Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_004004.1 Length=8134 Score E Sequences producing significant alignments: (Bits) Value seq4083 118 5e-23 >seq4083 Length=3246 Score = 118 bits (130), Expect = 5e-23 Identities = 123/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 4803 CCGCCCGACCCTGACCACTTTGACGGTTACAATCAGCAGACCGTCGTCGTGATGGACGAC 4862 || || ||||| |||||||||||||| ||||| || |||| |||| || ||||||||| Sbjct 2776 CCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGAC 2717 Query 4863 TTGGGCCAAAACCCAGACGGCAAAGAC-TTCAAGTACTTTGCCCAAATGGTATCCACCAC 4921 | |||||||||||||||| |||||| | | || |||| || ||||| ||||| Sbjct 2716 CTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTG-TCAGATGGTCTCCACAGT 2658 Query 4922 GGGGTTCATCCCGCCTATGGCCTCGCTCGAGGATAAGGG 4960 || || || ||||||||||| || || ||||| ||||| Sbjct 2657 GGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGG 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25912304741096