Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_009996.1 Length=7099 Score E Sequences producing significant alignments: (Bits) Value seq4094 141 4e-30 seq4083 91.5 7e-15 >seq4094 Length=3074 Score = 141 bits (156), Expect = 4e-30 Identities = 148/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 403 GACAAGGTGTGAAGAGTCTCGTGTGCTCCACGTAGAATCCTTCCGGCCCCTGAATGTGGC 462 |||| |||| ||||||||| || ||| | ||| | ||||||||||||||| ||| Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCT--AGTTAGTGGTCCTCCGGCCCCTGAATGCGGC 88 Query 463 TAATCCTAACCCCGCAGCTATTGCACACAATCCAGTGTGTTGATAGTCGTAATGGGCAAC 522 |||||||||| || ||| ||| |||||||| | || | ||||||||||||||| Sbjct 89 TAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAAC 148 Query 523 TGTGGGATGGAACCAACTACTTTGGGTGTCCGTGTTTCCTGTT-TTCTTTAAATACTTGC 581 | || |||||| ||||||||||||||||||||||||| || ||||| | | ||| Sbjct 149 TCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTGC 208 Query 582 TTATGGTGACAA 593 |||||||||||| Sbjct 209 TTATGGTGACAA 220 >seq4083 Length=3246 Score = 91.5 bits (100), Expect = 7e-15 Identities = 189/276 (68%), Gaps = 18/276 (7%) Strand=Plus/Minus Query 4203 TGAACCAGTATGCATACTGATCAGAGGAGCTCCTGGGTGTGGGAAATCTTTGGTTACTTC 4262 |||||| |||||| || | |||||||| | ||||| |||||| || |||| || Sbjct 2888 TGAACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGG 2829 Query 4263 AATAATAGCCAGAGGTTTAAC---CAA--ACCAG----GTGACATTTACTCCCTTCCTCC 4313 || || || |||| || | ||| |||| ||| | || ||| | ||||| Sbjct 2828 GATTATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTG---TGTATTCCTTACCTCC 2772 Query 4314 AGACCCTAAACATTTTGATGGGTATGATCAACAAGAAGTGGTAA---TTATGGATGATCT 4370 |||||| | || ||||| || || | ||||| || | || | ||||||| || || Sbjct 2771 AGACCCAGACCACTTTGACGGATACAAACAACA-GA--TCGTCACTGTTATGGACGACCT 2715 Query 4371 GGGCCAAAACCCTGATGGTAAGGACCTTTCTATGTTCTGTCAGATGGTGTCAACCACTAA 4430 |||||||||| || || || ||| | || | || ||||||||||| || || | Sbjct 2714 ATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGA 2655 Query 4431 TTTCATTCCCCCAATGGCAGCTCTGGAAGATAAGGG 4466 ||| || || || |||||| ||||||| || ||||| Sbjct 2654 TTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGG 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22600470287276