Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_003988.1
Length=7374
Score E
Sequences producing significant alignments: (Bits) Value
seq4083 127 1e-25
seq4094 123 1e-24
seq1 113 2e-21
seq4303 87.8 8e-14
>seq4083
Length=3246
Score = 127 bits (140), Expect = 1e-25
Identities = 253/366 (69%), Gaps = 18/366 (5%)
Strand=Plus/Minus
Query 4278 CCACTGTATGCCAGTGAAGCTAGGCGTGTCTTCCAGATGGAAAAGAAGATGAATAACTAC 4337
|| || ||||||| ||||| | | | || | | | ||||||| |||||||| |||
Sbjct 2974 CCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTAC 2915
Query 4338 ATACAGTTCAAGAGCAAATCAAGGATTGAACCCGTATGTTTATTAATCCATGGGAGTCCT 4397
|| ||||||||||||||| | |||||||| ||||| || | ||| || |||
Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2855
Query 4398 GGTGCTGGAAAGTCTGTGGCAACTTCAATAATTGGCCGTGCAATAGCCGA-GAGT---AT 4453
||| |||| ||||| ||||||| || |||| | || ||||| || ||| |
Sbjct 2854 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCAC 2795
Query 4454 TTCAGGGTCAGTATATTCATTACCACCGGACCC-GACTTTCTTTGATGGGTATAAACAGC 4512
| ||| || ||||| ||||| || ||||| ||| |||||| || || ||||| |
Sbjct 2794 TCCAG----TGTGTATTCCTTACCTCCAGACCCAGAC-CACTTTGACGGATACAAACAAC 2740
Query 4513 AGGAAGTGGTCA---TAATGGATGACCTGCTACAGAACCCAGATGGTAAAGATGTTGGCA 4569
|| | |||| | ||||| ||||| || |||||||| || ||||| || ||
Sbjct 2739 AG---ATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGA-CATGTCA 2684
Query 4570 -TGCTGTGTCAAATGGTGTCCACAGTAGATTTCCACCCACCTATGGCAGCATTGGAGGAA 4628
| | ||||| ||||| |||||||| ||||| || ||||||||| | |||||||
Sbjct 2683 CTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAG 2624
Query 4629 AAAGGA 4634
|| |||
Sbjct 2623 AAGGGA 2618
Score = 105 bits (116), Expect = 3e-19
Identities = 647/1023 (63%), Gaps = 26/1023 (3%)
Strand=Plus/Minus
Query 6183 CTTGAAGCTTTAGATCTGAGCACTAGTGCTGGATATCCATACGTAACCCAAGGCATCAAG 6242
|| |||||| ||||||| ||| ||||| |||||||||||| | | ||||||||||
Sbjct 1069 CTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAG 1010
Query 6243 AAGCGGGACCTCTTTAAGCCAAATA---GAGACCTTAGCAAGTTTAAAGAGTGTATGGAT 6299
|| |||| | || | |||| | | || | |||||| | ||| | |||||
Sbjct 1009 AAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATGGAC 950
Query 6300 AAGTATGGATTGAATCTCCCAATGGTC-ACTTTCTTGAAGGATGAG-TTAAGGCCGCTGT 6357
|||||||| ||| |||| || | || |||| | || ||||| ||| |||| |
Sbjct 949 AAGTATGGGTTGGATCTACCG-TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGA 891
Query 6358 CAAAAGTA-GAAGCCGGAAAAACACGATTAATTGAAGCATCTAGCGTAAATGATTCAGTT 6416
||| | | ||| || || | || | || ||||| ||| ||||||| |||||
Sbjct 890 CAAGATCAAGAAA--GGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTG 833
Query 6417 GCAATGCGTCAGGCATTTGGTAATTTATATGCAGCATTCCATTCAAACCCAGGGGTGATT 6476
|| | | ||||||| | | |||| ||| ||||| | || ||||| ||
Sbjct 832 TACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATC 773
Query 6477 ACCGGTTCTGCCGTTGGATGTGATCCAGACCAGTTTTGGAGTAAAATACCAGTGTTGTTA 6536
|||||||| || ||||| || | ||||| ||| ||||| || ||||| | | |
Sbjct 772 ACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTC 713
Query 6537 GAAGGAGAATTGTTTGCATTTGATTATTCCAATTATGATGCCAGCTTGAGTCCATGTTGG 6596
|||| | || || ||||| || || ||||| || || | || ||| |||
Sbjct 712 CCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGG 653
Query 6597 TTCGCAGCCCTAAA---AGTATTGTTGGAAAAGATTGGATTT---GGAGATAGAACCTAT 6650
||| || || | ||| || ||||| |||||| | ||| | | |
Sbjct 652 TTCAGGGCGCTGGAGATAGTCCTGCGGGAAA---TTGGATACTCCGAAGACGCAGTGTCT 596
Query 6651 TTCATTAATTACTTATGTTTCTCCCATCATATCTTTAAGGATTCTCATTATTATGTGTCT 6710
|||| | | | | |||||||| | | || ||||| ||| |
Sbjct 595 CTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTT 536
Query 6711 GGAGGTATGCCATCGGGATGCTCAGGGACCAGTATATTCAACACAATGATAAATAATCTT 6770
|| || ||||| || || |||||||| ||| || |||||| | ||||| || ||| |
Sbjct 535 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 476
Query 6771 ATAATTCGGACATTATTAGTCAAGGTGTATAAACGAATCTCTTTGTCTGATTTGAGGATG 6830
|| ||| | ||| | | | || | ||| | || | | ||| ||| |||
Sbjct 475 ATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATG 416
Query 6831 ATAGCATATGGTGATGATGTAATAGCC--TCACTCCCTTATAAGATTGA-TG-CTGGAAA 6886
| || || || |||||||| | || | || ||||| | ||||| || |||||
Sbjct 415 GTGGCCTACGGGGATGATGTGTTGGCTAGTTAC-CCCTTCCCA-ATTGACTGTCTGGAG- 359
Query 6887 ATTGGCGATTGCTGGACGAGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGAC 6946
||||| | | || || ||||||||||| ||||| || || ||||| |
Sbjct 358 -TTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTG 300
Query 6947 ATTCACTGATGTGACTTGGGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGA 7006
|| | ||| || || |||||||||| ||| ||||| |||||| || | | ||| |
Sbjct 299 CTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCA 240
Query 7007 GAGATTTCCTTTCCTAATTCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAG 7066
||| || || || || || || ||||| ||||| || ||| ||| |||||| |
Sbjct 239 TCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCG 180
Query 7067 ATGGACACGAAATGCAAAACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTG 7126
||||| | ||||| | || ||||| || || |||||| |||| || || ||
Sbjct 179 TTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATG 120
Query 7127 GCACAATGGCGAGGAAAAATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGG 7186
|||||| || | || | ||| | | ||| | | |||||||||||| ||| | ||
Sbjct 119 GCACAACGGGAAAGAGGAGTATGAAAAATTTGTGAGTGCAATCAGATCAGTTCCAATTGG 60
Query 7187 CAA 7189
||
Sbjct 59 AAA 57
>seq4094
Length=3074
Score = 123 bits (136), Expect = 1e-24
Identities = 147/193 (76%), Gaps = 5/193 (3%)
Strand=Plus/Plus
Query 399 GACAAGGTGGGAAGAGCCTATTGGGCTAGCTGGTT-TCCTCCGGCCTCCTGAATGCGGCT 457
|||| |||| |||||| |||||| ||||| | || |||||||||| |||||||||||||
Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGCC-CCTGAATGCGGCT 89
Query 458 AACCTTAACCCCAGAGCATATGGTAGCAACCCAGCTACTAGTATGTCATAATGCGTAAGT 517
|| | |||| | ||||| ||| ||| |||| |||| |||| ||||| | || |
Sbjct 90 AATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACT 149
Query 518 CTGGGATGGGACCGACTACTTTGGAGAGTCCGTGTTTCTATTGTTTCTT-TAATCAAT-C 575
||| || |||||||||||||| | ||||||||||| || ||||| || | | |
Sbjct 150 CTGCAGCGGAACCGACTACTTTGG-GTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGC 208
Query 576 TTATGGTGACAAT 588
|||||||||||||
Sbjct 209 TTATGGTGACAAT 221
Score = 113 bits (124), Expect = 2e-21
Identities = 174/247 (70%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 869 TGCTGAGGCATGTGGGTACAGCGACCGAGTTGCACAACTGACAATTGGCAATTCCACTAT 928
||||||||||||||| ||||| || || || |||||| | || ||||||||||| || ||
Sbjct 580 TGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCAT 639
Query 929 CACTACTCAGGAAGCCGCCAATGTGGTGGTCGCATATGGACAATGGCCT---GAATATTT 985
|||||| || ||||| || || | | || | ||||| | |||||| | | ||
Sbjct 640 CACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTC 699
Query 986 AGATTCGAAGGATGCAACTGCCGTGGATAAGCCCACACAGCCCGATGTAGCCTCAAATAG 1045
|| || ||||| ||||| ||||| || || || | || ||||| | |||||
Sbjct 700 GGACTC---TGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAG 756
Query 1046 ATTTTACACTCTTAAGACAGTGTCTTGGGAGAAGAGTTCAACTGGCTGGTATTGGAAATT 1105
|||||||| | | ||| | ||||||||| || | || ||||| ||||||||
Sbjct 757 GTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATT 816
Query 1106 CTCGGAT 1112
| |||||
Sbjct 817 CCCGGAT 823
>seq1
Length=805
Score = 113 bits (124), Expect = 2e-21
Identities = 196/285 (69%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6905 AGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGACATTCACTGATGTGACTTG 6964
||| |||||| | || |||||||| || |||||| | |||| ||| || || ||
Sbjct 462 AGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAACATG 521
Query 6965 GGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGAGAGATTTCCTTTCCTAAT 7024
||| |||| |||||| | |||||| || | |||| | |||||| ||| ||||
Sbjct 522 GGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAAT 581
Query 7025 TCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAGATGGACACGAAATGCAAA 7084
||| || ||||| ||||| || || || |||||| ||||||| | | ||
Sbjct 582 TCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCG 641
Query 7085 ACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTGGCACAATGGCGAGGAAAA 7144
|||||||||| || || ||||||||| ||||| ||||||||||| |||| |
Sbjct 642 CAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGA 701
Query 7145 ATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGGCAA 7189
|||| | | ||| | | ||| |||||||| ||||| || ||
Sbjct 702 ATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTGGAAA 746
>seq4303
Length=1160
Score = 87.8 bits (96), Expect = 8e-14
Identities = 188/271 (69%), Gaps = 20/271 (7%)
Strand=Plus/Plus
Query 4278 CCACTGTATGCCAGTGAAGCTAGGCGTGTCT----TCCAGATGGAAAAGAAGATGAATAA 4333
||| | || |||| ||||||| ||| |||| || ||| ||| |||| |||| ||
Sbjct 898 CCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGA--GAAGAGAA--TGAACAA 953
Query 4334 CTACATACAGTTCAAGAGCAAATCAAGGATTGAACCCGTATGTTTATTAATCCATGGGAG 4393
|||||| ||||||||||||||| | |||||||| |||||| | | || ||
Sbjct 954 CTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTC 1013
Query 4394 TCCTGGTGCTGGAAAGTCTGTGGCAACTTCAATAATTGGCCGTGCAATAGCCGA-GAGTA 4452
|| || |||||||||| | || || || |||| || | ||||| || ||||
Sbjct 1014 ACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTA 1073
Query 4453 TTTCAGGGT-CAGTATATTCATTACCACCGGACCC-GACTTTCTTTGATGGGTATAAACA 4510
||| | || || ||| | ||||| ||||| ||| | ||||| |||||||||||
Sbjct 1074 --TCACTCTAGTGTGTACTCACTTCCACCAGACCCTGACCAT-TTTGACGGGTATAAACA 1130
Query 4511 GCAGGAAGTGGTCA---TAATGGATGACCTG 4538
|| ||||||||| | |||||||| |||
Sbjct 1131 GC---AAGTGGTCACAGTTATGGATGATCTG 1158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23480426301576
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