Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_004441.1 Length=7388 Score E Sequences producing significant alignments: (Bits) Value seq4083 327 5e-86 seq4094 257 8e-65 seq1 178 6e-41 seq4303 118 5e-23 seq879 98.7 5e-17 >seq4083 Length=3246 Score = 327 bits (362), Expect = 5e-86 Identities = 1136/1728 (66%), Gaps = 71/1728 (4%) Strand=Plus/Minus Query 5571 GATGAACAAGGGGTATCATTAGAGCTCACACTTGTCACCCTCAAAAGAAATGAGAAATTT 5630 || ||||||||||| |||||||||||||| || || || | | || || |||||| Sbjct 1747 GACGAACAAGGGGTTAACTTAGAGCTCACACTGGTAACGCTTGATACTAACGAAAAATTT 1688 Query 5631 AGAGACATCAGAGCTATGATTCCGGAGAACCCGT-GTGGAACTAATGAGGCAGTTGTTTG 5689 |||||||||| | | || || || ||| | || ||| ||| || | | Sbjct 1687 AGAGACATCACAAGATTCATACCAGA-AACAATTAGTCCTGCTAGTGATGCCACTTTAGT 1629 Query 5690 TGTGAATACCAGCAATTTTCCAAATGCATTTTTGCCAGTTGGCAAAGTGGAGTATTATGG 5749 | | ||||| || | || | | ||| |||||||||| | |||| | ||||| Sbjct 1628 TATAAATACTGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGG 1569 Query 5750 ATATCTTAACCT-AGCAGGAAGTCCAACTCACCGAACCATGATGTACAACTTCCCAACTA 5808 | | | ||||| || | ||| ||| ||||| | || ||||||||||| |||||||| | Sbjct 1568 GTTTTTGAACCTTAGTGGTAAGCCCA-CTCACAGGACTATGATGTACAATTTCCCAACAA 1510 Query 5809 AAGCGGGACAGTGTGGTGGAGTGGTTCTTTCTACAGGGAAAGTGCTAGGTATCCACATTG 5868 |||| |||||||||||||| || || | || |||||| | || |||||||||| Sbjct 1509 AAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTG 1450 Query 5869 GGGGAAACGGTGCACAAGGATTCTGTGCTGCCTTGAAAAGATCGTACTT---CACTAAGC 5925 | || |||||| ||||| ||||| |||||| |||| || ||||| || | | Sbjct 1449 GTGGCAACGGTAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGA-- 1392 Query 5926 CACAAGGCAAGATTGATTGGGTTGAACCC-TCTAAGAAACATGG--GTTTCCAGTGATTA 5982 |||||| |||| | ||| | | ||| | ||||||| ||| | || | || | Sbjct 1391 -ACAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAAC-TGGCAGGTTGAA--CATCA 1336 Query 5983 ATGCACCATCCAAAACCAAACTTGAGCCCAGTGTTTTCTTTGATGTGTTTGAGGGAGTCA 6042 | | ||| | || || ||||| || ||||| || |||||||| || || | Sbjct 1335 ACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTA 1276 Query 6043 AAGAACCAGCTGCTCTTCATCCAAAGGACCCCAGGCTTGAGGTTAACTTGGAAGAAGCAC 6102 |||| ||||| | || | || ||||| ||||| || ||| |||| ||| | || | Sbjct 1275 AAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTC 1216 Query 6103 TCTTTTCCAAATACACTGGTAACGTAGACATTGAGATGCC--AGAGGAAATGAAAGAGGC 6160 | ||||| |||||| || ||| | | | || || ||| | || ||||| Sbjct 1215 TTTTTTCAAAATACGTGGGGAAC--ACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGC 1158 Query 6161 GGTGGATCATTATGCTAATCAGCTTTTGGCACTAGACATACCAACTGAGCCAC-----TT 6215 || |||||||| || || | | ||| | | ||| ||| || |||| | Sbjct 1157 GGCCTTACATTATGCCAACCAAC-TCAAGCAGT-TAGATATCAA--GA-CCACCAAGATG 1103 Query 6216 AGCATGGAGGAAGCCATTTATGGCACGGAAGGCCTTGAAGCTCTGGAT-TTAACAACAAG 6274 ||||||||||| || ||| ||||| || ||| |||||| | ||| || || ||||| Sbjct 1102 AGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC-ACAAG 1044 Query 6275 TGCTGGATACCCTTATGTTACCATGGGGATAAAGAAGAGAGATATTCTAAACAAAGAAAC 6334 ||| ||||| || || | | | || || ||||| | || ||| | | | ||| Sbjct 1043 TGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAAC 984 Query 6335 CAGAGATGTGAAGAAGATGCAAGAGTGCATTGACAAGTATGGATTGAACCT-CCCTATGG 6393 | ||||| | |||||| || | ||| ||||||||||| ||| | || || || Sbjct 983 TCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTC 924 Query 6394 TCACATACATAAAGGATGAACTTAGATCCAAGGAGAAAGTGAAAAAGGGAAAGAGTAGAC 6453 | || || | || ||||||||||| ||| || || | || || || ||| | | | Sbjct 923 T-ACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTC 865 Query 6454 TGATTGAAGCATCCAGTTTAAATGATTCTGTAGCCATGAG-GTGTTATTTTGGCAATTTG 6512 | || ||||| ||| ||||||| || || | |||| || |||| |||| || Sbjct 864 TCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTT- 806 Query 6513 TACAAGGCTTTCCACCAAAACCCAGGCACCCTAACTGGATGCGCTGTTGGATGTGACCCA 6572 || | ||||||||| || ||||| || | || || | |||||||| || ||||| Sbjct 805 TATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCA 746 Query 6573 GATACCTTTTGGAGCAAGATTCCAGTAATGATGGATGGTGAGTTGTTTGGTTTTGATTAC 6632 ||| || ||||||||| | ||| | | | || | | || | ||||| ||| Sbjct 745 GATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTAC 686 Query 6633 ACCGCTTATGATGCCAGCTTGTCTCCACTCA---TGTTTCA-GGCTCTTCAGATGGTTTT 6688 | | ||||| ||| ||||| | || || |||| ||| || |||| || | Sbjct 685 TCGGGGTATGA----CGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCT 630 Query 6689 GGAAAAGATTGGATTCGGAGAGGGAAAGCACTTTAT-TGATA-ACCTGTGCTAT---TCG 6743 | | ||||||| | || | | ||| | | | | ||| | | | || | Sbjct 629 GCGGGAAATTGGATACTCCGAAG--ACGCAGTGTCTCTCATAGAAGGGATCAATCACACC 572 Query 6744 CATCACCTTTTTAGAGACAAGTATTATTTTGTTAAGGGAGGAATGCCATCTGGTTGCTCT 6803 ||||| | | | | || ||||| |||| || |||||||| || |||||||| Sbjct 571 CATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCA 512 Query 6804 GGGACCAGCATTTTTAACTCAATGATAAACAACATCATTATCAGGACAGTTGTACTTCAG 6863 || ||| |||||| ||||| ||||| ||||| |||||||| || ||| | | || | Sbjct 511 GGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAA 452 Query 6864 ACCTACAAGGGGATTGAATTAGATCAACTGAAAATTATAGCGTATGGGGACGATGTCATC 6923 || | ||| ||||| || ||||| ||||||| || | || || ||||| ||||| | Sbjct 451 ACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTG 392 Query 6924 GCCAGTTACCCATACAGAATTGACCCAGCTGAATTGGCCAAAGCTGGGGCAA-AACTA-G 6981 || |||||||| | | ||||||| || ||||| ||| ||||| | || | Sbjct 391 GCTAGTTACCCCTTCCCAATTGACTGTCTGGAGTTGGC--AAGAACAGGCAAGGAGTATG 334 Query 6982 GTCTTCACATGACTCCTCCAGACAAGTCGGAAACCT------ATGTAGATCTAGACTGGA 7035 |||| ||||| ||| | |||||||| | ||| ||| || | || | ||| Sbjct 333 GTCTAACTATGACCCCTGCCGACAAGTC---ACCCTGCTTTAATG-AGGT-TACA-TGGG 280 Query 7036 CGAATGTTACATTTTTAAAAAGAAACTTTGTGCCAGATGAGAAATACCCATTTCTTGTGC 7095 ||||| || || || || ||| || |||| ||| | ||| ||| ||||| | | Sbjct 279 AGAATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCC 220 Query 7096 ATCCGGTTATGCCCATGAAAGAGATTTACGAATCTATCAGGTGGACCAGAGATGCACGCA 7155 | || ||||| |||| |||||| ||||||| || | ||||||| ||||||||| | Sbjct 219 ACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAA 160 Query 7156 ACACACAAGATCATGTGCGTTCTCTGTGCCTGCTTGCATGGCATAATGGCAGAAAAGAGT 7215 || |||||||| ||||| || || ||| | | |||||||| || || | | | |||| Sbjct 159 GTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGT 100 Query 7216 ACGAGGAGTTT-TG-CCGCAAGATCAGATCAGTACCAGTTGGCAGAGC 7261 | || | ||| || ||| ||||||||||| ||| |||| | ||| Sbjct 99 ATGAAAAATTTGTGAGTGCA--ATCAGATCAGTTCCAATTGGAAAAGC 54 Score = 159 bits (176), Expect = 2e-35 Identities = 313/456 (69%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 4281 GAGACCATCTTTGGAAACATTCAGTACCTAGCTCACCACTGCAGGAGATATGCCCCACTT 4340 ||| | || ||||| ||| | ||||| || ||| |||| | | || || || Sbjct 3028 GAGGCGATGTTTGGCAACGTGTCTTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTC 2969 Query 4341 TATGCAGCTGAAGCCAGAAGGGTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAG 4400 ||||| | ||||| | ||||| || ||| ||||||||||||| ||||| ||| Sbjct 2968 TATGCCACGGAAGCAAAGAGGGTGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAG 2909 Query 4401 TTCAAGAGCAAGCAACGGATTGAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACT 4460 ||||||||||| || || ||||| |||||||| || | || ||| | |||| ||| Sbjct 2908 TTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACT 2849 Query 4461 GGAAAATCACTTGCTACATCCATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAA 4520 || || ||| | || ||| || |||| ||| ||||||| | | ||||| Sbjct 2848 GGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGT 2789 Query 4521 GTTTATGCGATTCCTCCAGACAGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTA 4580 || ||| | | ||||||||| ||||| |||||||||||| | || ||| ||| Sbjct 2788 GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACT 2729 Query 4581 GTTATGGATGATCTCAACCAGAACCCGGATGGGAAAGATATGGTTGCT-TTTTGTCAAAT 4639 |||||||| || || ||| ||||| || |||||||| ||| | || |||||||| || Sbjct 2728 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATG-TCACTATTTTGTCAGAT 2670 Query 4640 GGTCTCCACCGTGCCTTACCATGTA---CCTATGGCTGCCATTGAAGAGAAGGGAATGCT 4696 ||||||||| ||| || | || |||||||| | | || ||||||||| | || Sbjct 2669 GGTCTCCACAGTGGATT---TTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGT-CT 2614 Query 4697 CTTTACCAGCTCC---TATGTTTTGGCTTCCACTAA 4729 | || || |||| | ||| | || |||||||| Sbjct 2613 CATT--CACCTCCAAGTTTGTGATTGCCTCCACTAA 2580 >seq4094 Length=3074 Score = 257 bits (284), Expect = 8e-65 Identities = 214/258 (83%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 412 ATGGCGAAAGCCATAGGACGCCTCTTA-GATGACAGGGTGTGAAGAGCCTACTGAGCTGG 470 |||| | || |||||||||| |||| | | |||| |||| |||||| ||| |||||| | Sbjct 1 ATGGGGTAACCCATAGGACG-CTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAG 59 Query 471 GTAGTAGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACCACGGAGCGTCCACCAGCAAT 530 |||| ||||||||||||||||||||||||||||||||| |||||| || |||| Sbjct 60 TTAGTGGTCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAAT 119 Query 531 CCAGCTGGCAGGGCGTCGTAACGGGCAACTCTGTGGCGGAACCGACTACTTTGGGTGTCC 590 |||| || || | ||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 120 CCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCC 179 Query 591 GTGTTTCCTTTTGATCCTATTTTGGCTGCTTATGGTGACAA-CGATAAGTTGTTATCATA 649 |||||||||||| || ||| |||||||||||||||||||| | | |||||||| |||| Sbjct 180 GTGTTTCCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATA 239 Query 650 AAGCTCTTGGGTTGGCCA 667 |||| |||| ||||||| Sbjct 240 TAGCTATTGGATTGGCCA 257 Score = 163 bits (180), Expect = 1e-36 Identities = 269/385 (70%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 1008 CCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAGTGATAGGGTGGCTCAATTGACC 1067 || ||||| || |||||||| ||||| ||||||||||||||| ||||||| ||||| || Sbjct 563 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 622 Query 1068 TTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAACATCACAGTTGCCTATGGTGAA 1127 | || || || |||||||| ||||| ||||| ||||||| ||||| ||||||||| Sbjct 623 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 682 Query 1128 TGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGTAGACAAGACTACCAAACCAGGC 1187 ||||| || |||| || | ||||| || || || ||||| | || |||| Sbjct 683 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 742 Query 1188 GTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGAAA----TGGGAGGCAACTACTA 1242 ||||| ||| |||| || ||||||| |||| | ||| |||||| | | | Sbjct 743 GTTTC-GGTGAATAGGTTTTACACAT----TGGACACAAAATTGTGGGAGAAGTCATCCA 797 Query 1243 AAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAGCTTGGCGTTTTTGGACAGAATT 1302 | || ||| | |||||| | || || | | || || || || ||||| || ||| Sbjct 798 AGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATG 857 Query 1303 GTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATACACGTGCAATGTAATGCCACGA 1362 |||||||| | | | ||| ||| |||| | || |||||||| || ||||| | | Sbjct 858 CACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTA 917 Query 1363 AGTTTCATCAGGGCACATTACTAGT 1387 |||| || || || || | ||||| Sbjct 918 AGTTCCACCAAGGAGCACTCCTAGT 942 >seq1 Length=805 Score = 178 bits (196), Expect = 6e-41 Identities = 339/489 (69%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 6780 GGAGGAATGCCATCTGGTTGCTCTGGGACCAGCATTTTTAACTCAATGATAAACAACATC 6839 || |||||||| || || || ||||| || ||| ||||| |||||||| ||||||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6840 ATTATCAGGACAGTTGTACTTCAGACCTACAAGGGGATTGAATTAGATCAACTGAAAATT 6899 || ||||| || || | | | || | ||||| || || | ||| | |||| || Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 6900 ATAGCGTATGGGGACGATGTCATCGCCAGTTACCCATACAGAATTGACCCAGCTGAATTG 6959 | || |||||||||||||| | || |||||||| | ||||| ||| ||| Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGTTG 447 Query 6960 GCCAAAGCTGGGGCAAA-ACTA-GGTCTTCACATGACTCCTCCAGACAAGTCGGAAACCT 7017 || || || |||||| | || ||| | |||||||||| ||||||| || | ||| Sbjct 448 GCTAAGACT--GGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATC---ACCCT 502 Query 7018 ATGTAGATCTAG--AC-TGGACGAATGTTACATTTTTAAAAAGAAACTTTGTGCCAGATG 7074 | | || || || ||| |||| ||| || | || ||| || ||||||| Sbjct 503 GTTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACC 562 Query 7075 AGAAATACCCATTTCTTGTGCATCCGGTTATGCCCATGAAAGAGATTTACGAATCTATCA 7134 | ||| ||||| | | || || |||||||||| |||||| | ||||| || Sbjct 563 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 622 Query 7135 GGTGGACCAGAGATGCACGCAACACACAAGATCATGTGCGTTCTCTGTGCCTGCTTGCAT 7194 | ||||| | ||| || |||||||| |||||||| ||||| || ||||| ||| | |||| Sbjct 623 GATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCAT 682 Query 7195 GGCATAATGGCAGAAAAGAGTACGAGGAGTTT-TG-CCGCAAGATCAGATCAGTACCAGT 7252 |||| ||||| | | || || ||| ||||| || ||| || |||||||| ||||| Sbjct 683 GGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCA--ATTAGATCAGTTCCAGT 740 Query 7253 TGGCAGAGC 7261 ||| | ||| Sbjct 741 TGGAAAAGC 749 >seq4303 Length=1160 Score = 118 bits (130), Expect = 5e-23 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 4362 GTCTATGCCTTAGAAAAGAGAATTTTAGGATACATACAGTTCAAGAGCAAGCAACGGATT 4421 ||||||| |||| |||||||| ||||| |||||||||||||| || || ||| Sbjct 925 GTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAGTTCAAGAGCAAACACCGTATT 984 Query 4422 GAGCCTGTATGTCTCCTGATTCACGGCACAGCTGGCACTGGAAAATCACTTGCTACATCC 4481 || |||||||||||| | ||| ||| || | ||||||||||| || ||||| || Sbjct 985 GAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACTGGAAAGTCCCTTGCGACCGGT 1044 Query 4482 ATAATTGGAAGAAAGCTAGCAGAATATGAGCACTCAGAAGTTTATGCGATTCCTCCAGAC 4541 || |||| | ||||||| | | ||||| || || | |||| |||||| Sbjct 1045 ATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAGTGTGTACTCACTTCCACCAGAC 1104 Query 4542 AGTGACCATTTTGACGGATACCAGCAGCAGGCCGTGGTAGTTATGGATGATCT 4594 ||||||||||||||| || | ||||| | || ||||||||||||||| Sbjct 1105 CCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCACAGTTATGGATGATCT 1157 >seq879 Length=349 Score = 98.7 bits (108), Expect = 5e-17 Identities = 196/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 3447 ACCACCGCCCATGGTGCTGACAAGCTTGCCAGATGTCACTGCAACACCGGAGTATATTAC 3506 ||||| || || || ||||| | |||| | || | ||| | || ||||| ||||| Sbjct 289 ACCACTGCTCAAGGCTGTGACACGATTGCTCGTTGCAATTGCCAGACAGGAGTGTATTAT 230 Query 3507 TGTAAGTCCAGGAACAAGCACTACCCAGTAACTTTCCAGGGTCCAGGCATCGAT-TGGGT 3565 ||||| || | || || |||||||| || | |||| | || | | ||| | || Sbjct 229 TGTAACTCAATGAGAAAACACTACCCGGTCAGTTTCTCGAAACCCAGTTT-GATCTTCGT 171 Query 3566 CGAGGCTAGTCAGTACTACCCAGCTAGATACCAGACCCATATGCTCCTTGCTTCGGGAAT 3625 ||||| || |||| || ||||||||||||||| | ||| | | ||||| ||| Sbjct 170 GGAGGCCAGCGAGTATTATCCAGCTAGATACCAGTCACATCTCATGCTTGCAGTGGGTCA 111 Query 3626 CTCGGAACCAGGTGACTGTGGTGGTATCCTCAGGTGCCAGCATGGAGTGATCGGTGTTGT 3685 ||||||||||| || || ||||| || || || ||||| ||||| || | || | || Sbjct 110 TTCGGAACCAGGGGATTGCGGTGGCATTCTTAGATGCCAACATGGCGTCGTAGGGATAGT 51 Query 3686 GACTGCTGGGGGCCAGGGAGTGGTTGGATTTGCTGATGTGCGCGACCT 3733 | | ||||| | || |||| || || || |||||| | || || Sbjct 50 TTCCACCGGGGGAAACGGCCTGGTGGGGTTCGCCGATGTGAGGGATCT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23525224062304