Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_003988.1 Length=7374 Score E Sequences producing significant alignments: (Bits) Value seq4083 127 1e-25 seq4094 123 1e-24 seq1 113 2e-21 seq4303 87.8 8e-14 >seq4083 Length=3246 Score = 127 bits (140), Expect = 1e-25 Identities = 253/366 (69%), Gaps = 18/366 (5%) Strand=Plus/Minus Query 4278 CCACTGTATGCCAGTGAAGCTAGGCGTGTCTTCCAGATGGAAAAGAAGATGAATAACTAC 4337 || || ||||||| ||||| | | | || | | | ||||||| |||||||| ||| Sbjct 2974 CCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTAC 2915 Query 4338 ATACAGTTCAAGAGCAAATCAAGGATTGAACCCGTATGTTTATTAATCCATGGGAGTCCT 4397 || ||||||||||||||| | |||||||| ||||| || | ||| || ||| Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2855 Query 4398 GGTGCTGGAAAGTCTGTGGCAACTTCAATAATTGGCCGTGCAATAGCCGA-GAGT---AT 4453 ||| |||| ||||| ||||||| || |||| | || ||||| || ||| | Sbjct 2854 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCAC 2795 Query 4454 TTCAGGGTCAGTATATTCATTACCACCGGACCC-GACTTTCTTTGATGGGTATAAACAGC 4512 | ||| || ||||| ||||| || ||||| ||| |||||| || || ||||| | Sbjct 2794 TCCAG----TGTGTATTCCTTACCTCCAGACCCAGAC-CACTTTGACGGATACAAACAAC 2740 Query 4513 AGGAAGTGGTCA---TAATGGATGACCTGCTACAGAACCCAGATGGTAAAGATGTTGGCA 4569 || | |||| | ||||| ||||| || |||||||| || ||||| || || Sbjct 2739 AG---ATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGA-CATGTCA 2684 Query 4570 -TGCTGTGTCAAATGGTGTCCACAGTAGATTTCCACCCACCTATGGCAGCATTGGAGGAA 4628 | | ||||| ||||| |||||||| ||||| || ||||||||| | ||||||| Sbjct 2683 CTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAG 2624 Query 4629 AAAGGA 4634 || ||| Sbjct 2623 AAGGGA 2618 Score = 105 bits (116), Expect = 3e-19 Identities = 647/1023 (63%), Gaps = 26/1023 (3%) Strand=Plus/Minus Query 6183 CTTGAAGCTTTAGATCTGAGCACTAGTGCTGGATATCCATACGTAACCCAAGGCATCAAG 6242 || |||||| ||||||| ||| ||||| |||||||||||| | | |||||||||| Sbjct 1069 CTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAG 1010 Query 6243 AAGCGGGACCTCTTTAAGCCAAATA---GAGACCTTAGCAAGTTTAAAGAGTGTATGGAT 6299 || |||| | || | |||| | | || | |||||| | ||| | ||||| Sbjct 1009 AAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATGGAC 950 Query 6300 AAGTATGGATTGAATCTCCCAATGGTC-ACTTTCTTGAAGGATGAG-TTAAGGCCGCTGT 6357 |||||||| ||| |||| || | || |||| | || ||||| ||| |||| | Sbjct 949 AAGTATGGGTTGGATCTACCG-TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGA 891 Query 6358 CAAAAGTA-GAAGCCGGAAAAACACGATTAATTGAAGCATCTAGCGTAAATGATTCAGTT 6416 ||| | | ||| || || | || | || ||||| ||| ||||||| ||||| Sbjct 890 CAAGATCAAGAAA--GGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTG 833 Query 6417 GCAATGCGTCAGGCATTTGGTAATTTATATGCAGCATTCCATTCAAACCCAGGGGTGATT 6476 || | | ||||||| | | |||| ||| ||||| | || ||||| || Sbjct 832 TACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATC 773 Query 6477 ACCGGTTCTGCCGTTGGATGTGATCCAGACCAGTTTTGGAGTAAAATACCAGTGTTGTTA 6536 |||||||| || ||||| || | ||||| ||| ||||| || ||||| | | | Sbjct 772 ACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTC 713 Query 6537 GAAGGAGAATTGTTTGCATTTGATTATTCCAATTATGATGCCAGCTTGAGTCCATGTTGG 6596 |||| | || || ||||| || || ||||| || || | || ||| ||| Sbjct 712 CCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGG 653 Query 6597 TTCGCAGCCCTAAA---AGTATTGTTGGAAAAGATTGGATTT---GGAGATAGAACCTAT 6650 ||| || || | ||| || ||||| |||||| | ||| | | | Sbjct 652 TTCAGGGCGCTGGAGATAGTCCTGCGGGAAA---TTGGATACTCCGAAGACGCAGTGTCT 596 Query 6651 TTCATTAATTACTTATGTTTCTCCCATCATATCTTTAAGGATTCTCATTATTATGTGTCT 6710 |||| | | | | |||||||| | | || ||||| ||| | Sbjct 595 CTCATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTT 536 Query 6711 GGAGGTATGCCATCGGGATGCTCAGGGACCAGTATATTCAACACAATGATAAATAATCTT 6770 || || ||||| || || |||||||| ||| || |||||| | ||||| || ||| | Sbjct 535 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 476 Query 6771 ATAATTCGGACATTATTAGTCAAGGTGTATAAACGAATCTCTTTGTCTGATTTGAGGATG 6830 || ||| | ||| | | | || | ||| | || | | ||| ||| ||| Sbjct 475 ATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATG 416 Query 6831 ATAGCATATGGTGATGATGTAATAGCC--TCACTCCCTTATAAGATTGA-TG-CTGGAAA 6886 | || || || |||||||| | || | || ||||| | ||||| || ||||| Sbjct 415 GTGGCCTACGGGGATGATGTGTTGGCTAGTTAC-CCCTTCCCA-ATTGACTGTCTGGAG- 359 Query 6887 ATTGGCGATTGCTGGACGAGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGAC 6946 ||||| | | || || ||||||||||| ||||| || || ||||| | Sbjct 358 -TTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTG 300 Query 6947 ATTCACTGATGTGACTTGGGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGA 7006 || | ||| || || |||||||||| ||| ||||| |||||| || | | ||| | Sbjct 299 CTTTAATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCA 240 Query 7007 GAGATTTCCTTTCCTAATTCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAG 7066 ||| || || || || || || ||||| ||||| || ||| ||| |||||| | Sbjct 239 TCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCG 180 Query 7067 ATGGACACGAAATGCAAAACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTG 7126 ||||| | ||||| | || ||||| || || |||||| |||| || || || Sbjct 179 TTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATG 120 Query 7127 GCACAATGGCGAGGAAAAATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGG 7186 |||||| || | || | ||| | | ||| | | |||||||||||| ||| | || Sbjct 119 GCACAACGGGAAAGAGGAGTATGAAAAATTTGTGAGTGCAATCAGATCAGTTCCAATTGG 60 Query 7187 CAA 7189 || Sbjct 59 AAA 57 >seq4094 Length=3074 Score = 123 bits (136), Expect = 1e-24 Identities = 147/193 (76%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 399 GACAAGGTGGGAAGAGCCTATTGGGCTAGCTGGTT-TCCTCCGGCCTCCTGAATGCGGCT 457 |||| |||| |||||| |||||| ||||| | || |||||||||| ||||||||||||| Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGCC-CCTGAATGCGGCT 89 Query 458 AACCTTAACCCCAGAGCATATGGTAGCAACCCAGCTACTAGTATGTCATAATGCGTAAGT 517 || | |||| | ||||| ||| ||| |||| |||| |||| ||||| | || | Sbjct 90 AATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACT 149 Query 518 CTGGGATGGGACCGACTACTTTGGAGAGTCCGTGTTTCTATTGTTTCTT-TAATCAAT-C 575 ||| || |||||||||||||| | ||||||||||| || ||||| || | | | Sbjct 150 CTGCAGCGGAACCGACTACTTTGG-GTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGC 208 Query 576 TTATGGTGACAAT 588 ||||||||||||| Sbjct 209 TTATGGTGACAAT 221 Score = 113 bits (124), Expect = 2e-21 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 869 TGCTGAGGCATGTGGGTACAGCGACCGAGTTGCACAACTGACAATTGGCAATTCCACTAT 928 ||||||||||||||| ||||| || || || |||||| | || ||||||||||| || || Sbjct 580 TGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCAT 639 Query 929 CACTACTCAGGAAGCCGCCAATGTGGTGGTCGCATATGGACAATGGCCT---GAATATTT 985 |||||| || ||||| || || | | || | ||||| | |||||| | | || Sbjct 640 CACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTC 699 Query 986 AGATTCGAAGGATGCAACTGCCGTGGATAAGCCCACACAGCCCGATGTAGCCTCAAATAG 1045 || || ||||| ||||| ||||| || || || | || ||||| | ||||| Sbjct 700 GGACTC---TGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAG 756 Query 1046 ATTTTACACTCTTAAGACAGTGTCTTGGGAGAAGAGTTCAACTGGCTGGTATTGGAAATT 1105 |||||||| | | ||| | ||||||||| || | || ||||| |||||||| Sbjct 757 GTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATT 816 Query 1106 CTCGGAT 1112 | ||||| Sbjct 817 CCCGGAT 823 >seq1 Length=805 Score = 113 bits (124), Expect = 2e-21 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6905 AGACTATGGTCTAACAATGACTCCGGCTGACAAAGGAGAGACATTCACTGATGTGACTTG 6964 ||| |||||| | || |||||||| || |||||| | |||| ||| || || || Sbjct 462 AGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTTCAATGAAGTAACATG 521 Query 6965 GGAGAATGTCACCTTCTTAAAGAGATACTTTAGGTCAGATGAGAGATTTCCTTTCCTAAT 7024 ||| |||| |||||| | |||||| || | |||| | |||||| ||| |||| Sbjct 522 GGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAAT 581 Query 7025 TCATCCAGTTATGCCTATGAGTGAAATTTTCGAGTCCATTAGATGGACACGAAATGCAAA 7084 ||| || ||||| ||||| || || || |||||| ||||||| | | || Sbjct 582 TCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCG 641 Query 7085 ACACACCCAAGAACATGTCACCTCCCTGTGCTATTTGGCTTGGCACAATGGCGAGGAAAA 7144 |||||||||| || || ||||||||| ||||| ||||||||||| |||| | Sbjct 642 CAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGA 701 Query 7145 ATATAATGATTTTCTTAAGAGAATCAGATCAGTACCAGTCGGCAA 7189 |||| | | ||| | | ||| |||||||| ||||| || || Sbjct 702 ATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTGGAAA 746 >seq4303 Length=1160 Score = 87.8 bits (96), Expect = 8e-14 Identities = 188/271 (69%), Gaps = 20/271 (7%) Strand=Plus/Plus Query 4278 CCACTGTATGCCAGTGAAGCTAGGCGTGTCT----TCCAGATGGAAAAGAAGATGAATAA 4333 ||| | || |||| ||||||| ||| |||| || ||| ||| |||| |||| || Sbjct 898 CCATTATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGA--GAAGAGAA--TGAACAA 953 Query 4334 CTACATACAGTTCAAGAGCAAATCAAGGATTGAACCCGTATGTTTATTAATCCATGGGAG 4393 |||||| ||||||||||||||| | |||||||| |||||| | | || || Sbjct 954 CTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTC 1013 Query 4394 TCCTGGTGCTGGAAAGTCTGTGGCAACTTCAATAATTGGCCGTGCAATAGCCGA-GAGTA 4452 || || |||||||||| | || || || |||| || | ||||| || |||| Sbjct 1014 ACCAGGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTA 1073 Query 4453 TTTCAGGGT-CAGTATATTCATTACCACCGGACCC-GACTTTCTTTGATGGGTATAAACA 4510 ||| | || || ||| | ||||| ||||| ||| | ||||| ||||||||||| Sbjct 1074 --TCACTCTAGTGTGTACTCACTTCCACCAGACCCTGACCAT-TTTGACGGGTATAAACA 1130 Query 4511 GCAGGAAGTGGTCA---TAATGGATGACCTG 4538 || ||||||||| | |||||||| ||| Sbjct 1131 GC---AAGTGGTCACAGTTATGGATGATCTG 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23480426301576