Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_002058.3 Length=7440 Score E Sequences producing significant alignments: (Bits) Value seq4083 484 3e-133 seq1 255 3e-64 seq4094 235 3e-58 seq4303 84.2 1e-12 >seq4083 Length=3246 Score = 484 bits (536), Expect = 3e-133 Identities = 1025/1498 (68%), Gaps = 31/1498 (2%) Strand=Plus/Minus Query 5840 ACTCTAATGTACAACTTTCCAACCAGAGCAGGACAGTGTGGTGGAGTCATCACATGTACT 5899 ||| | |||||||| || ||||| | |||||||||||||||||| || | ||| | | Sbjct 1534 ACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGACA-GCCGT 1476 Query 5900 GGG-AAAGTCATCGGGATGCATGTTGGTGGGAACGGTTCACACGGGTT-TGCAGCGGCCC 5957 ||| ||||| || ||||| || ||||||| |||||| || || || ||| || |||| Sbjct 1475 GGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGC-GCTGCCC 1417 Query 5958 TGAAGCGATCATACTTCACTCAGAGT-CAAGGTGAAATCCAGTGGATGA-GACCTTCGAA 6015 ||||| | |||||| ||| | |||||||| ||||| ||||||| | || | || Sbjct 1416 TGAAGAGGGGATACTTTTG-CAGTGAACAAGGTGAGATCCAATGGATGAAGCCCAACAAA 1358 Query 6016 GGAAGTGGGATATCCAATCATAAATGCCCCGTCCAAAACCAAGCTTGAACCCAGTGCTTT 6075 | || ||| | | || ||| || | || | || ||||||||||| |||| || Sbjct 1357 GAAACTGGCAGGTTGAA-CATCAACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTT 1299 Query 6076 CCACTATGTGTTTGAAGGGGTGAAGGAACCAGCAGTCCTCACTAAAAACGATCCCAGGCT 6135 ||| ||||||| ||||| || || |||||||| || |||| || || || ||||| Sbjct 1298 TCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCT 1239 Query 6136 TAAGACAGACTTTGAGGAGGCAATTTTCTCCAAGTACGTGGGTAACAAAATTACTGAAGT 6195 | |||||||| |||| |||| || || |||||||| |||| || |||| Sbjct 1238 GGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTTCATGAACC 1179 Query 6196 GGATGAGTACATGAAAGAGGCAGTAGACCACTATGCTGGCCAGCTCATGTCACTAGACAT 6255 || |||| | || ||||| | || ||||| ||| |||| | |||| || Sbjct 1178 CGACGAGTTTGTCAAGGAGGCGGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATAT 1119 Query 6256 CAACACAGAACAA-ATGTGCTTGGAGGATGCCATGT-ATGGCACTGATGGTCTAGAAGCA 6313 ||| || | ||| ||| || |||||||||| |||| | ||||| || || ||||| Sbjct 1118 CAAGACC-ACCAAGATGAGCATGGAGGATGC-ATGTTACGGCACAGAGAACCTGGAAGCT 1061 Query 6314 CTTGATTTGTCCACCAGTGCTGGCTACCCTTATGTAGCAATGGGAAAGAAGAAGAGAGAC 6373 | ||| | ||| ||||| || || || || ||| | || | ||||| | ||| Sbjct 1060 ATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGAC 1001 Query 6374 ATCTTGAA-CAAACAAACCAGAGACACTAAGGAA-ATGCAAAAACTGC-TCGACACATAT 6430 || ||| | | ||||| | | || | || || ||| ||| || | | |||| ||| Sbjct 1000 ATTTTGGATCCAACAACTC-GCGATG-TCAGCAAGATG-AAATTCTACATGGACAAGTAT 944 Query 6431 GGAATCAACCTCCC--ACTGGTGACTTATGTAAAGGATGAACTTAGATCCAAAACAAAGG 6488 || | | || || ||| |||||||| || ||||||||||| ||| ||| Sbjct 943 GGGTTGGATCTACCGTACTCT--ACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGA 886 Query 6489 TTGAGCAGGGGAAATCCAGATTAATTGAAGCTTCTAGTTTGAATGACTCAGTGGCAATGA 6548 | || | ||||| || | | || ||||| || | |||||||||||| ||| Sbjct 885 TCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGA 826 Query 6549 GAATGGCTTTTGGGAACCTATATGCTGCTTTTCACAAAAACCCAGGAGTGATAACAGGTT 6608 ||||| | |||||| |||| |||| ||||| ||| || ||||| || || |||| Sbjct 825 GAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTT 766 Query 6609 CAGCAGTGGGGTGCGATCCAGATTTGTTTTGGAGCAAAATTCCGGTATTGATGGAAGAGA 6668 |||| || |||||| | |||||| |||| |||||||| | || | | | || Sbjct 765 CAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGAT 706 Query 6669 AGCTGTTTGCTTTTGACTACACAGGGTATGATGCATCTCTCAGCCCTGCTTGGTTCGAGG 6728 ||| || || ||||||||| | |||||||| || ||||||||| | |||||| || Sbjct 705 CGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGG 646 Query 6729 CACTAAAGATGGTGCTTGAGAAAATCGGATTC---GGAGACAGAGTTGACTA-CATCGAC 6784 | || |||| || || | |||| |||| | | |||| ||| | || ||| || Sbjct 645 CGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGAAGACGCAGT-GTCTCTCATAGAA 587 Query 6785 TACCTAAACCACTCACACCACCTGTACAAGAATAAAACATACTGTGTCAAGGGCGGTATG 6844 | || ||| | || || ||||| |||||||| || ||||| || || ||| Sbjct 586 GGGATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATG 527 Query 6845 CCATCTGGCTGCTCAGGCACTTCAATTTTTAACTCAATGATTAACAACTTGATTATCAGG 6904 || || || ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || Sbjct 526 CCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGA 467 Query 6905 ACACTCTTACTGAAAACCTACAAGGGCATAGATTTAGACCACCTAAAAATGATTGCCTAT 6964 |||||| | | ||||| | ||| || |||||| |||| | || || ||| | ||||| Sbjct 466 ACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTAC 407 Query 6965 GGTGATGATGTAATTGCTTCCTACCCCCATGAAGTTGAC--GCTAGTCTCCTAGCCCAAT 7022 || |||||||| | ||| |||||| | ||||| || | | | || | Sbjct 406 GGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGAGT--TGGCAAGAA 349 Query 7023 CAGGAAAAGACTATGGACTAACTATGACTCCAGCTGACAAATCAGCTACATTTGAAACAG 7082 |||| || || ||||| ||||||||||| || || ||||| ||| | ||| | | Sbjct 348 CAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGG 289 Query 7083 TCACATGGGAGAATGTAACATTCTTGAAGAGATTCTTCAGGGCAGACGAGAAATACCCAT 7142 | ||||||||||||| || |||||||||||| ||| | | || | ||| ||| | Sbjct 288 TTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGT 229 Query 7143 TTCTTATTCATCCAGTAATGCCAATGAAGGAAATTCATGAATCAATTAGATGGACTAAAG 7202 |||| || || || |||||||||| ||| ||||| ||||| ||| | ||||| |||| Sbjct 228 TTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAG 169 Query 7203 ATCCTAGGAACACTCAGGATCACGTTCGCTCTCTGTGCCTTTTAGCTTGGCACAATGGCG 7262 || | | | ||||| |||||||| ||||| || ||| | ||||| |||||||| || Sbjct 168 ATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGA 109 Query 7263 AAGAAGAATATAACAAATTCCTAGCTAAAATCAGGAGTGTGCCAATTGGAAGAGCTTT 7320 |||| || ||| | ||||| | | |||||| || |||||||||| ||| || Sbjct 108 AAGAGGAGTATGAAAAATTTGTGAGTGCAATCAGATCAGTTCCAATTGGAAAAGCATT 51 Score = 194 bits (214), Expect = 8e-46 Identities = 456/676 (67%), Gaps = 18/676 (3%) Strand=Plus/Minus Query 4126 TGACAGTTGGTTGAAGAAGTTTACTGAAGCATGCAACGCAGCTAAGGGACTGGAGTGGGT 4185 |||| |||||| |||||||| | || || | || || ||||| || |||||| | Sbjct 3245 TGACTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGAT 3186 Query 4186 GTCAAACAAAATCTCAAAATTCATTGATTGGCTCAAGGAGAAAATTATCCCACAAGCTAG 4245 || ||||||||| ||||| || |||||||||||||||||||| || || |||| Sbjct 3185 CTCCAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAA 3126 Query 4246 AGATAAGTTGGAATTTGTAACAAAACTTAGACAACTAGAAATGCTGGAAAACCAAATCTC 4305 ||| || | || ||| ||| || || | ||||| | |||| |||||||| || Sbjct 3125 AGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTC 3066 Query 4306 AACTATACACCAATCATGCCCTAGTCAGGAACACC---AGGAAATTCTATTCAATAATGT 4362 | | | | || ||| || ||||| ||| ||| || | ||| ||| Sbjct 3065 TAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACG-TGT 3007 Query 4363 CAGA--TGGTTATCCA-TCCAGTCTAAGAGGTTTGCCCCTCTTTACGCAGTGGAAGCCAA 4419 | | ||| ||| | | | | | | ||||||| | | || |||||| || Sbjct 3006 CTTACCTGGC---CCACTTCTGCCGCAAATTCCAACCCCTCTATGC-CAC-GGAAGCAAA 2952 Query 4420 AAGAATACAGAAACTAGAGCATACTATTAACAACTACATACAGTTCAAGAGCAAACACCG 4479 || | | ||||| | | || || || ||||| |||||||||||||||||||| Sbjct 2951 GAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCG 2892 Query 4480 TATTGAACCAGTATGTTTGCTAGTACATGGCAGCCCCGGAACAGGTAAATCTGTAGCAAC 4539 ||||||||| ||||| | | | ||| || || || || || || | ||||| Sbjct 2891 TATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAAC 2832 Query 4540 CAACCTGATTGCTAGAGCCATAGCTGAAAGAGAAAACACGTCCAC---GTACTCGCTACC 4596 | ||||||||||||||||| || | || | ||| |||| ||| || |||| Sbjct 2831 AGGGATTATTGCTAGAGCCATAGCAGACA-AGTAC-CAC-TCCAGTGTGTATTCCTTACC 2775 Query 4597 CCCGGATCCATCACACTTCGACGGATACAAACAACAGGGAGTGGTGATTATGGACGACCT 4656 || || ||| ||||| |||||||||||||||||| || ||||||||||||| Sbjct 2774 TCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCT 2715 Query 4657 GAATCAAAACCCAGATGGTGCGGACATGAAGCTGTTCTGTCAGATGGTATCAACAGTGGA 4716 ||||||||||| || |||||| || || ||||||||||| || |||||||| Sbjct 2714 ATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGA 2655 Query 4717 GTTTATACCACCCATGGCATCCCTGGAGGAGAAAGGAATCCTGTTTACTTCAAATTACGT 4776 |||||||| || |||||||| ||||||||||| ||| || || || || || | || Sbjct 2654 TTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGT 2595 Query 4777 TCTAGCATCCACAAAC 4792 | || ||||| ||| Sbjct 2594 GATTGCCTCCACTAAC 2579 >seq1 Length=805 Score = 255 bits (282), Expect = 3e-64 Identities = 467/678 (69%), Gaps = 17/678 (3%) Strand=Plus/Plus Query 6614 GTGGGGTGCGATCCAGATTTGTTTTGGAGCAAAATTCCGGTATTGATGGAAGAGAAGCTG 6673 ||||| || | || || |||||||||||||| | ||| | || || | | ||| Sbjct 43 GTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTC 102 Query 6674 TTTGCTTTTGACTACACAGGGTATGATGCATCTCTCAGCCCTGCTTGGTTCGAGGCACTA 6733 ||||| ||||||||| |||| |||||||| ||||||||| | |||||| ||| || Sbjct 103 TTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTTTA 162 Query 6734 AAGATGGTGCTTGAGAAAATCGG--ATTC---GGAGACAGAGTTGACTACATCGACTACC 6788 | | ||| | | | || || |||| |||| | | || ||| || || Sbjct 163 GAAGTTGTGTTACGGGAGATTGGGTATTCAGAGGAGGCCGTGTCC-CTA-ATAGAAGGGA 220 Query 6789 TAAACCACTCACACCACCTGTACAAGAATAAAACATACTGTGTCAAGGGCGGTATGCCAT 6848 | |||||| | ||||| |||| ||| |||||||||||||| || || ||||| | Sbjct 221 TCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCT 280 Query 6849 CTGGCTGCTCAGGCACTTCAATTTTTAACTCAATGATTAACAACTTGATTATCAGGACAC 6908 | || || || || ||||| || ||||| |||||||| |||||| | || ||||| || | Sbjct 281 CAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCC 340 Query 6909 TCTTACTGAAAACCTACAAGGGCATAGATTTAGACCACCTAAAAATGATTGCCTATGGTG 6968 | || | ||||| | ||||| ||||| | || | | || ||| | |||||||| | Sbjct 341 TTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTATGGGG 400 Query 6969 ATGATGTAATTGCTTCCTACCCC-----CATGAAGTTGACGCTAGTCTCCTAGCCCAATC 7023 | ||||| | ||| |||||| ||| | ||| | ||| ||| | | Sbjct 401 ACGATGTGCTGGCTAGTTACCCCTTTCCCATTGA-TTGCCTTGAGTTGGCTA----AGAC 455 Query 7024 AGGAAAAGACTATGGACTAACTATGACTCCAGCTGACAAATCAGCTACATTTGAAACAGT 7083 || ||||| ||||| | || |||||||| || ||||||||| | || | ||| Sbjct 456 TGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGT 515 Query 7084 CACATGGGAGAATGTAACATTCTTGAAGAGATTCTTCAGGGCAGACGAGAAATACCCATT 7143 |||||||| |||| || ||| |||||||| ||| | ||||| | ||| ||||| Sbjct 516 AACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATT 575 Query 7144 TCTTATTCATCCAGTAATGCCAATGAAGGAAATTCATGAATCAATTAGATGGACTAAAGA 7203 | ||||| || ||||| |||| || || |||||||| ||| ||||||||||||| Sbjct 576 CTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGA 635 Query 7204 TCCTAGGAACACTCAGGATCACGTTCGCTCTCTGTGCCTTTTAGCTTGGCACAATGGCGA 7263 | | ||||| || |||||||| ||||| ||||| || || || ||||||||||| | Sbjct 636 CGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAA 695 Query 7264 AGAAGAATATAACAAATT 7281 || |||||| | || || Sbjct 696 GGATGAATATGAGAAGTT 713 >seq4094 Length=3074 Score = 235 bits (260), Expect = 3e-58 Identities = 214/263 (81%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 380 GGCTAACGCCATGGGACGCTAGT-TGTGAACAAGGTGTGAAGAGCCTATTGAGCTACATA 438 || |||| |||| ||||||| || | ||| |||| |||||| ||||||||||| || Sbjct 4 GGGTAAC-CCATAGGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTA 62 Query 439 AGAATCCTCCGGCCCCTGAATGCGGCTAATCCCAACCTCGGAGCAGGTGGTCACAAACCA 498 |||||||||||||||||||||||||||| ||| ||||||| || ||| ||| Sbjct 63 GTGGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCA 122 Query 499 GTGATTGGCCTGTCGTAACGCGCAAGTCCGTGGCGGAACCGACTACTTTGGGTGTCCGTG 558 | | | | |||||||| | |||| || | |||||||||||||||||||||||||||| Sbjct 123 GAGGGTAGTGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTG 182 Query 559 TTTCCTTTTATT-TTATTGTGGCTGCTTATGGTGACAATCACAGA-TTGTTATCATAAAG 616 |||||||||||| |||| |||||||||||||||||||||| ||| |||||| |||| || Sbjct 183 TTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAG 242 Query 617 CGAATTGGATTGGCCATCCGGTG 639 | |||||||||||||||||||| Sbjct 243 C-TATTGGATTGGCCATCCGGTG 264 >seq4303 Length=1160 Score = 84.2 bits (92), Expect = 1e-12 Identities = 163/232 (70%), Gaps = 14/232 (6%) Strand=Plus/Plus Query 4433 CTAGAGCATACTATTAACAACTACATACAGTTCAAGAGCAAACACCGTATTGAACCAGTA 4492 |||||| | | || ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 934 CTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTA 993 Query 4493 TGTTTGCT-AGTACATGGCAGCCCCGGAACAGGTAAATCTGTAGCAACCAACCTGATTGC 4551 ||| | | | || | ||| || || || || || || | || ||| | ||||| Sbjct 994 TGTCTCATCATTAGA-GGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGC 1052 Query 4552 TAGAGCCATAGCTGAAAGAGAAAACACGTCCA---CGTACTCGCTACCCCCGGATCCATC 4608 | | | |||||| || | || | ||| || | |||||| || || || || || Sbjct 1053 TCGGGTCATAGCAGACA-AG-TATCAC-TCTAGTGTGTACTCACTTCCACCAGACCCTGA 1109 Query 4609 ACACTTCGACGGATACAAACAACAGGGAGTGGTGA---TTATGGACGACCTG 4657 || || ||||| || ||||| || |||||| | ||||||| || ||| Sbjct 1110 CCATTTTGACGGGTATAAACAGCA---AGTGGTCACAGTTATGGATGATCTG 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23691615745008