Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_001472.1 Length=7389 Score E Sequences producing significant alignments: (Bits) Value seq4094 434 5e-118 seq4083 275 3e-70 seq1 210 1e-50 >seq4094 Length=3074 Score = 434 bits (480), Expect = 5e-118 Identities = 666/936 (71%), Gaps = 18/936 (2%) Strand=Plus/Plus Query 382 GGGGAAACCCGTAGGACGCTCTAATACAGACATGGTGCGAAGAGTCTATTGAGCTAGTTG 441 |||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 3 GGGGTAACCCATAGGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTA 62 Query 442 GTAATCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATACCCTCAAACCA 501 || |||||||||||||||||||||||||||||||||||||||||||| || |||| ||| Sbjct 63 GTGGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCA 122 Query 502 GGGGGCAGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTG 561 | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGGGTAGTGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTG 182 Query 562 TTTCATTTTATTCCTATACTGGCTGCTTATGGTGACAATTGACAGGTTGTTACCATATAG 621 |||| |||||||| |||| |||||||||||||||||||| | ||||||||||||||| Sbjct 183 TTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAG 242 Query 622 TTATTGGATTGGCCATCCGGTGACTAACAGAGCAATTATATATCTCTTTGTTGGGTTTAT 681 ||||||||||||||||||||| ||||| |||||| | || || ||| |||| ||| | Sbjct 243 CTATTGGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGT 302 Query 682 ACCACTTAGC-TTGAAAGAGGTTAAAACACTACATCTCATCATTAAACTAAATACAA-CA 739 |||| ||| | |||| || | || || | |||| | | || || |||| || Sbjct 303 ACCA-TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCA 361 Query 740 AA-ATGGGGGCTCAAGTATCAACACAAAAGACTGGAGCACATGAGACCGGGCTGAAT--G 796 || ||||| | || || || |||||| | || |||| || | | || | | | Sbjct 362 AACATGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAAC--TCTAACTCAG 419 Query 797 CAAGCGGGAATTCCATCATCCATTACACAAACATAAACTACTATAAAGATGC---TGCAT 853 | | || | ||||| || | || || | ||| || |||||||||||| | ||| Sbjct 420 CTACCGAGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCG 479 Query 854 CCAACTCAGCCAA-CAGACAGGATTTCACTCAAGACCCAGGTAAATTTACTGAGCCAGTG 912 ||| ||| || ||| || || | || ||||||| || ||| | | || || Sbjct 480 CCACAGCAGGTAAGCAG--AGCCTT--AAGCAGGACCCAGACAAGTTTGCAAATCCTGTC 535 Query 913 AAGGACATTATGA-TCAAATCGATGCCAGCATTGAACTCCCCCTCTGCCGAAGAGTGTGG 971 || ||||| | | | |||| | | | |||| || || || ||||| || | ||||| Sbjct 536 AAAGACATCTTCACTGAAATGGCAG-CGCCATTAAAATCTCCATCTGCTGAGGCATGTGG 594 Query 972 TTATAGTGACAGGGTTCGATCAATAACCCTCGGGAACTCCACTATCACAACACAGGAGTG 1031 ||| ||||| |||| | | |||| | || || || || ||||| || || || Sbjct 595 TTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGC 654 Query 1032 TGCTAATGTTGTGGTTGGGTATGGTGTGTGGCCAGAATATTTGAAGGACAATGAAGCCAC 1091 || || | | ||||| ||||||| |||||| || | |||| ||| ||||| Sbjct 655 AGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCAC 714 Query 1092 AGGCGAGGACCAACCAACACAACCCGACGTGGCCACATGTCGGTTCTACACTTTAGAGTC 1151 | | |||| ||||||| | || || || | | |||| ||||| || || | Sbjct 715 TGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACAC 774 Query 1152 CGTGCAGTGGATGAAGAATTCAGCAGGTTGGTGGTGGAAGTTACCAGATGCACTTTCACA 1211 |||| |||| || || |||| ||||| || || |||| | | | Sbjct 775 AAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGA 834 Query 1212 AATGGGGTTGTTTGGACAAAATATGCAGTACCACTACTTAGGGAGAACAGGCTACACCAT 1271 || ||| | ||||| |||||| |||| ||||||| | | |||| | | ||| Sbjct 835 AACCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCAT 894 Query 1272 CCACGTGCAGTGCAACGCATCTAAGTTTCATCAGGG 1307 |||||||||||||| || |||||| || || || Sbjct 895 TCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 930 >seq4083 Length=3246 Score = 275 bits (304), Expect = 3e-70 Identities = 463/667 (69%), Gaps = 6/667 (1%) Strand=Plus/Minus Query 4041 TTGGCTCAAGAAGTTCACTGAAATGACCAACGCCTGCAAGGGAATGGAGTGGATAGCTAT 4100 |||| | |||||||||| || | | | ||| ||||| | |||||||| | | Sbjct 3239 TTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAA 3180 Query 4101 TAAAATCCAGAAATTTATAGAATGGCTCAAAGTTAAAATCCTACCAGAAGTTAAAGAAAA 4160 |||||| |||||||| || |||||||| | |||||| |||| | | |||||| || Sbjct 3179 CAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAA 3120 Query 4161 ACATGAGTTCTTAAACAGACTTAAACAACTTCCGTTACTGGAGAGTCAGATTGCCACCAT 4220 | ||||| |||||| || || ||||| || ||| |||||| || ||| | | | Sbjct 3119 AGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTCTAATCT 3060 Query 4221 TGAGCAAAGTGCACCTTCTCAGAGTGATCAAGAGCAATTGTTTTCTAATGTTCAGTACTT 4280 || || ||| |||| ||| || | ||| ||||| || || ||| | Sbjct 3059 CGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTACCT 3000 Query 4281 TGCACATTACTGCAGGAAATACGCACCCCTGTATGCGGCCGAAGCAAAAAGGGTGTTCTC 4340 || || | |||| | |||| | |||||| ||||| | |||||||| ||||||| | | Sbjct 2999 GGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGC 2940 Query 4341 CCTTGAGAAGAAAATGAGTAACTACATACAGTTCAAGTCCAAATGCCGTATTGAACCTGT 4400 ||| || |||| ||||| ||| ||||| ||||||||| |||| ||||||||||||||| Sbjct 2939 CCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGT 2880 Query 4401 ATGCTTGCTCTTGCACGGGAGTCCTGGTGCAGGGAAGTCAGTTGCCACTAACCTGATTGG 4460 |||| | | | || |||||| | ||||||||| | || || | |||| Sbjct 2879 ATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGC 2820 Query 4461 GCGCTCACTCGCGGAGAAGCTTAATAGCTC---TGTGTACTCTCTACCACCAGACCCAGA 4517 | | | || || ||| || | ||| |||||| || |||| ||||||||||| Sbjct 2819 TAGAGCCATAGCAGACAAG--TACCA-CTCCAGTGTGTATTCCTTACCTCCAGACCCAGA 2763 Query 4518 CCATTTTGACGGTTACAAACAACAGGCCGTTGTGATCATGGATGATTTATGCCAGAACCC 4577 ||| |||||||| |||||||||||| ||| | ||||| || ||||||| ||||| Sbjct 2762 CCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACCC 2703 Query 4578 AGATGGTAAGGATGTTTCTTTGTTTTGTCAAATGGTCTCCAGTGTGGACTTTGTACCGCC 4637 ||| || || || | || | |||||||| |||||||||| ||||| ||| ||||||| Sbjct 2702 AGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCC 2643 Query 4638 AATGGCAGCGCTAGAAGAGAAAGGCATTTTGTTCACCTCTCCCTTTGTCCTGGCTTCAAC 4697 |||||| | || || ||||| || | | |||||||| ||||| | || || || Sbjct 2642 TATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCAC 2583 Query 4698 CAACGCC 4704 |||||| Sbjct 2582 TAACGCC 2576 Score = 219 bits (242), Expect = 2e-53 Identities = 990/1537 (64%), Gaps = 58/1537 (4%) Strand=Plus/Minus Query 5686 ATGTATATCCCAGTGGGACAAGTTACAGAGTATGGCTTCCTGAATCTGGGTGGTACACCC 5745 |||| | | ||||| ||| | || ||||||| || |||| || |||||| ||| Sbjct 1603 ATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCC 1544 Query 5746 ACCAAGAGAATGCTTATGTACAACTTCCCCACGAGGGCAGGTCAGTGTGGCGGAGTGCTC 5805 || | || | | |||||||| ||||| || | ||||| |||||||| || || | Sbjct 1543 ACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTG 1484 Query 5806 ATGTCCACTGGCAAAGTTTTGGGGATCCATGTTGGCGGGAATGGTCATCAAGGCTTCTCA 5865 | || || ||||| | |||||||| |||| || || ||| ||||| |||| Sbjct 1483 ACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGC 1424 Query 5866 GCGGCACTTCTTAAACACTACTTCAATGATGAACAAGGAGAAATCGAGTTCATTGAAAGC 5925 || || || | ||||| ||||||||| || ||| | | || |||| Sbjct 1423 GCTGCCCTGAAGAGGGGATACTTTTGCAGTGAACAAGGTGAGATCCAATGGATG--AAGC 1366 Query 5926 TCAA--AGGAAGCAGG--GTTCCCAGTCATCAACACGCCTAGCAAAACTAAATTGGAGCC 5981 ||| | ||| | || | | | ||||||| |||| || || | || || Sbjct 1365 CCAACAAAGAAACTGGCAGGTTGAA--CATCAACGGACCTACTCGCACAAAGCTTGAACC 1308 Query 5982 AAGTGTCTTCCACCAGGTTTTTGAAGGCAATAAAGAGCCAGCAGTCCTCAGGAATGGCGA 6041 ||||||||| ||| | || || ||||||| ||||||||||||||| || | | | || Sbjct 1307 AAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGA 1248 Query 6042 TCCACGCCTCAGAGCCAACTTTGAGGAGGCCATATTTTCCAAATACATCGGAAATG---T 6098 ||| | || || ||||||| |||| | ||||| |||||| | || || | Sbjct 1247 CCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCT 1188 Query 6099 TAACACACACGTGGATGAATACATGCTGGAAGCTGTTGACCATTATGCTGGTCAATTGGC 6158 | | || || | || | | ||| || | |||||||| ||| | | Sbjct 1187 TCATGAACCCG---ACGAGTTTGTCAAGGAGGCGGCCTTACATTATGCCAACCAACT--C 1133 Query 6159 AACC--TTAGACATCAGCACCGAGCCA-ATGAGATTGGAAGATGC-TGTATATGGTACTG 6214 || | ||||| |||| ||| | | | ||||| |||| ||||| ||| || || || | Sbjct 1132 AAGCAGTTAGATATCAAGACC-ACCAAGATGAGCATGGAGGATGCATGT-TACGGCACAG 1075 Query 6215 AAGGCCTTGAGGCTCTTGAT-TTAACAACGAGTGCGGGCTACCCGTATGTCGCTCTGGGC 6273 | ||| || ||| | ||| || ||| | ||||| || || || || || || ||| Sbjct 1074 AGAACCTGGAAGCTATAGATCTTCACA-CAAGTGCAGGATATCCATACAGTGCACTAGGC 1016 Query 6274 ATTAAAAAGAGGGACATCCTC--TCAAAGAAGACCAGAGACCTGACCAAGCTGAAGGAGT 6331 || || || | |||||| | || || || | | || | | |||| |||| | Sbjct 1015 ATCAAGAAAAAGGACATTTTGGATCCAACAACTC--GCGATGTCAGCAAGATGAAATTCT 958 Query 6332 GCATGGACAAGTATGGCCTAAACCTACCAATGGTA----ACCTATGTGAAAGATGAACTC 6387 ||||||||||||||| | | ||||| ||| || ||||| ||||||||||| Sbjct 957 ACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATGAACTT 902 Query 6388 AGATCTGCAGAGAAGGTGGCGAAAGGGAAATCTAGGCTAATTGAGGCATCCAGTTTGAAT 6447 || | || ||| | ||||||||| ||| | || || || || ||| | ||| Sbjct 901 AGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAAT 842 Query 6448 GACTCCGTGGCAATGAGACAAACATTTGGCAACCTATACAAAACTTTTCACCTAAACCCA 6507 ||||| ||| ||||| |||||||| |||| || || |||| ||| || ||| Sbjct 841 GACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCA 782 Query 6508 GGGATTGTAACTGGCAGTGCCGTCGGGTGTGATCCAGATCTCTTTTGGAGCAAGATACCA 6567 || | | || || || || ||||| | |||||| | || ||||||||| ||||| Sbjct 781 GGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCA 722 Query 6568 GTGATGTT----GGATGGCCATCTCGTAGCTTTTGATTATTCTGGATATGACGCTAGCTT 6623 | | | |||| | || | || ||||| || || || ||||||||||| | Sbjct 721 ATTCTACTCCCAGGATCG----CTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCT 666 Query 6624 GAGTCCCGTATGGTT---TGC-CTGTCTAAAGCTACTGCTTGAGAAACTTGGTTACT-CG 6678 || || || ||||| || ||| | || | |||| | |||| |||| |||| || Sbjct 665 CAGCCCAGTGTGGTTCAGGGCGCTGGAGATAG-TCCTGC--GGGAAA-TTGGATACTCCG 610 Query 6679 CACAAGGAGACCAATTACATTGACTACCTGTGCAACTCCCATCACCTGTACAGGGATAAA 6738 | | | || | ||| || | || ||||||| ||||| | ||||| Sbjct 609 AAGACGCAG-TGTCTCTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAA 551 Query 6739 CATTACTTTGTGCGGGGTGGCATGCCATCAGGATGCTCTGGCACAAGCATCTTCAACTCA 6798 ||| | ||| | || || ||||| ||||| ||||| ||||| ||| |||||||| Sbjct 550 ACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCG 491 Query 6799 ATGATAAATAACATCATAATCAGGACACTAATGTTGAAGGTGTACAAAGGGATCGACTTG 6858 ||||| || || ||||| || || ||||| || | || | ||||||||| || | Sbjct 490 ATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTA 431 Query 6859 GATCAATTCAGAATGATTGCTTATGGTGATGACGTGATCGCATCATATCCGTGGCCCATA 6918 ||| || | | ||| | || || || ||||| ||| | || || || | || || Sbjct 430 GATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATT 371 Query 6919 GA-TGCGTCCCTGCTTGCTGAAGCTGGTAGGGATTGTGGGTTGATCATGACACCAGCAGA 6977 || || | | | || | | || | ||| | ||| | | ||||| || || || Sbjct 370 GACTGTCT-GGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGA 312 Query 6978 CAAAGGGGATTGCTTCAATGAAGTCACCTGGGCTAATGTCACATTTCTAAAGAG-GTATT 7036 ||| ||||| ||||| || || |||| |||| ||| || | ||||| | ||| Sbjct 311 CAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATT 252 Query 7037 TTAGAGCAGATGAACAGTACCCCTTTTTAGTGCACCCCGTCATGCCTATGAAAGACATAC 7096 | | | ||| | || | ||| ||| | | ||||| ||||| |||| || || | Sbjct 251 CTTG-CCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTC 193 Query 7097 ATGAATCAATCAGATGGACCAAGGACCCAAAGAACACCCAAGATCATGTGCGCTCGTTGT 7156 | ||||| || | |||||||| || || | || |||||||| |||||||| | | Sbjct 192 ACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCT 133 Query 7157 GCTTATTGGCCTGGCACAACGGGGAGCACGAATATGA 7193 ||||||| || |||||||||||| | | || ||||| Sbjct 132 GCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGA 96 >seq1 Length=805 Score = 210 bits (232), Expect = 1e-50 Identities = 349/499 (70%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 6736 AAACATTACTTTGTGCGGGGTGGCATGCCATCAGGATGCTCTGGCACAAGCATCTTCAAC 6795 |||||| ||| ||| | ||||| ||||| |||||||| ||||| || |||||| || Sbjct 251 AAACAT-ACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAAT 309 Query 6796 TCAATGATAAATAACATCATAATCAGGACACTAATGTTGAAGGTGTACAAAGGGATCGAC 6855 |||||||| || |||||||| ||||| || || || | || | || || || ||| Sbjct 310 TCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGAC 369 Query 6856 TTGGATCAATTCAGAATGATTGCTTATGGTGATGACGTGATCGCATCATATCCGTGGCCC 6915 ||||| | || | ||| | || ||||| || || ||| | || || || | ||| Sbjct 370 CTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCC 429 Query 6916 ATAGATGCGTCCCT---GCTTGCTGAAGCTGGTAGGGATTGTGGGTTGATCATGACACCA 6972 || ||| | ||| | | ||| | |||| | || | ||| |||| |||||| || Sbjct 430 ATTGAT---TGCCTTGAGTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCT 486 Query 6973 GCAGACAAAGGGGATTGCTTCAATGAAGTCACCTGGGCTAATGTCACATTTCTAAAGAG- 7031 ||||||||| || ||||||||||| || |||| |||| || || || ||||| Sbjct 487 GCAGACAAATCACCCTGTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGA 546 Query 7032 GTATTTTAGAGCAGATGAACAGTACCCCTTTTTAGTGCACCCCGTCATGCCTATGAAAGA 7091 | ||| | | |||| | || | || || ||| | ||||| ||||| |||| ||| Sbjct 547 GGATTCTTGC-CAGACCACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGA 605 Query 7092 CATACATGAATCAATCAGATGGACCAAGGACCCAAAGAACACCCAAGATCATGTGCGCTC 7151 || |||||||| || ||||||| || ||| | |||||||||||||| |||||||| Sbjct 606 GATCCATGAATCCATTCGATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTC 665 Query 7152 GTTGTGCTTATTGGCCTGGCACAACGGGGAGCACGAATATGAGGAGTTCATCCGCAAAAT 7211 |||| | ||||| |||||||| || || | ||||||||| |||| | | ||| Sbjct 666 CCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAAT 725 Query 7212 TAGAAGCGTCCCAGTTGGA 7230 |||| || ||||||||| Sbjct 726 TAGATCAGTTCCAGTTGGA 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23528423902356