Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_001490.1 Length=7212 Score E Sequences producing significant alignments: (Bits) Value seq1 145 4e-31 seq4083 132 2e-27 seq4094 127 9e-26 >seq1 Length=805 Score = 145 bits (160), Expect = 4e-31 Identities = 289/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 6632 GGTGGCATGCCCTCAGGGTGTTCAGGAACCAGCATATTCAATTCCATGATCAACAACATA 6691 ||||| ||||||||||| ||||| || || ||| || ||||| |||||||||||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6692 ATCATTAGGAC---TTTGATATTAGATGCATATAAAGGAATAGATTTAGACAAACTTAAA 6748 ||||| || || |||||| | | | ||| |||||||| | || | | || Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACT---TTTAAGGGAATAGACCTGGATGAGTTGAAC 384 Query 6749 ATCTTAGCTTACGGTGATGATTTGATTGTTTCTTATCCTTATGAACTGGATCCACAAGTG 6808 || | || || || || ||| || | | | ||| || | | | ||| | | | Sbjct 385 ATGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAG 444 Query 6809 TTGGCAACTCTTGGTAAAAATTATGGACTAACCATCACACCCCCAGACAAATCTGAAACT 6868 ||||| | ||| ||| | ||||| | ||||| || || |||||||||| | || Sbjct 445 TTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATC--ACCCT 502 Query 6869 TTTACAA--AAATGACATGGGAAAACTTGACATTTTTAAAGAGATACTTCAAGCCTGATC 6926 || ||| || | ||||||||||| || || | |||||| ||| ||| || | Sbjct 503 GTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACC 562 Query 6927 AACAATTTCCCTTTTTGGTTCACCCAGTTATGCCCATGAAAGATATACATGAGTCAATCA 6986 | |||||||| || || ||||||| |||||||||| ||| || ||||| || || Sbjct 563 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 622 Query 6987 GATGGACAAAGGATCCTAAAAACACACAGGATCACGTCCGATCATTATGCATGTTAGCAT 7046 ||||||| || || | ||||| || |||||||| || || | || |||| |||| Sbjct 623 GATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCAT 682 Query 7047 GGCAC 7051 ||||| Sbjct 683 GGCAC 687 >seq4083 Length=3246 Score = 132 bits (146), Expect = 2e-27 Identities = 286/423 (68%), Gaps = 6/423 (1%) Strand=Plus/Minus Query 6632 GGTGGCATGCCCTCAGGGTGTTCAGGAACCAGCATATTCAATTCCATGATCAACAACATA 6691 || || ||||||||||| || ||||| ||| ||| ||||| || ||||||||||| || Sbjct 535 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 476 Query 6692 ATCATTAGGACTTTGAT-ATTAGATGCATATAAAGGAATAGATTTAGACAAACTTAAAAT 6750 || ||||| || | | |||| | ||| ||||| |||||| |||| |||| || || Sbjct 475 ATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGATCTAGATGAACTGAACAT 417 Query 6751 CTTAGCTTACGGTGATGATTTGATTGTTTCTTATCCTTATGAACTGGATCCACAAGTGTT 6810 | || ||||| |||||| || | | | ||| || | | | || | | ||| Sbjct 416 GGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGAGTT 357 Query 6811 GGCAACTCTTGGTAAAAATTATGGACTAACCATCACACCCCCAGACAAATCTGAAACT-- 6868 ||||| || || | ||||| ||||| || || || | ||||| || | || Sbjct 356 GGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTC--ACCCTGC 299 Query 6869 TTTACAAAAATGACATGGGAAAACTTGACATTTTTAAAGAGATACTTCAAGCCTGATCAA 6928 |||| | | |||||||| || || || || |||||| ||| ||||||||| Sbjct 298 TTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCAT 239 Query 6929 CAATTTCCCTTTTTGGTTCACCCAGTTATGCCCATGAAAGATATACATGAGTCAATCAGA 6988 ||||| || ||| | | ||||| ||||| |||| || || || || || || | Sbjct 238 CAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGT 179 Query 6989 TGGACAAAGGATCCTAAAAACACACAGGATCACGTCCGATCATTATGCATGTTAGCATGG 7048 ||||| || ||| | || || || |||||||| || || | ||| | ||||||||| Sbjct 178 TGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGG 119 Query 7049 CAC 7051 ||| Sbjct 118 CAC 116 >seq4094 Length=3074 Score = 127 bits (140), Expect = 9e-26 Identities = 156/207 (75%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 401 GGACGCCCTTTTAAGGACATGGTGTGAAGACTCGCATGTGCTTGGTTGTGAGTCCTCCGG 460 |||||| || | |||||||||| ||||| || || ||| | | ||| ||||||||| Sbjct 16 GGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTG-GTCCTCCGG 74 Query 461 CCCCTGAATGCGGCTAACCTTAACCCTAGAGCCTTATGCCA-CGATCCAGTGGTTGTAAG 519 ||||||||||||||||| | |||| |||| ||||| | |||||| || | Sbjct 75 CCCCTGAATGCGGCTAATCCTAACTGCGGAGCAC-ATGCCTTCAATCCAGAGGGTAGTGT 133 Query 520 GTCGTAATGAGCAATTCCGGGACGGGACCGACTACTTTGGGTGTCCGTGTTTCTCATTTT 579 ||||||||| |||| || | ||| ||||||||||||||||||||||||||| || | Sbjct 134 GTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTAT 193 Query 580 TCTTCATATTG---TCTTATGGTCACA 603 |||| |||||| |||||||| ||| Sbjct 194 TCTT-ATATTGGCTGCTTATGGTGACA 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22962052213152