Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_001617.1
Length=7152
Score E
Sequences producing significant alignments: (Bits) Value
seq4094 104 1e-18
seq4083 82.4 3e-12
>seq4094
Length=3074
Score = 104 bits (114), Expect = 1e-18
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 406 GACAAGGTGTGAAGAGCCGCGTGTGCTCAGT--GTGCTTCCTCCGGCCCCTGAATGTGGC 463
|||| |||| |||||| | || ||| ||| ||| | ||||||||||||||||| |||
Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCT-AGTTAGTGGT-CCTCCGGCCCCTGAATGCGGC 88
Query 464 TAACCTTAACCCTGCAGCCGTTGCCCATAATCCAATGGGTTTGCGGTCGTAATGCGTAAG 523
||| | |||| | ||| |||| |||||| |||| ||||||||| | ||
Sbjct 89 TAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAAC 148
Query 524 TGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCTTTTGATTGCATT 583
| | || ||| ||||||||||||||||||||||||| || ||||| | | ||
Sbjct 149 TCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGC 208
Query 584 TTATGGTGACAAT 596
|||||||||||||
Sbjct 209 TTATGGTGACAAT 221
>seq4083
Length=3246
Score = 82.4 bits (90), Expect = 3e-12
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 6195 TACTTTTCTGAAAGATGAACTTAGAAAGAAGGAAAAAATAAAAGATGGAAAGACTAGAGT 6254
||||| | | |||||||||||||| | || || || || | || ||| || | |
Sbjct 923 TACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCT 864
Query 6255 CATAGAAGCTAATAGTGTGAATGATACTGTGTTATTCAGAAGTGTATTTGGAAATCTTTT 6314
||||||||| | || | ||||| | |||| || |||| |||||| | ||||
Sbjct 863 CATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTA 804
Query 6315 CTCTGCTTTCCACAAAAACCCAGGTATAGTCACTGGTTCAGCAGTAGGGTGTGACCCTGA 6374
||||||||| || ||||||| | |||| |||||||| || ||||| |||| ||
Sbjct 803 TGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGA 744
Query 6375 AGTATTCTGG 6384
|| ||||||
Sbjct 743 TGTGTTCTGG 734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 22770061810032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |