Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_001617.1 Length=7152 Score E Sequences producing significant alignments: (Bits) Value seq4094 104 1e-18 seq4083 82.4 3e-12 >seq4094 Length=3074 Score = 104 bits (114), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 406 GACAAGGTGTGAAGAGCCGCGTGTGCTCAGT--GTGCTTCCTCCGGCCCCTGAATGTGGC 463 |||| |||| |||||| | || ||| ||| ||| | ||||||||||||||||| ||| Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCT-AGTTAGTGGT-CCTCCGGCCCCTGAATGCGGC 88 Query 464 TAACCTTAACCCTGCAGCCGTTGCCCATAATCCAATGGGTTTGCGGTCGTAATGCGTAAG 523 ||| | |||| | ||| |||| |||||| |||| ||||||||| | || Sbjct 89 TAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAAC 148 Query 524 TGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCTTTTGATTGCATT 583 | | || ||| ||||||||||||||||||||||||| || ||||| | | || Sbjct 149 TCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGC 208 Query 584 TTATGGTGACAAT 596 ||||||||||||| Sbjct 209 TTATGGTGACAAT 221 >seq4083 Length=3246 Score = 82.4 bits (90), Expect = 3e-12 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 6195 TACTTTTCTGAAAGATGAACTTAGAAAGAAGGAAAAAATAAAAGATGGAAAGACTAGAGT 6254 ||||| | | |||||||||||||| | || || || || | || ||| || | | Sbjct 923 TACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCT 864 Query 6255 CATAGAAGCTAATAGTGTGAATGATACTGTGTTATTCAGAAGTGTATTTGGAAATCTTTT 6314 ||||||||| | || | ||||| | |||| || |||| |||||| | |||| Sbjct 863 CATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTA 804 Query 6315 CTCTGCTTTCCACAAAAACCCAGGTATAGTCACTGGTTCAGCAGTAGGGTGTGACCCTGA 6374 ||||||||| || ||||||| | |||| |||||||| || ||||| |||| || Sbjct 803 TGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGA 744 Query 6375 AGTATTCTGG 6384 || |||||| Sbjct 743 TGTGTTCTGG 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22770061810032