTCCTGGTGCAGGGAAGTCAGTTGCCACTAACCTGATTGG 4460
|||| | | | || |||||| | ||||||||| | || || | ||||
Sbjct 2879 ATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGC 2820
Query 4461 GCGCTCACTCGCGGAGAAGCTTAATAGCTC---TGTGTACTCTCTACCACCAGACCCAGA 4517
| | | || || ||| || | ||| |||||| || |||| |||||||||||
Sbjct 2819 TAGAGCCATAGCAGACAAG--TACCA-CTCCAGTGTGTATTCCTTACCTCCAGACCCAGA 2763
Query 4518 CCATTTTGACGGTTACAAACAACAGGCCGTTGTGATCATGGATGATTTATGCCAGAACCC 4577
||| |||||||| |||||||||||| ||| | ||||| || ||||||| |||||
Sbjct 2762 CCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACCC 2703
Query 4578 AGATGGTAAGGATGTTTCTTTGTTTTGTCAAATGGTCTCCAGTGTGGACTTTGTACCGCC 4637
||| || || || | || | |||||||| |||||||||| ||||| ||| |||||||
Sbjct 2702 AGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCC 2643
Query 4638 AATGGCAGCGCTAGAAGAGAAAGGCATTTTGTTCACCTCTCCCTTTGTCCTGGCTTCAAC 4697
|||||| | || || ||||| || | | |||||||| ||||| | || || ||
Sbjct 2642 TATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCAC 2583
Query 4698 CAACGCC 4704
||||||
Sbjct 2582 TAACGCC 2576
Score = 219 bits (242), Expect = 2e-53
Identities = 990/1537 (64%), Gaps = 58/1537 (4%)
Strand=Plus/Minus
Query 5686 ATGTATATCCCAGTGGGACAAGTTACAGAGTATGGCTTCCTGAATCTGGGTGGTACACCC 5745
|||| | | ||||| ||| | || ||||||| || |||| || |||||| |||
Sbjct 1603 ATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCC 1544
Query 5746 ACCAAGAGAATGCTTATGTACAACTTCCCCACGAGGGCAGGTCAGTGTGGCGGAGTGCTC 5805
|| | || | | |||||||| ||||| || | ||||| |||||||| || || |
Sbjct 1543 ACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTG 1484
Query 5806 ATGTCCACTGGCAAAGTTTTGGGGATCCATGTTGGCGGGAATGGTCATCAAGGCTTCTCA 5865
| || || ||||| | |||||||| |||| || || ||| ||||| ||||
Sbjct 1483 ACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGC 1424
Query 5866 GCGGCACTTCTTAAACACTACTTCAATGATGAACAAGGAGAAATCGAGTTCATTGAAAGC 5925
|| || || | ||||| ||||||||| || ||| | | || ||||
Sbjct 1423 GCTGCCCTGAAGAGGGGATACTTTTGCAGTGAACAAGGTGAGATCCAATGGATG--AAGC 1366
Query 5926 TCAA--AGGAAGCAGG--GTTCCCAGTCATCAACACGCCTAGCAAAACTAAATTGGAGCC 5981
||| | ||| | || | | | ||||||| |||| || || | || ||
Sbjct 1365 CCAACAAAGAAACTGGCAGGTTGAA--CATCAACGGACCTACTCGCACAAAGCTTGAACC 1308
Query 5982 AAGTGTCTTCCACCAGGTTTTTGAAGGCAATAAAGAGCCAGCAGTCCTCAGGAATGGCGA 6041
||||||||| ||| | || || ||||||| ||||||||||||||| || | | | ||
Sbjct 1307 AAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGA 1248
Query 6042 TCCACGCCTCAGAGCCAACTTTGAGGAGGCCATATTTTCCAAATACATCGGAAATG---T 6098
||| | || || ||||||| |||| | ||||| |||||| | || || |
Sbjct 1247 CCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCT 1188
Query 6099 TAACACACACGTGGATGAATACATGCTGGAAGCTGTTGACCATTATGCTGGTCAATTGGC 6158
| | || || | || | | ||| || | |||||||| ||| | |
Sbjct 1187 TCATGAACCCG---ACGAGTTTGTCAAGGAGGCGGCCTTACATTATGCCAACCAACT--C 1133
Query 6159 AACC--TTAGACATCAGCACCGAGCCA-ATGAGATTGGAAGATGC-TGTATATGGTACTG 6214
|| | ||||| |||| ||| | | | ||||| |||| ||||| ||| || || || |
Sbjct 1132 AAGCAGTTAGATATCAAGACC-ACCAAGATGAGCATGGAGGATGCATGT-TACGGCACAG 1075
Query 6215 AAGGCCTTGAGGCTCTTGAT-TTAACAACGAGTGCGGGCTACCCGTATGTCGCTCTGGGC 6273
| ||| || ||| | ||| || ||| | ||||| || || || || || || |||
Sbjct 1074 AGAACCTGGAAGCTATAGATCTTCACA-CAAGTGCAGGATATCCATACAGTGCACTAGGC 1016
Query 6274 ATTAAAAAGAGGGACATCCTC--TCAAAGAAGACCAGAGACCTGACCAAGCTGAAGGAGT 6331
|| || || | |||||| | || || || | | || | | |||| |||| |
Sbjct 1015 ATCAAGAAAAAGGACATTTTGGATCCAACAACTC--GCGATGTCAGCAAGATGAAATTCT 958
Query 6332 GCATGGACAAGTATGGCCTAAACCTACCAATGGTA----ACCTATGTGAAAGATGAACTC 6387
||||||||||||||| | | ||||| ||| || ||||| |||||||||||
Sbjct 957 ACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATGAACTT 902
Query 6388 AGATCTGCAGAGAAGGTGGCGAAAGGGAAATCTAGGCTAATTGAGGCATCCAGTTTGAAT 6447
|| | || ||| | ||||||||| ||| | || || || || ||| | |||
Sbjct 901 AGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAAT 842
Query 6448 GACTCCGTGGCAATGAGACAAACATTTGGCAACCTATACAAAACTTTTCACCTAAACCCA 6507
||||| ||| ||||| |||||||| |||| || || |||| ||| || |||
Sbjct 841 GACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCA 782
Query 6508 GGGATTGTAACTGGCAGTGCCGTCGGGTGTGATCCAGATCTCTTTTGGAGCAAGATACCA 6567
|| | | || || || || ||||| | |||||| | || ||||||||| |||||
Sbjct 781 GGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCA 722
Query 6568 GTGATGTT----GGATGGCCATCTCGTAGCTTTTGATTATTCTGGATATGACGCTAGCTT 6623
| | | |||| | || | || ||||| || || || ||||||||||| |
Sbjct 721 ATTCTACTCCCAGGATCG----CTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCT 666
Query 6624 GAGTCCCGTATGGTT---TGC-CTGTCTAAAGCTACTGCTTGAGAAACTTGGTTACT-CG 6678
|| || || ||||| || ||| | || | |||| | |||| |||| |||| ||
Sbjct 665 CAGCCCAGTGTGGTTCAGGGCGCTGGAGATAG-TCCTGC--GGGAAA-TTGGATACTCCG 610
Query 6679 CACAAGGAGACCAATTACATTGACTACCTGTGCAACTCCCATCACCTGTACAGGGATAAA 6738
| | | || | ||| || | || ||||||| ||||| | |||||
Sbjct 609 AAGACGCAG-TGTCTCTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAA 551
Query 6739 CATTACTTTGTGCGGGGTGGCATGCCATCAGGATGCTCTGGCACAAGCATCTTCAACTCA 6798
||| | ||| | || || ||||| ||||| ||||| ||||| ||| ||||||||
Sbjct 550 ACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCG 491
Query 6799 ATGATAAATAACATCATAATCAGGACACTAATGTTGAAGGTGTACAAAGGGATCGACTTG 6858
||||| || || ||||| || || ||||| || | || | ||||||||| || |
Sbjct 490 ATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTA 431
Query 6859 GATCAATTCAGAATGATTGCTTATGGTGATGACGTGATCGCATCATATCCGTGGCCCATA 6918
||| || | | ||| | || || || ||||| ||| | || || || | || ||
Sbjct 430 GATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATT 371
Query 6919 GA-TGCGTCCCTGCTTGCTGAAGCTGGTAGGGATTGTGGGTTGATCATGACACCAGCAGA 6977
|| || | | | || | | || | ||| | ||| | | ||||| || || ||
Sbjct 370 GACTGTCT-GGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGA 312
Query 6978 CAAAGGGGATTGCTTCAATGAAGTCACCTGGGCTAATGTCACATTTCTAAAGAG-GTATT 7036
||| ||||| ||||| || || |||| |||| ||| || | ||||| | |||
Sbjct 311 CAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATT 252
Query 7037 TTAGAGCAGATGAACAGTACCCCTTTTTAGTGCACCCCGTCATGCCTATGAAAGACATAC 7096
| | | ||| | || | ||| ||| | | ||||| ||||| |||| || || |
Sbjct 251 CTTG-CCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTC 193
Query 7097 ATGAATCAATCAGATGGACCAAGGACCCAAAGAACACCCAAGATCATGTGCGCTCGTTGT 7156
| ||||| || | |||||||| || || | || |||||||| |||||||| | |
Sbjct 192 ACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCT 133
Query 7157 GCTTATTGGCCTGGCACAACGGGGAGCACGAATATGA 7193
||||||| || |||||||||||| | | || |||||
Sbjct 132 GCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGA 96
>seq1
Length=805
Score = 210 bits (232), Expect = 1e-50
Identities = 349/499 (70%), Gaps = 9/499 (2%)
Strand=Plus/Plus
Query 6736 AAACATTACTTTGTGCGGGGTGGCATGCCATCAGGATGCTCTGGCACAAGCATCTTCAAC 6795
|||||| ||| ||| | ||||| ||||| |||||||| ||||| || |||||| ||
Sbjct 251 AAACAT-ACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAAT 309
Query 6796 TCAATGATAAATAACATCATAATCAGGACACTAATGTTGAAGGTGTACAAAGGGATCGAC 6855
|||||||| || |||||||| ||||| || || || | || | || || || |||
Sbjct 310 TCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGAC 369
Query 6856 TTGGATCAATTCAGAATGATTGCTTATGGTGATGACGTGATCGCATCATATCCGTGGCCC 6915
||||| | || | ||| | || ||||| || || ||| | || || || | |||
Sbjct 370 CTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCC 429
Query 6916 ATAGATGCGTCCCT---GCTTGCTGAAGCTGGTAGGGATTGTGGGTTGATCATGACACCA 6972
|| ||| | ||| | | ||| | |||| | || | ||| |||| |||||| ||
Sbjct 430 ATTGAT---TGCCTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCT 486
Query 6973 GCAGACAAAGGGGATTGCTTCAATGAAGTCACCTGGGCTAATGTCACATTTCTAAAGAG- 7031
||||||||| || ||||||||||| || |||| |||| || || || |||||
Sbjct 487 GCAGACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGA 546
Query 7032 GTATTTTAGAGCAGATGAACAGTACCCCTTTTTAGTGCACCCCGTCATGCCTATGAAAGA 7091
| ||| | | |||| | || | || || ||| | ||||| ||||| |||| |||
Sbjct 547 GGATTCTTGC-CAGACCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGA 605
Query 7092 CATACATGAATCAATCAGATGGACCAAGGACCCAAAGAACACCCAAGATCATGTGCGCTC 7151
|| |||||||| || ||||||| || ||| | |||||||||||||| ||||||||
Sbjct 606 GATCCATGAATCCATTCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTC 665
Query 7152 GTTGTGCTTATTGGCCTGGCACAACGGGGAGCACGAATATGAGGAGTTCATCCGCAAAAT 7211
|||| | ||||| |||||||| || || | ||||||||| |||| | | |||
Sbjct 666 CCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAAT 725
Query 7212 TAGAAGCGTCCCAGTTGGA 7230
|||| || |||||||||
Sbjct 726 TAGATCAGTTCCAGTTGGA 744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23528423902356
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