Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_004451.1 Length=8126 Score E Sequences producing significant alignments: (Bits) Value seq4083 129 3e-26 >seq4083 Length=3246 Score = 129 bits (142), Expect = 3e-26 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 5215 TACTCATTACCTCCTGACCCCAAATATTTTGATGGATATTCTCAGCAAAATGTGGTTGTA 5274 || || |||||||| ||||| | | ||||| ||||| || || | || ||| Sbjct 2785 TATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTT 2726 Query 5275 ATGGATGATTTAGGTCAAAACCCAGATGGTGAAGACATGTCCCTATTCTGTCAGATGGTT 5334 ||||| || || | ||||||||||| || |||||||||| ||||| ||||||||||| Sbjct 2725 ATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTC 2666 Query 5335 TCCACCACAGCTTTTATACCTCCTATGGCCTCTTTGGAAGAGAAGGGAATGTACTTTACT 5394 ||||| | ||||||||| |||||||| ||| |||| ||||||||| | | || || Sbjct 2665 TCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACC 2606 Query 5395 TCTAATTTTGTTTGTGCCTCTACAAA 5420 || || ||||| |||||| || || Sbjct 2605 TCCAAGTTTGTGATTGCCTCCACTAA 2580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25886706020680