Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_010415.1 Length=7351 Score E Sequences producing significant alignments: (Bits) Value seq4094 421 3e-114 seq4083 347 6e-92 seq1 250 1e-62 seq4303 123 1e-24 seq879 98.7 5e-17 seq1891 84.2 1e-12 >seq4094 Length=3074 Score = 421 bits (466), Expect = 3e-114 Identities = 648/921 (70%), Gaps = 55/921 (6%) Strand=Plus/Plus Query 400 GGACGCTCGTTTGTGGACATGGTGTGAAGAGCCTACTGAGCTAGAGGGTAGTCCTCCGGC 459 |||||||| || |||||||||| |||||| ||| |||||||| || |||||||||| Sbjct 16 GGACGCTCTAATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGC 75 Query 460 CCCTGAATGCGGATAATCCTAACCCCGGAGCACCCACACTCAATCCAGAGTGCAGGATGT 519 |||||||||||| |||||||||| |||||||| | ||||||||||| | || ||| Sbjct 76 CCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGT 135 Query 520 CGTAACGCGTAAGTCTGGGACGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTAC 579 ||||| | | || |||| ||||||||||||||||||||||||||||||||| || | | Sbjct 136 CGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTC 195 Query 580 TTACTTTGGCTGCTTATGGTGACAATC-TAGTGTTGTTACCATATAGCTATTGGATTGGC 638 ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 196 TTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGC 255 Query 639 CATCCGGTGT---------------------TTTGAATTG--TGTGT----TTAT-ACT- 669 |||||||||| | | |||| | ||| |||| ||| Sbjct 256 CATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCATTATCACTG 315 Query 670 AATTCTTTTA-CA-TATCA-----------------CAGACAACCAAATATGGGAGCTCA 710 || ||| | | || | ||| | |||| |||| ||||| | || Sbjct 316 AAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACATGGGCTCACA 375 Query 711 AGTATCAAGACAACAAACTGGCTCACATGAGACAAGTAATATTGCAACCAATGGTAGTAC 770 || || | ||||| | || ||||| || | ||| || ||| | ||| || Sbjct 376 GGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTACCGAGGGTTCCAC 435 Query 771 ACTACATTATACAAACATCAACTACTATAATGATTCATATGCGGCTAGTGCAGCAAAACA 830 || | ||||| | ||| || |||||||| ||||| ||||| || | |||| || || Sbjct 436 TATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGCAGGTAAGCA 495 Query 831 GGATTTCACTCAAGATCCCGGCAAGTTCACACAACCTGTCGCAGATGTTTTAAAGCAAAC 890 | | | || || || | |||||| || | |||||| ||| | || | ||| Sbjct 496 GAGCCTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAAT 555 Query 891 CGCTGTTCCATTAAAGTCACCCAGTGCTGAAGCTTGCGGTTATAGTGACAGGGTGGCGCA 950 || | |||||||| || || |||||| || || ||||| ||||| ||||||| || Sbjct 556 GGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACA 615 Query 951 GCTAAAACTGGGCAATACCTCCATAACCACTCAAGAAGCTGCAAATATCACTGTAGGATA 1010 ||| | |||||| | |||| || || |||||||| ||||| |||| || || || Sbjct 616 ATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTA 675 Query 1011 TGGTGAGTGGCCTACTT--TTCTCAGTAACGTTGATGCCAATGCAGTAGATGCACCAACA 1068 ||||||||||||| | | | || | || |||||||| |||||| || |||||| Sbjct 676 TGGTGAGTGGCCTTCCTACTGTTCGG--ACTCTGATGCCACTGCAGTGGACAAACCAACG 733 Query 1069 CACCCCGATGTGTCAGTAAATCGCTTTTACACCTTGAAAGCTGTAARGTGGGAGAAAACC 1128 | ||| ||||| || || ||| | |||||||| ||| | | | ||||||||| | Sbjct 734 CGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCA 793 Query 1129 TCCACAGGATGGTATTGGAAGTTACCAGACTGT-TTGAATCAACTTGGTGTGTTTGGCCA 1187 |||| || ||||| ||||| || || || ||| || | | || || || ||||| || Sbjct 794 TCCAAGGGGTGGTACTGGAAATTCCCGGA-TGTGTTAACTGAAACCGGGGTCTTTGGTCA 852 Query 1188 AAATGCTCAATATCACTACCTGTATAGGTCAGGGTTTGCCGTACATGTGCAGTGCAATGC 1247 |||||| || | |||||||| ||| |||||||||| | | || |||||||||||||| Sbjct 853 AAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGC 912 Query 1248 CAGCAAGTTTCACCAGGGGGC 1268 || ||||| ||||| || || Sbjct 913 TAGTAAGTTCCACCAAGGAGC 933 Score = 145 bits (160), Expect = 4e-31 Identities = 279/406 (69%), Gaps = 8/406 (2%) Strand=Plus/Plus Query 1434 CCCACACCAATGGATAAATTTAAGGACCAACAACTGTGCTACCATAGTGCTGCCGTACGT 1493 |||||| || ||||| ||||| ||||||||||| ||||| || ||| | |||||||| | Sbjct 1105 CCCACATCAGTGGATTAATTTGAGGACCAACAATTGTGCCACAATAATAGTGCCGTACAT 1164 Query 1494 TAATAACGTCCCAAGTGATTGTGCCTTGAAGCACAATAA--TTGGACATTAGCT-GTCAT 1550 || | || ||||| ||||||||| || ||| |||| | ||| || | Sbjct 1165 AAACGCACTACCCTTTGATTCTGCCTTGAACCATTGTAACTTTGG---TCTGCTGGTTGT 1221 Query 1551 ACCAATTAGCCCATTAAATTATGATGCAGGGGCCACTCCTCTTGTTCCAATTACCATCAC 1610 || |||||||| ||| ||||||| ||| || || || | | || ||||| ||||| Sbjct 1222 GCCTATTAGCCCGTTAGATTATGACCAAGGTGCGACGCCAGTGATCCCCATTACTATCAC 1281 Query 1611 CATCGCTCCCATGGCATGCGAGTTTTCAGGTCTACGAAAGGCAATCTCCCAAGGGTTGCC 1670 | || || ||| | || ||| |||| || || | ||| | | |||||||| || Sbjct 1282 TTTGGCCCCAATGTGTTCTGAATTTGCAGGCCTTAGACAAGCAGTTACGCAAGGGTTTCC 1341 Query 1671 AGCCCAACTGACCCCAGGTTCCACTCAGTTTGTAACAACGGACAATGACAGTTC-CCAGC 1729 | | |||| || || | | || ||| |||| || ||| ||| | || || | Sbjct 1342 TACTGAGCTGAAGCCTGGCACAAACCAATTTTTAACCACTGACGATGGCGTCTCAGCACC 1401 Query 1730 CATTAATCCCAAACTTTGATGAGACCACACCAATCCACATACCTGGAGAAGTGAGAAACA 1789 |||| | ||||||||| | ||| | ||||| ||||| || ||||| |||||| Sbjct 1402 CATT-CTGCCAAACTTTCACCCCACCCCGTGTATCCATATACCCGGTGAAGTTAGAAACT 1460 Query 1790 TGCTGGAGATATGTCAGGTGGAGAGCATCCTTGAGGTAAATAATGT 1835 |||| ||| |||| |||||||||| ||| | ||||| || ||||| Sbjct 1461 TGCTAGAGCTATGCCAGGTGGAGACCATTTTAGAGGTCAACAATGT 1506 Score = 105 bits (116), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 1975 TATTACAACCAATGGTCTGGTAGCCTAGAAATAACATTCATGTTCACTGGATCCTTCATG 2034 || |||| ||||||||| || || ||| | || ||||||||||| || ||||| ||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2035 GCAACAGGAAAGATACTTATTGGTTACTCACCACCCGGGGGATCTCAACCC--GCAACTC 2092 || || || ||||| || || | ||| ||||||| || || | |||| | | | Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCGG 1809 Query 2093 GTGAAGATGCCATGTTGGGCACGTATGTTGTTTGGGACTTTGGACTCCAATCTTCAGTGA 2152 | || ||||||||||||||| | || | ||||||||||| || ||||| || || | Sbjct 1810 GCGA--CCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCA 1867 Query 2153 CTCTGGCGATCCCATGGATTAGTAAC 2178 | || | || |||||||| || ||| Sbjct 1868 CCCTTGTAATACCATGGATCAGCAAC 1893 >seq4083 Length=3246 Score = 347 bits (384), Expect = 6e-92 Identities = 1012/1534 (66%), Gaps = 66/1534 (4%) Strand=Plus/Minus Query 5669 AGTATGGTTTCTTGAACCTCAGTGGTACTCCAACCCACAGAATGCTCATGTATAATTTTC 5728 ||||||| || |||||||| ||||||| || || ||||| | | ||||| ||||| | Sbjct 1575 AGTATGGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCC 1516 Query 5729 CCACTAAATCAGGGCAATGTGGTGGAGTGTTGATGGCAACTGGTAAAGTCATAGGTATTC 5788 | || ||| |||| || |||||||| || ||| || |||||||| || || || | Sbjct 1515 CAACAAAAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCC 1456 Query 5789 ACGTTGGTGGTAATGGACATCAAGGATT-TGCTGCCACACTACTCAGAGACTACTTCAAT 5847 || ||||||| || || ||||| || ||| || | || || | ||||| | Sbjct 1455 ACATTGGTGGCAACGGTAGGCAAGGTTTCTGC-GCTGCCCTGAAGAGGGGATACTTT--T 1399 Query 5848 GAAG--AACAAGGTGAAATTGAGTGGATGGAGACAAACAAAGAATC----AGGTTACCCA 5901 | || |||||||||| || | |||||| || | ||||||||| | ||||| || Sbjct 1398 GCAGTGAACAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACA 1339 Query 5902 ATTATCAATGCACCAACTAAAACAAAGTTAGAACCTAGTGTGTTTCATGACATTTTCCCC 5961 |||| | ||| ||| |||||| | ||||| ||||| ||||| || | ||| Sbjct 1338 ----TCAACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAA 1283 Query 5962 GGTGTTAAGGAACCAGCAGTTTTAAACAAAAATGATCCCAGACTTAAGGTTGACTTTGAG 6021 || ||| || |||||||| | | | || || || || || | ||||||||||| Sbjct 1282 GGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAA 1223 Query 6022 GAGGCGATCTTTTCCAAGTACGTGGGTAATGTGAACAC---TCATGTA---GATGAATAC 6075 |||| | ||||| || |||||||| |||||| ||||| | || || | Sbjct 1222 CAGGCTCTTTTTTCAAAATACGTGGG------GAACACGCTTCATGAACCCGACGAGTTT 1169 Query 6076 ATGCAGGAAGCTATTGACCACTATGCTGGGCAATTAATGACCCTTGACATTGACATTAGT 6135 | |||| || || ||||| ||| | | | | || || | | | Sbjct 1168 GTCAAGGAGGCGGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACCACC 1109 Query 6136 GAGATGTGCCTTGAGGATGCTGTTTATGGGACTGAAGGGCTTGAAGCACTTGACCTGACA 6195 ||||| || | |||||||| ||| || || || || ||||| | || || Sbjct 1108 AAGATGAGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCAC 1049 Query 6196 ACTAGTGCAGGATACCCTTAT-GTGACAATGGGAATCAAAAAGAGAGACATATT--ATCA 6252 || ||||||||||| || || ||| || | || ||||| || | ||||| || ||| Sbjct 1048 ACAAGTGCAGGATATCCATACAGTG-CACTAGGCATCAAGAAAAAGGACATTTTGGATCC 990 Query 6253 AAGAAAACTAGAGACTTATCCAAGTTAAAAGAGTGCATGGATAAATATGGTCTCAACCTA 6312 || || || | || | |||| | ||| | |||||| || ||||| | | ||| Sbjct 989 AACAA--CTCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTA 932 Query 6313 CCAATGGTGACATATGTGAAGGATGAGTTGAGAAGCAGGGAGAAAGTTGAGCAAGGGAAA 6372 || || ||||| || ||||| | || || || || | || ||||||| Sbjct 931 CCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAG 872 Query 6373 TCTCGCTTGATTGAAGCTTCCAGTCTCAATGATTCTGTAGCAATGAGACAATGT--TTTG 6430 ||||| | || ||||| ||| || ||||| || || ||||| ||| |||| Sbjct 871 TCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGA--ATGACATTTG 814 Query 6431 GGAATCTTTATAAGACATTCCACCGGAACCCAGGAACGGTTACTGGTAGTGCAGTGGGCT 6490 || | |||||| | | |||||| || ||||| || | || ||| || || || | Sbjct 813 GGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGT 754 Query 6491 GCAACCCAGACACATTTTGGAGTAAAATTCCAGTGATGTTGGACGGTGAGCTCTTTGCAT 6550 |||||||||| || ||||| || | ||| | | | || ||| || || | Sbjct 753 GCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGT 694 Query 6551 TTGATTACACTGGTTATGATGCTAGCTTGAGCCCTGTTTGGTTCGCGTGTCT-----TAG 6605 |||| ||| | || ||||| ||||| | ||||| || |||||| | || ||| Sbjct 693 TTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAG 634 Query 6606 CCGTGTGCTTGAAAAATTAGGTTATGATTACAAGGCTGGCAGGTACATTTCGTACTTGTG 6665 | || | ||||| | || | ||| | |||| | | || || | | Sbjct 633 TCCTGCGGG----AAATTGG---ATACTCCGAAGAC--GCAGTGTC-TCTCATAGAAGGG 584 Query 6666 -TCACTCATACC----ACCTTTACAAAAACAAGCACTATTTTGTGCGAGGTGGTATGCCT 6720 ||| ||| ||| | | ||| || || |||| ||| | || || ||||| Sbjct 583 ATCAATCACACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCC 524 Query 6721 TCAGGGTGTTCTGGTACATCAATCTTCAACTCCATGATAAACAACATCATAATTCGAACA 6780 ||||| || || || || || || |||||||| ||||| ||||| ||||| ||| ||||| Sbjct 523 TCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACA 464 Query 6781 TTGTTGTTAAAAACTTACAAAAACATTGATTTGGATAAGTTCAAGATGATTGCATATGGA 6840 | || | ||||| | |||| || ||| | ||| | | || ||| | || || || Sbjct 463 CTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGG 404 Query 6841 GATGATGTGATTGCTAGCTACCCCTACCCAATTGATGCAGGTCT--ACTTGCTAAGG-CG 6897 ||||||||| | ||||| ||||||| ||||||||| |||| | ||| ||| | Sbjct 403 GATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACT---GTCTGGAGTTGGCAAGAACA 347 Query 6898 GGGAAGGAGTATGGCCTGACAATGACTCCTGCTGACAAATCTAAGGAGTTTAACAACGTG 6957 || ||||||||||| || || ||||| ||||| ||||| || ||||| | || Sbjct 346 GGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTT 287 Query 6958 ACATGGGAGAATGTCACTTTCCTTAAGCG-GTACTTTCGTGCC-GATGAACAGTACCCCT 7015 ||||||||||||| ||||||| | ||| | | | ||| |||| ||| | || | ||| | Sbjct 286 ACATGGGAGAATGCCACTTTCTTGAAGAGAGGA--TTCTTGCCTGATCATCAATTCCCGT 229 Query 7016 TCCTGGTCCACCCTGTGATGCCAATGAAGGAGATACATGAGTCCATTAGATGGACAAAAG 7075 | || |||||||| ||||||||||| |||||| || || |||||| | ||||| |||| Sbjct 228 TTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAG 169 Query 7076 ATGCAAAAAACACACAGGAACATGTAAGATCACTGTGCGAATTGGCATGGCACAATGGTC 7135 ||||| || || || || || || | || || ||| ||| ||||||||||| || Sbjct 168 ATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGA 109 Query 7136 AAGAGGTTTATGAAGAATTTTTGAGTAAAATTAG 7169 |||||| |||||| ||||| ||||| ||| || Sbjct 108 AAGAGGAGTATGAAAAATTTGTGAGTGCAATCAG 75 Score = 239 bits (264), Expect = 2e-59 Identities = 477/703 (68%), Gaps = 8/703 (1%) Strand=Plus/Minus Query 4000 GATTCATGGCTGAAGAAATTTACAGAAGCCACAAACGCTGCAAAAGGCCTAGAATGGATT 4059 || || ||| | ||||| || | || || | | || || || || || || ||||| Sbjct 3244 GACTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATC 3185 Query 4060 GCCCAAAAGATTAGTAAATTCATTGATTGGTTGAAAACCAAAATAGTGCCTGAGGTGAAG 4119 || | || || |||||||| || |||||| | || ||||| | || | | || Sbjct 3184 TCCAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAA 3125 Query 4120 GAAAAAGTCGAATTCCTTGGAAAACTCAAACAACTACCCCTACTCGAAAGTCAGATTACC 4179 || |||||||| || || || || || ||||| ||| || | || | || ||| | Sbjct 3124 GAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTCT 3065 Query 4180 AGCATTGAGCATAGTGCACCCAGTCAGGATGATCAAGAAAGACTTTTTGGAAATGTTCAA 4239 | | || || ||| | ||||| || | || | ||||| || || Sbjct 3064 AATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCT 3005 Query 4240 TACCTGGCTCACTACTGTAGGAGGTACGCACCGCTGTATGCGGCAGAAGCAAGAAGGGTG 4299 |||||||| |||| ||| | | | | ||| || ||||| | ||||||| |||||| Sbjct 3004 TACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTG 2945 Query 4300 TTCACTTTGGAAAAGAAGATGAGCAATTACATGCAGTTCAAGACCAAATCCCGCATTGAA 4359 | | | | ||||||| |||| ||||||||||||||||||| |||| ||| |||||| Sbjct 2944 TACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGAA 2885 Query 4360 CCTGTATGTTTGCTGATACACGGAACCCCCGGAGCAGGAAAGTCAGTGGCCTCAAGCCTC 4419 |||||||| | | || || | || || | || |||||| |||| || | | Sbjct 2884 CCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATT 2825 Query 4420 ATTGGGCGTGCCATCGCTGAGAAATTGAATAGCTGTGTGTATTCTCTACCACCAGACCCT 4479 |||| | ||||| || || || | | | |||||||||| |||| |||||||| Sbjct 2824 ATTGCTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACCCA 2765 Query 4480 GACCACTTTGATGGTTACAAACAGCAAGCTGTCGTCA---TCATGGACGATTTATGTCAG 4536 ||||||||||| || |||||||| || |||||| | |||||||| |||| || Sbjct 2764 GACCACTTTGACGGATACAAACAACAGA---TCGTCACTGTTATGGACGACCTATGCCAA 2708 Query 4537 AACCCAGATGGGAAAGATGTGAGCTTGCTATGTCAGATGGTTTCCACAGTGGATTTTATT 4596 |||||||| |||||||| || | | ||||||||||| ||||||||||||||||| Sbjct 2707 AACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATA 2648 Query 4597 CCACCTATGGCTAGCT-TAGAGGAAAAGGGAATTCTATATACTTCCCCTTTCATGATTGC 4655 || |||||||| | || | ||||| |||||| | || || ||| || ||||||| Sbjct 2647 CCGCCTATGGC-ATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGC 2589 Query 4656 ATCTACTAACCATGGTTCCATCACTGCTCCAACCATCTCGGAT 4698 || |||||| || ||||| | ||||| |||||||| Sbjct 2588 CTCCACTAACGCCAGTAACATCATAGTGCCAACAGTCTCGGAT 2546 >seq1 Length=805 Score = 250 bits (276), Expect = 1e-62 Identities = 350/481 (73%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 6709 GGTGGTATGCCTTCAGGGTGTTCTGGTACATCAATCTTCAACTCCATGATAAACAACATC 6768 ||||| ||||| ||||| ||||||||||| || ||||| || || ||||| ||||||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6769 ATAATTCGAACATTGTTGTTAAAAACTTACAAAAACATTGATTTGGATAAGTTCAAGATG 6828 || || |||| | ||| | ||||||| || || || ||||| |||| || ||| Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 6829 ATTGCATATGGAGATGATGTGATTGCTAGCTACCCCTACCCAATTGA-TGCAGGTCTACT 6887 | || ||||| || |||||| | ||||| ||||||| || ||||| ||| | | | Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGC--CTTGAGT 445 Query 6888 T-GCTAAGGCGGGGAAGGAGTATGGCCTGACAATGACTCCTGCTGACAAATCTAAGGAGT 6946 | |||||| | || || |||||||| |||| ||||||||||| |||||||| | || Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATC-ACCCTGT 504 Query 6947 TT-AACAACGTGACATGGGAGAATGTCACTTTCCTTAAGCG-GTACTTTCGTGCC-GATG 7003 || || | || |||||||| |||| || ||||| ||| | | | ||| |||| || Sbjct 505 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGA--TTCTTGCCAGACC 562 Query 7004 AACAGTACCCCTTCCTGGTCCACCCTGTGATGCCAATGAAGGAGATACATGAGTCCATTA 7063 | || | || ||| | | |||||| |||||| |||| ||||| ||||| |||||| Sbjct 563 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 622 Query 7064 GATGGACAAAAGATGCAAAAAACACACAGGAACATGTAAGATCACTGTGCGAATTGGCAT 7123 ||||||| ||||| || ||||| || || || || | || ||||| ||||||| Sbjct 623 GATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCAT 682 Query 7124 GGCACAATGGTCAAGAGGTTTATGAAGAATTTTTGAGTAAAATTAGGAGTGTTCCTGTTG 7183 ||||||||||| | || | ||||| | ||| ||||| |||||| ||||| |||| Sbjct 683 GGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTTG 742 Query 7184 G 7184 | Sbjct 743 G 743 >seq4303 Length=1160 Score = 123 bits (136), Expect = 1e-24 Identities = 314/474 (66%), Gaps = 4/474 (1%) Strand=Plus/Plus Query 4036 GCTGCAAAAGGCCTAGAATGGATTGCCCAAAAGATTAGTAAATTCATTGATTGGTTGAAA 4095 || || || || |||||||||| || | || |||||||| |||||||| ||| | | Sbjct 664 GCCGCCAAGGGTTTAGAATGGATATCCAACAAAATTAGTAAGTTCATTGACTGGCTCAGG 723 Query 4096 ACCAAAATAGTGCCTGAGGTGAAGGAAAAAGTCGAATTCCTTGGAAAACTCAAACAACTA 4155 || || || || | | ||||| |||| ||||| | || | || ||| | Sbjct 724 GAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTTTTAACCAATTTGAAGCAATTG 783 Query 4156 CCCCTACTCGAAAGTCAGATTACCAGCATTGAGCATAGTGCACCCAGTCAGGATGATCAA 4215 || || | || | ||||| || | | | ||||| || || || || || | Sbjct 784 CCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCCGCTGCCTCACAAGAGGACCTT 843 Query 4216 GAAAGACTTTTTGGAAATGTTCAATACCTGGCTCACTACTGTAGGAGGTACGCACCGCTG 4275 ||| | ||||| ||||| |||||| || || | |||| | | || | ||| | Sbjct 844 GAAGCTATGTTTGGGAATGTGTCATACCTCGCCCATTTCTGTCGCAAGTTCCAACCATTA 903 Query 4276 TATGCGGCAGAAGCAAGAAGGGTGTTCACTTTGGAAAAGAAGATGAGCAATTACATGCAG 4335 || || | ||||| | | || | | | || |||| |||| ||| ||||||||| Sbjct 904 TACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCAG 963 Query 4336 TTCAAGACCAAATCCCGCATTGAACCTGTATGTTTGCTGATACACGGAACCCCCGGAGCA 4395 ||||||| |||| ||| ||||||||||||||| | | || || | || || | Sbjct 964 TTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCACT 1023 Query 4396 GGAAAGTCAGTGGCCTCAAGCCTCATTGGGCGTGCCATCGCTGAGAAAT-TGAATAGCT- 4453 |||||||| | || | | |||||| || | ||| || || || | | | | || Sbjct 1024 GGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACT--CTA 1081 Query 4454 GTGTGTATTCTCTACCACCAGACCCTGACCACTTTGATGGTTACAAACAGCAAG 4507 ||||||| || || ||||||||||||||||| ||||| || || |||||||||| Sbjct 1082 GTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAG 1135 >seq879 Length=349 Score = 98.7 bits (108), Expect = 5e-17 Identities = 201/292 (69%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 3382 ACTACAGCCCATGGTTGTGACGTAATTGCCCGATGCAATTGTAACACTGGTGTGTATTTC 3441 || || || || || |||||| ||||| || |||||||| | || || ||||||| Sbjct 289 ACCACTGCTCAAGGCTGTGACACGATTGCTCGTTGCAATTGCCAGACAGGAGTGTATTAT 230 Query 3442 TGCCGTAGC---AAGGGAAAACACTACCCAGTCTGCTT-TCAAGGACCAGGACTGA-CTT 3496 || || | | | ||||||||||||| ||| | || || | ||| | ||| ||| Sbjct 229 TG---TAACTCAATGAGAAAACACTACCCGGTCAGTTTCTCGA-AACCCAGTTTGATCTT 174 Query 3497 GGATTGAGGCCAACGAATATTACCCGGCTAGATATCAGAGCCATGTCCTTCTTGCCCCTG 3556 | | ||||||| ||| ||||| || |||||||| ||| ||| || | ||||| | Sbjct 173 CG-TGGAGGCCAGCGAGTATTATCCAGCTAGATACCAGTCACATCTCATGCTTGCAGTGG 115 Query 3557 GACCAGCTGAACCAGGTGATTGTGGAGGGATCCTTAGGTGCCAACACGGTGTGATTGGAC 3616 | | | |||||||| ||||| || || || ||||| |||||||| || || | || Sbjct 114 GTCATTCGGAACCAGGGGATTGCGGTGGCATTCTTAGATGCCAACATGGCGTCGTAGGGA 55 Query 3617 TGGTAACCGCTGGTGGAAATGGCATTGTTGCATTTGCTGATTTGAGAGACCT 3668 | || || | || ||||| ||| | || | || || ||| |||| || || Sbjct 54 TAGTTTCCACCGGGGGAAACGGCCTGGTGGGGTTCGCCGATGTGAGGGATCT 3 >seq1891 Length=278 Score = 84.2 bits (92), Expect = 1e-12 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 5854 CAAGGTGAAATTGAGTGGATGGAGACAAACAAAGAATCAGGTTACCCAATTATCAATGCA 5913 || ||||| || | ||| | || | ||||| ||| | ||| | | ||||||| Sbjct 93 CAGGGTGAGATCCAATGGGTAAAGCCTAACAAGGAAACTGGTAGACTGAACATCAATGGT 152 Query 5914 CCAACTAAAACAAAGTTAGAACCTAGTGTGTTTCATGACATTTTCCCCGGTGTTAAGGAA 5973 |||||| || ||| | || |||||||| |||||||| | || ||| ||||||| Sbjct 153 CCAACTCGCACTAAGCTGGAGCCTAGTGTATTTCATGATGTGTTTGAAGGTAATAAGGAA 212 Query 5974 CCAGCAGTTTTAAACAAAAATGATCCCAGACTTAAGGTTGACTTTGAGGAGGCGATCTTT 6033 ||||||||||||| | || || || ||| | |||| |||||||| | || | ||| Sbjct 213 CCAGCAGTTTTAACAAGTAAAGACCCTAGATTGGAGGTCGACTTTGAACAAGCCCTGTTT 272 Query 6034 TCCAAG 6039 |||||| Sbjct 273 TCCAAG 278 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23406829980380