Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_008714.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq4083 167 1e-37 seq1 120 1e-23 seq4094 105 3e-19 >seq4083 Length=3246 Score = 167 bits (184), Expect = 1e-37 Identities = 931/1463 (64%), Gaps = 53/1463 (4%) Strand=Plus/Minus Query 5768 TGGAAGGCCTACTCATCGCACACTCATGTACAATTTCCCCACGCGAGCTGGACAGTGTGG 5827 ||| | ||| ||||| | || | |||||||||||||| || ||| ||||||||||| Sbjct 1553 TGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGG 1494 Query 5828 CGGAGTAGCCATTTCAATGGGAAAAGTAATAGGGATCCATATTGGAGGCAACGGGGCACA 5887 || || | | | |||| ||||| || |||||||| ||||| |||||||| || Sbjct 1493 TGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCA 1434 Query 5888 GGGCTTCGCAGCAGCTCTACTTCGTAGGTA-TTTTACACAGCCCCAAGGTAAGATTGAGT 5946 || ||| || || || | | || |||| || | | ||||| |||| | | Sbjct 1433 AGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGAAC-AAGGTGAGATCCAAT 1375 Query 5947 TAGTGGAGAAAAGTAAGGAC----GCAGGATATCCTATCATTAATGCACCAACCAAGACC 6002 || || | || || ||||| | | ||| || | ||| || || Sbjct 1374 GGATGAAGCCCAACAAAGAAACTGGCAGGTTG----AACATCAACGGACCTACTCGCACA 1319 Query 6003 AAGCTTTACCCTAGTGTGTTCTTTGATGTTTTCCCCGGTGAAAAAGAACCAGCTGTTCTT 6062 |||||| | || ||||| || ||||| ||| || ||||| ||||| || || Sbjct 1318 AAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTG 1259 Query 6063 CACAAG-AAAGACAAAAGACTTGAAGTTGACTTTGAGGAAGCACTCTTTTCAAAATATAT 6121 || || |||||| ||| || |||||||||||||| | || || ||||||||||| | Sbjct 1258 -ACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGT 1200 Query 6122 TGGCAACA---TTGATAAGCCAGTGACAGAG---GAGATGGAGATAGCCATTGACCATTA 6175 || |||| || || | || | || ||| | | |||| ||| | ||||| Sbjct 1199 GGGGAACACGCTTCATGAACCCG--AC-GAGTTTGTCAAGGAGGCGGCCTTA---CATTA 1146 Query 6176 TGCAAATCAATTGAAGCAACTGAATATTGACCCTACACCAA--TCAGTATGGAGGAAGCC 6233 ||| || ||| | ||||| | |||| | | |||||| | || |||||||| || Sbjct 1145 TGCCAACCAACTCAAGCAGTTAGATATCAAGAC--CACCAAGATGAGCATGGAGGATGCA 1088 Query 6234 ATTTACGGCACTGAAGGGTTAGAGGCCCTTGATCTTGGGACCAGCGCGGGGTACCCCTAT 6293 ||||||||| || | || || | |||||| || || || || || || || Sbjct 1087 TGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATAC 1028 Query 6294 GTGGCTTTAGGAATCAAAAAGAGGGATATACTCAATAAGGAAACAAGAGACACTTCCAAG 6353 || |||| ||||| || | ||| || | || ||| | || |||| Sbjct 1027 AGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAG 968 Query 6354 ATGCAACAATGTATAGAAAAGTATGGACTCAATTTACCAATGGTTACCTATGTGAAGGAC 6413 ||| || | || || |||||||| | || |||| ||| ||||| || || Sbjct 967 ATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGAT 908 Query 6414 GAGCTCCGCTCAAAAGAGAAGGTGAAGAAGGGCAAGAGCCGGCTTATTGAGGCGTCAAGC 6473 || || | | | || ||| | ||||| || ||| || || || || ||| ||| Sbjct 907 GAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGC 848 Query 6474 CTGAATGATTCCGTCGCAATGAGATGTGCTTTTGGAAATCTATACAGGGCATTCCACACC 6533 || ||||| || || ||||| | ||||| | || || || |||||| || Sbjct 847 CTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCC 788 Query 6534 AACCCAGGCACATTGACTGGCTGTGCTGTAGGCTGTAACCCTGAGACATTTTGGAGCAAG 6593 || ||||| ||| | || || | ||||| || || ||||| || || ||||||||| Sbjct 787 AATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAG 728 Query 6594 ATACCAGTAATGATGGATGGGGAGCTATTTGGATTTGATTACACTGCTTATGATGCTAGC 6653 ||||| | | | || ||| || | ||||| ||| | | ||||| ||||| Sbjct 727 TTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGT 668 Query 6654 CTCTCCCCTGTATGGTTTAAGTGTCTCAATTTGCTCCT-CGAGAAGATAGGAT--TTGG- 6709 ||| ||| || ||||| | | || | | |||| || ||| || |||| | | Sbjct 667 CTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAA-ATTGGATACTCCGA 609 Query 6710 ----GCATTGTAAGCACTTCATAGATCAATTATGTTATTCTAATCATCTGTATATGGATA 6765 ||| ||| | || |||||| | | | | ||||| |||| ||| Sbjct 608 AGACGCAGTGT---CTCT-CATAGAAGGGATCAATCACACCCATCATGTGTACCGCAATA 553 Query 6766 AGAGATATGTTGTAGCAGGGGGTATGCCCTCTGGTTGCTCAGGCACCAGTATATTCAATA 6825 | | ||| ||| ||||| |||||||| ||||||||||||||| || ||||| Sbjct 552 AAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACT 493 Query 6826 GCATGATTAACAATCTTATCATTAGGACCCT--TGTTTTAACTGTTTACAAAAATATTGA 6883 ||||| |||||| | || ||||| || || || || || || |||| || || Sbjct 492 CGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATT--CAAAGGGATAGA 435 Query 6884 CTTGGATGACCTGAAGATTATAGCCTATGGTGATGACGTTATTGCCTCATACCCATTTGA 6943 | ||||| ||||| || | ||||| || ||||| || | || ||||| || Sbjct 434 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCC 375 Query 6944 GCTTGAC-GCCA--AGTTGCTCGCGGATGCGGGCAAGAGCTTTGGCCTAATCATGACACC 7000 ||||| | | ||||| | | | | |||||| | ||| |||| ||||| || Sbjct 374 AATTGACTGTCTGGAGTTGG-CAAGAA--CAGGCAAGGAGTATGGTCTAACTATGACCCC 318 Query 7001 TCCAGACAAGAG-CAGTGAGTTTGTAAAATTGACCTGGGACAATGTTACTTTTTTGAAGA 7059 | | |||||| | || || | | || || ||||| |||| ||||| ||||||| Sbjct 317 TGCCGACAAGTCACCCTGCTTTAATGAGGTT-ACATGGGAGAATGCCACTTTCTTGAAGA 259 Query 7060 GATCATTTGTTAAGGACGAACGCTTCCCATTTTTGATTCATCCGGCCATGAAAATGACAG 7119 || ||| | || | | ||||| ||| | || || || | ||| ||||| | Sbjct 258 GAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGG 199 Query 7120 ACATTCATGAATCCATTCGTTGGACCAAGGACGCAAAATCCACCCAGGACCATGTGAGAT 7179 | ||||| |||||||||||||||||||| || ||| | || || || || ||| | | Sbjct 198 AGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCT 139 Query 7180 CACTGTGCCTATTGGCTTGGCAC 7202 | || ||| |||| || |||||| Sbjct 138 CCCTCTGCTTATTAGCATGGCAC 116 Score = 129 bits (142), Expect = 3e-26 Identities = 432/670 (64%), Gaps = 2/670 (0%) Strand=Plus/Minus Query 4064 TGACAGTTGGATAAAGAAGTTTACTGAGGCAGTTAATGCCTTCAAGGGACTAGATTGGAT 4123 |||| |||| |||||||||| | || || | | |||| ||||| || || ||||| Sbjct 3245 TGACTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGAT 3186 Query 4124 AGCAGCTAAATTCAGTAAATTTCTTGATTGGATCAAGTCAAAGATCATCCCTGAACTTAA 4183 | ||| ||||||||||| | |||||| ||||| || ||||| || | ||| Sbjct 3185 CTCCAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAA 3126 Query 4184 GGAGAGAACTGAGTTTTTGAAAAACCTGAGGCAACTACCACTCCTTGAGGCTCAAATTGC 4243 |||| | |||||| | || || || | |||||| || | | ||| |||||| | Sbjct 3125 AGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTC 3066 Query 4244 AACACTGGAACACTCCAACCCCACCCAAGAGACTCAAGAGATCCTGTTCTCAAATGTCCA 4303 | || ||||| || | | || ||| | ||| |||| || || Sbjct 3065 TAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTC 3006 Query 4304 GTACCTTGCTCACCATTGCAGGAAGAATGCA-CCTTTATATGCCGCGGAGGCTCGCCGAG 4362 ||||| || ||| ||| | || | | || || | |||||| |||| || | | Sbjct 3005 TTACCTGGCCCACTTCTGCCGCAA-ATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGG 2947 Query 4363 TCTTTGCGCTTGAGAAACGTGTGTTGGGCGCAATGCAGTTCAAGACCAAGAATCGAATTG 4422 | | || || || || | || ||||||||||||| ||| | || |||| Sbjct 2946 TGTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTG 2887 Query 4423 AACCTGTTTGCTGCCTAATCCATGGTTCTCCTGGCACAGGTAAGTCACTTGCTACATCAA 4482 ||||||| ||| | ||| || || ||||| || || |||||| | || ||| | Sbjct 2886 AACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGA 2827 Query 4483 TCATTGGCAGAAGAATAGCTGAATATGAGAACAGTGGGGTATATAGTCTTCCACCCGACC 4542 | |||| ||| ||||| || | | || | || ||| | || || |||| Sbjct 2826 TTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACC 2767 Query 4543 CAAACCACTTTGACGGTTACCAAGAACAGGCTGTTGTTGTAATGGATGATCTACTCCAAA 4602 || ||||||||||||| ||| || ||||| || ||| ||||| || ||| ||||| Sbjct 2766 CAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAA 2707 Query 4603 ACCCAGATGGTAAGGACATGAGCTTATTTTGTCAAATGGTTTCCACCGTCCCTTTCGTTG 4662 ||||||| || || |||||| |||||||||| ||||| ||||| || ||| | Sbjct 2706 ACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATAC 2647 Query 4663 TTCCTATGGCTGCACTTGAAGACAAAGGTAGGTTGTTCACATCAAAGTACGTGTTGGCTT 4722 |||||||| | || || || || || | ||||| || |||| ||| | || | Sbjct 2646 CGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCCT 2587 Query 4723 CAACCAACGC 4732 | || ||||| Sbjct 2586 CCACTAACGC 2577 >seq1 Length=805 Score = 120 bits (132), Expect = 1e-23 Identities = 328/491 (67%), Gaps = 16/491 (3%) Strand=Plus/Plus Query 6750 CATCTGTATATGGATAAGAGATATGTTGTAGCAGGGGGTATGCCCTCTGGTTGCTCAGGC 6809 ||| ||||| | | || | ||| |||| || || |||||||| || || || || Sbjct 235 CATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATGCCCTCAGGATGTTCTGGT 294 Query 6810 ACCAGTATATTCAATAGCATGATTAACAATCTTATCATTAGGACCCTTGTTTT---AACT 6866 || || || ||| ||||| ||||| | ||||| || |||||| | | |||| Sbjct 295 ACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGAACCCTTTTGATCAAAACT 354 Query 6867 GTTTACAAAAATATTGACTTGGATGACCTGAAGATTATAGCCTATGGTGATGACGTTATT 6926 |||| |||| ||| ||||||| |||| || | |||||||| || || || | Sbjct 355 -TTTAAGGGAATA--GACCTGGATGAGTTGAACATGGTGGCCTATGGGGACGATGTGCTG 411 Query 6927 GCCTCATACCCATTTGAGCTTGAC-GCCA--AGTTGCTCGCGGATGCGGGCAA-GAGCTT 6982 || ||||| ||| |||| ||| ||||| || | | ||||| ||| | Sbjct 412 GCTAGTTACCCCTTTCCCATTGATTGCCTTGAGTTG---GCTAAGACTGGCAAAGAG-TA 467 Query 6983 TGGCCTAATCATGACACCTCCAGACAAGAGCAGTGAGTTTGTAA-AATTGACCTGGGACA 7041 ||| | | |||||| ||| ||||||| | || |||| | || | || ||||| | Sbjct 468 TGGTTTGACCATGACTCCTGCAGACAA-ATCACCCTGTTTCAATGAAGTAACATGGGAAA 526 Query 7042 ATGTTACTTTTTTGAAGAGATCATTTGTTAAGGACGAACGCTTCCCATTTTTGATTCATC 7101 ||| ||| || |||||||| ||| | ||| | | || ||||| || ||||| | Sbjct 527 ATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCAATTTCCATTCTTAATTCACC 586 Query 7102 CGGCCATGAAAATGACAGACATTCATGAATCCATTCGTTGGACCAAGGACGCAAAATCCA 7161 | | ||| |||| ||| || |||||||||||||| ||||| || ||||| || Sbjct 587 CTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGACTAAAGACGCGCGCAACA 646 Query 7162 CCCAGGACCATGTGAGATCACTGTGCCTATTGGCTTGGCACTGTGGAGAGAAACAATATG 7221 |||| || || ||| | || ||||| || ||||| |||||| ||| || | |||||| Sbjct 647 CCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAATGGTAAGGATGAATATG 706 Query 7222 AAGAGTTTCTG 7232 | ||||| || Sbjct 707 AGAAGTTTGTG 717 >seq4094 Length=3074 Score = 105 bits (116), Expect = 3e-19 Identities = 299/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 945 AAGCAAGACCTTACGCAAGACCCCGAAAAATTTACCCGCCCTGTGGTAGATATGATGAAG 1004 ||||| ||||| ||| ||||| || || ||| | ||||| ||| || | | Sbjct 491 AAGCAGAGCCTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACT 550 Query 1005 GAAGCTGCAGTGCCGCTGAAAAGTCCATCTGCCGAAGCTTGTGGCTATAGCGATAGAGTC 1064 ||| |||| ||| | ||| ||||||||| || || ||||| || || ||| | || Sbjct 551 GAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTG 610 Query 1065 GCCCAATTGACGCTCGGCAACTCGACCATTACCACACAAGAAGCTGCAAATATCGTTGTG 1124 || ||||| || | ||||| || ||||| || || |||||||| ||||| ||| | || Sbjct 611 GCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTT 670 Query 1125 GCATATGGAAGGTGGCCGTCCAACCTGAGAGACACCGATGCCACTGCTGTTGATAAGCCC 1184 | ||||| |||||| ||| || ||| | ||||||||||| || || || || Sbjct 671 GGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCA 730 Query 1185 ACCCAACCCGGTGTGTCAGCAGAGCGCTTCTACACTTT--ACCATCTGTTCAGTGGACTA 1242 || | || | ||| || | | | || ||||| || || || |||| | Sbjct 731 ACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATT--GTGGGAGA 788 Query 1243 CTACCTTCAAGGGCCATTACTGGAAACTACCTGACGCCCTGTCTGAATTGGGACTTTTTG 1302 | | |||||| ||||||||| | || || | | ||||| || | |||| Sbjct 789 AGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTG 848 Query 1303 GCCAAAATCTTCAATTCCATTATCTCTA-CAGAGGTGGATGGGCAATCCACGTTCAGTGT 1361 | |||||| || ||||| || ||||| | | || | || || ||||| ||||| Sbjct 849 GTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTGCAGTGC 907 Query 1362 AATGCAACCAAATTCCACCAGGGTACGCTCCTCGT 1396 ||||| | || |||||||| || | ||||| || Sbjct 908 AATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGT 942 Score = 78.8 bits (86), Expect = 4e-11 Identities = 136/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 2076 TATTATACACAATGGTCTGGATCACTTGAATTCACCTTTATGTTTTGTGGGACATTCATG 2135 || || || |||||||| |||||||| ||| ||||||| ||||| ||| | || ||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2136 ACAACTGGAAAGGTTATTATAGCCTATACGCCACCCGGAGGTGATCAACCGGAGAGCAGG 2195 | || || ||| | | ||||| || || ||||| ||||| ||| || | || Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCGG 1809 Query 2196 CAGCAGGCCATGCTTGGAACACATGTCGTGTGGGACTTTGGCTTACAATCCTCCATTACT 2255 | |||||| | || || || ||| | ||||||||||| | ||||| || | || Sbjct 1810 GCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCACC 1869 Query 2256 CTCGTGGTCCCTTGGATC 2273 || || | || |||||| Sbjct 1870 CTTGTAATACCATGGATC 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23531623742408