Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_001859.1 Length=7414 Score E Sequences producing significant alignments: (Bits) Value seq4083 197 7e-47 seq4094 116 2e-22 seq4303 107 9e-20 >seq4083 Length=3246 Score = 197 bits (218), Expect = 7e-47 Identities = 940/1470 (64%), Gaps = 49/1470 (3%) Strand=Plus/Minus Query 5785 TGAACCTTGCTGGCAGGCCAACACATAGAGTTTTGATGTATGAATTCCCCACCAAGGCAG 5844 |||||||| ||| | ||| || || || | ||||||| | ||||| || || |||| Sbjct 1563 TGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAG 1504 Query 5845 GCCAATGCGGTGGTGTGGTTATTAGCATGGGTAAGATAGTGGGTGTCCACGTAGGAGGTA 5904 | || || |||||||| || | | ||||||| | | || ||||| | || || | Sbjct 1503 GACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCA 1444 Query 5905 ACGGTGCCCAAGGTTTTGCCGCCTCCCTTCTACGCAGGTACTTTA-CAGCAGAACAAGGA 5963 ||||| |||||||| ||| |||| | | |||||| ||| |||||||| Sbjct 1443 ACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGT-GAACAAGGT 1385 Query 5964 CAAATTGAATATATCGAGAAGAGTAAAGA---TGCCGGGTACCCCGTGATCAATGCACCC 6020 | || ||| || || | ||||| || | ||| | ||||| | ||| Sbjct 1384 GAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAAC---ATCAACGGACCT 1328 Query 6021 ACCCAAACCAAATTAGAGCCCAGTGTTTTCTTTGATGTTTTCCCCGGGGTGAAAGAACCA 6080 || | || || | || || ||||| || ||||| ||| || ||||| ||| Sbjct 1327 ACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCA 1268 Query 6081 GCGGTACTCCACAAG-AAGGACAAGAGGCTTGAAACCAACTTTGAGGAAGCTCTATTTTC 6139 || || || || || || ||| ||||| ||| ||||||| | ||||| ||||| Sbjct 1267 GCAGTGCTG-ACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTC 1209 Query 6140 CAAGTACATAGGAAATGTACAAAGGGACATG--CCTGAGGAATTACTCATTG------CC 6191 || ||| | || || | | |||| || || || || ||| | || Sbjct 1208 AAAATACGTGGGGAAC-----ACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGCGGCC 1154 Query 6192 ATAGATCATTATTCTGAACAACTCAAAATGTTGAATATTGACCCGAGGCCCATTTCA--A 6249 || |||||| | | |||||||| ||| |||| | | | || | | | | Sbjct 1153 TTA---CATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACCA--CCAAGATGAGCA 1099 Query 6250 TGGAGGATGCAATTTACGGTACAGAGGGGCTTGAGGCACTTGATCTTGGAACTAGTGCGA 6309 ||||||||||| |||||| |||||| || || || | |||||| || ||||| Sbjct 1098 TGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAAGTGCAG 1039 Query 6310 GCTACCCGTACGTTGCAATGGGCATCAAGAAAAGAGATATTTTGAATAAAGAGACCAGGG 6369 | || || ||| |||| | ||||||||||||| || |||||| || | || | | Sbjct 1038 GATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCG 979 Query 6370 ATGTCACTAAGATGCAAGAGTGCATAGATAAGTATGGTTTAAATCTACCCATGGTC-ACC 6428 |||||| |||||| || | ||| || |||||||| || ||||| || | || || Sbjct 978 ATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTA-CCGTACTCTACT 920 Query 6429 TATGTCAAGGATGAACTCAGGGCGCCAGATAAGATCAGGAAAGGAAAAAGCCGTTTGATA 6488 ||||| || |||||||| ||||| || ||||||| |||||| || ||| | ||| Sbjct 919 TATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATA 860 Query 6489 GAGGCATCTAGCTTGAATGATTCAGTAGCCATGCG-GTGCTACTTTGGGAACCTCTACAA 6547 || || ||| | ||||| ||||| | || | || | |||||| |||| || | Sbjct 859 GAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACA-TTTGGGCACCTTTATGA 801 Query 6548 GGTTTTCCACACCAACCCTGGAACCATCTCCGGCTGTGCCGTTGGATGCGACCCTGAAAC 6607 | ||||||| |||| || || || ||| |||| | || ||||| ||| |||| || Sbjct 800 AGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGT 741 Query 6608 CTTCTGGAGCAAGATCCCAGTGATGATGGATGGTGAGCTTTTTGGCTTTGATTATACTGC 6667 |||||||||||| | ||| | | | || |||||| | ||||| || | | Sbjct 740 GTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGG 681 Query 6668 ATATGATGCTAGCCTGTCTCCCATGTGGTTCCATGCCCTGGCAGA-AGTCCTTAGACGGA 6726 ||||| ||||| || || |||||||| || |||| ||| |||||| | | Sbjct 680 GTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGG-AGATAGTCCTGCGGGAAA 622 Query 6727 TTGGATTTGTTGAGTGCAAGCACTTTAT-TGATCAACTTTGCTGCAGCCACCACCTTTAT 6785 ||||| | | | | ||| | | | | || | | || ||| || | || Sbjct 621 TTGGA--TACTCCGAAGACGCAGTGTCTCTCAT--AGAAGGGATCAATCACACCCATCAT 566 Query 6786 ATG------GATAAGCACTATTATGTGGTTGGGGGCATGCCTTCTGGCTGCTCTGGCACC 6839 || |||| |||| ||| ||||||| ||||| || || ||||| |||||| Sbjct 565 GTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACC 506 Query 6840 TCCATCTTCAATTCTATGATTAACAACCTAATCATCCGCACTCTTGTGCTCACAGTTTAT 6899 ||||| ||||| || ||||| ||||| | || || | || || || | | | | Sbjct 505 TCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTC 446 Query 6900 AAAAATATTGATTTGGATGATCTTAAGATAATAGCCTACGGGGATGACGTGCTCGCGTCG 6959 ||| || ||| | ||||| || || || | |||||||||||||| ||| | || Sbjct 445 AAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGT 386 Query 6960 TACCCGTATGAGATTGA-TGCCAGCCTCTTGGCAGAAGCTGGTAAAAGCTTTGGTCTAAT 7018 ||||| | ||||| || | | |||||| | | || || | |||||||| Sbjct 385 TACCCCTTCCCAATTGACTGTCTG-GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAAC 327 Query 7019 CATGACTCCACCAGATAAATCTGCGGAGTTTGTCAAATTAACCTGGGATAACGTGACCTT 7078 ||||| || | || || || | ||| | | || ||||| || | || || Sbjct 326 TATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTT 267 Query 7079 TTTGAAGAGGAAGTTCGTGCGTGATGCACGGTACCCTTTCCTTGTACATCCGGTCATGGA 7138 |||||||| ||| ||| |||| | | ||| || || | || || ||| Sbjct 266 CTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCC 207 Query 7139 CATGTCGAACATCCATGAGTCCATTCGGTGGACGAAAGATCCCAGGCATACTGAAGACCA 7198 ||| | | || || || |||||||| ||||| |||||| | | |||| |||| || Sbjct 206 AATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCA 147 Query 7199 TGTCCGCTCACTTTGCCTATTGGCCTGGCA 7228 || ||||| || ||| |||| || ||||| Sbjct 146 CGTGCGCTCCCTCTGCTTATTAGCATGGCA 117 >seq4094 Length=3074 Score = 116 bits (128), Expect = 2e-22 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 1017 CCACTTAAGTCACCAAGCGCAGAAGCGTGCGGTTACAGTGATCGCGTAGCCCAGTTGACA 1076 ||| | || || ||| || || || || |||||||||||||| || || || || || Sbjct 563 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 622 Query 1077 CTTGGCAACAGCACTATCACTACCCAAGAGGCAGCAAATATATGCGTTGCTTATGGCTGC 1136 ||||||| || |||||||| ||||| |||||||| || |||| ||||| Sbjct 623 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 682 Query 1137 TGGCCTGCAAAGCTTAGCGACACTGATGCCACATCAGTGGACAAGCCCACTGAACCAGGT 1196 |||||| | | | ||| |||||||||| |||||||||| || || |||| | Sbjct 683 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 742 Query 1197 GTATCAGCGGAGCGCTTTTATACCCTCCGTTCCAAGCCGTGGCAGGCAGATA-GCAAGGG 1255 || || | | | | ||||| || | | || |||| | | || | |||||| Sbjct 743 GTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGA-GAAGTCATCCAAGGG 801 Query 1256 GTGGTATTGGAAGCTACCCGATGCACTCAACAATACAGGAATGTTTGGACAGAACGCCCA 1315 |||||| ||||| | || |||| | | | || || | ||||| || || || || Sbjct 802 GTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACA 861 Query 1316 GTTCCACTACATCTATAGAGGTGGG-TGGGCAGTGCACGTCCAATGCAATGCAACCAAAT 1374 |||||||||| ||||| | ||| | ||| | ||||| || |||||||| | || | Sbjct 862 GTTCCACTACCTCTATCGGTCAGGGTTCTGCA-TTCACGTGCAGTGCAATGCTAGTAAGT 920 Query 1375 TCCACCAGGGCACGCTCCTTGT 1396 ||||||| || | ||||| || Sbjct 921 TCCACCAAGGAGCACTCCTAGT 942 Score = 89.7 bits (98), Expect = 2e-14 Identities = 124/166 (75%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 495 GCCAAGAGCCTATTGTGCTAGAGAGGTTTTCCTCCGGAGCCGTGAATGCTGCTAATCCCA 554 || ||||| |||||| ||||| || | |||||||| || ||||||| |||||||| | Sbjct 39 GCGAAGAGTCTATTGAGCTAGTTAG-TGGTCCTCCGGCCCC-TGAATGCGGCTAATCCTA 96 Query 555 ACCTCCGAGCGTGTGCGCACAATCCAGTGT-TGCTACGTCGTAACGCGCAAGTTGGAGGC 613 || | |||| ||| |||||||| | | | ||||||| | |||| | | || Sbjct 97 ACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCAGC 156 Query 614 GGAACAGACTACTTTCGGTACTCCGTGTTTCCTTATTATT-TTATA 658 ||||| ||||||||| ||| ||||||||||||| ||||| ||||| Sbjct 157 GGAACCGACTACTTTGGGTG-TCCGTGTTTCCTT-TTATTCTTATA 200 >seq4303 Length=1160 Score = 107 bits (118), Expect = 9e-20 Identities = 305/460 (66%), Gaps = 14/460 (3%) Strand=Plus/Plus Query 4164 AAGTTTATTGATTGGCTTAAACAAAAGATCCTACCAGAACTCAAAGAGAGAGCAGAGTTC 4223 ||||| ||||| ||||| | | ||||| | |||| | ||| |||| |||||| || Sbjct 703 AAGTTCATTGACTGGCTCAGGGAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTT 762 Query 4224 GTCAAGAAGTTAAAACAGCTCCCACTCTTAGAGGCTCAGGTGAACACTCTGGAACACTCT 4283 | | || || || || | ||||| |||||| ||| | | | | || || || Sbjct 763 TTAACCAATTTGAAGCAATTGCCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCC 822 Query 4284 TCCGCTAGTCAGGAGAGG--CAAGAACAATTGTTTGGGAATGT-TCAGTACCTTGCCCAT 4340 | || ||| ||||| | ||| ||||||||||||| ||| ||||| |||||| Sbjct 823 GCTGCC--TCACAAGAGGACCTTGAAGCTATGTTTGGGAATGTGTCA-TACCTCGCCCAT 879 Query 4341 CATTGTAGAAAGAACGCCCCGCTTTATGCCGCAGAAGCTAAGCGCGTCTACCATCTAGAG 4400 ||| | ||| | || | || ||| | ||||||||||| ||||| ||||||| Sbjct 880 TTCTGTCGCAAGTTCCAACCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAG 939 Query 4401 AAGCGCGTCCTCCGTGCCATGCAGTTCAAGACCAAGAACCGCATTGAACCTGTATGTGCA 4460 ||| | | | |||||||||||||| ||| |||| ||||||||||||||| Sbjct 940 AAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTC 999 Query 4461 CTGATTCATGGCTCACCTGGTACCGGTCAGTCGTTGGCTAC---TATGATAG-TAGGAAG 4516 | ||| |||||||| || || || |||| | || || ||| || | | || Sbjct 1000 ATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTC 1059 Query 4517 AAAACTGGCTGAGTACGAAGGTTCCGACGTCTACTCCCTACCGCCTGACCCGGATCATTT 4576 | | | | | |||| | || || ||||| || || || ||||| || ||||| Sbjct 1060 ATAGCAGAC-AAGTATCA---CTCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTT 1115 Query 4577 TGATGGCTACCAACAACAAGCCGTCGTAGTGATGGATGAT 4616 ||| || || |||| |||| ||| ||| ||||||||| Sbjct 1116 TGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGAT 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23608419903656