Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_010354.1 Length=7556 Score E Sequences producing significant alignments: (Bits) Value seq4083 82.4 4e-12 >seq4083 Length=3246 Score = 82.4 bits (90), Expect = 4e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 4431 CCTCCAGATCCTGACCACTTTGACGGGTACAGAGGTCAAAAAGTCGTTATTATGGACGAT 4490 |||||||| || |||||||||||||| |||| | || | ||| | |||||||||| Sbjct 2776 CCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGAC 2717 Query 4491 CTTGGACAGAACCCCGATGGCACAGAC-TTCAAGTACTTTGCTCAAATGGTTTCTACCAC 4549 || | || ||||| || || | |||| | | || |||| ||| ||||| || || Sbjct 2716 CTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTG-TCAGATGGTCTCCACAGT 2658 Query 4550 AGCTTTCATACCACCGATGGCAGCCCTGGAGGACAAAGG 4588 | ||| ||||| || |||||| | |||||||| || || Sbjct 2657 GGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGG 2619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24062797191040