Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_006553.1 Length=8289 Score E Sequences producing significant alignments: (Bits) Value seq1 78.8 5e-11 >seq1 Length=805 Score = 78.8 bits (86), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 7452 GGTGGAATGCCATCAGGGTGCTCGGGAACCTCCATCTTCAATTCAATCATTAATAACATC 7511 ||||||||||| ||||| || || || || |||||||| |||||||| || || |||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 7512 ATTGTGAGAACTCTGGTCTTGGACACCTACAAAGGTATCGATCTCGACCAACTCCGTATT 7571 || | ||||| || | | | || | || || || || || || | | || Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 7572 CTGGCCTACGGTGATGACCTACTGGTGTCCTATCCATTTCCACTTGA---CCCAGAGGCA 7628 ||||||| || || || | |||| || || ||||| |||| || ||| Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAG--- 444 Query 7629 TTAGCAAGGGCTGGAAAGGTGTATGGTCTTAAAATGACACCTGCAGACAA 7678 || || | | |||| || | ||||||| | | ||||| ||||||||||| Sbjct 445 TTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAA 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26408279949156