Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_013695.1 Length=7379 Score E Sequences producing significant alignments: (Bits) Value seq4083 363 7e-97 seq4094 311 4e-81 seq4303 183 1e-42 seq1 167 1e-37 >seq4083 Length=3246 Score = 363 bits (402), Expect = 7e-97 Identities = 1107/1676 (66%), Gaps = 80/1676 (5%) Strand=Plus/Minus Query 5535 GGGGTAAATCTAGAGTTGACACTGATCAAACTCAGGAGA--AATGAGAAGTTTAGAGACA 5592 ||||| || ||||| | |||||| | ||| | || | || || || |||||||||| Sbjct 1738 GGGGTTAACTTAGAGCTCACACTGGT--AACGCTTGATACTAACGAAAAATTTAGAGACA 1681 Query 5593 TCAGAGGGTTCATCCCATCAG-----AGGCGGGGGAGATCAATGAAGCTGTTTTGGCTAT 5647 ||| | | ||||| ||| | || | | || ||| || ||| | ||| Sbjct 1680 TCACAAGATTCATACCAGAAACAATTAGTCCTGCTAG-----TGATGCCACTTTAGTTAT 1626 Query 5648 CAATACT-AGCAAGTTCCCAAACATGTTCATCCCAGTTGGAAAAGTACACGAATATGGGT 5706 |||||| | || | |||| ||||| | ||||||||| | || | | ||||||| Sbjct 1625 AAATACTGAACATATGCCCAGT-ATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGT 1567 Query 5707 TTCTCAATTTGAGTGGCACTCCCACCCACAGGATGTTAATGTACAACTTCCCAACCAAAT 5766 || | || | ||||| | ||||| ||||||| | |||||||| |||||||| ||| Sbjct 1566 TTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAG 1507 Query 5767 CAGGACAATGCGGAGGCATACTCATGGCTACAGGTAAGGTGTTAGGAATCCATGTTGGTG 5826 ||||||| || || || | | | || ||||| ||| | || ||||| |||||| Sbjct 1506 CAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTG 1447 Query 5827 GCAATGGGCACCAGGGCTT-TGCTGCAACTCTTTTGAGATCATATTT---CAGTGAAGAG 5882 |||| || || || || ||| || | || ||| ||| || ||||||| Sbjct 1446 GCAACGGTAGGCAAGGTTTCTGC-GCTGCCCTGAAGAGGGGATACTTTTGCAGTGAA--- 1391 Query 5883 CAAGGTGAGATTGAATGGATGGAGACCAACAAGGA----GTCAGGTTATCCCATAATCAA 5938 ||||||||||| |||||||| || ||||||| || | |||||| | ||||| Sbjct 1390 CAAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAAC----ATCAA 1335 Query 5939 TGCACCAACCAAGACAAAACTAGAACCCAGCGTCTTTCATGATGTTTTTGAGGGAAAGAA 5998 | ||| || ||||| || ||||| || |||||||| ||||| || || || | || Sbjct 1334 CGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAA 1275 Query 5999 GGAGCCTGCTGTGTTGAACCCCCGT---GATCCCAGGTTGAGAGTTGATTTTGAAGAAGC 6055 ||||| || ||| ||| | || || || ||| || |||||| |||||| | || Sbjct 1274 AGAGCCAGCAGTGCTGA---CTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGC 1218 Query 6056 TATCTTCTCCAAATATGTGGGTAATGTTAACACA-CATGTG---GATGAATACATGCATG 6111 | | || || ||||| ||||| || || | |||| || || | | | | Sbjct 1217 TCTTTTTTCAAAATACGTGGGGAAC----ACGCTTCATGAACCCGACGAGTTTGTCAAGG 1162 Query 6112 AAGCAATTGATCACTATGCAGGTCAACTCATGACATTGGATATTAGCACTGAACCTCTTT 6171 | || || ||||| ||||||| | || ||||| | || ||| | Sbjct 1161 AGGCGGCCTTACATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACC--ACCAAGAT 1104 Query 6172 GTC--TGGAAGATGC-TGTGTATGGAACTGAAGGATTGGAAGCACTAGATCTAACAACTA 6228 | |||| ||||| ||| || || || || ||||||| ||||||| || | Sbjct 1103 GAGCATGGAGGATGCATGT-TACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAA 1045 Query 6229 GTGCAGGTTATCCTTAT-GTGACACTGGGTATAAAGAAGAGGGACATTCTT--TCCAAAA 6285 ||||||| ||||| || ||| |||| || || ||||| | ||||||| | ||||| | Sbjct 1044 GTGCAGGATATCCATACAGTG-CACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACA 986 Query 6286 AGACCAGAGACCTTACCAAATTAAGGGAATGCATGGATAAGTATGGACTCAACTTACCAA 6345 | | | || | | ||| | | | |||||| |||||||| | | |||| Sbjct 985 ACTC--GCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCG- 929 Query 6346 TGGTC-ACCCATGTCAAAGATGAGCTGAGAAGTGTGGAGAAAGTGCAAGCT-GGTAAATC 6403 | || || |||| |||||||| || || | || || | |||| || || || Sbjct 928 TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGAT-CAAGAAAGGGAAGTC 870 Query 6404 CCGCTTGATTGAAGCTTCCAGTTTGAATGATTCAGTAGCCATGAGACAGACATTTGGAAA 6463 || | || ||||| ||| | ||||| ||||| | ||||| ||||||||| | Sbjct 869 TCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCA 810 Query 6464 CCTGTACAGAACCTTCCACCAAAATCCAGGCGTCATGACAGGTAGTGCAGTGGGATGCAA 6523 ||| || | | |||||| |||||||| || || ||| || || || ||||| Sbjct 809 CCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAA 750 Query 6524 CCCTGATACCTTCTGGAGCAAGATACCAGTGATGTTAGATGGTGAACTTTTCGCCTTTGA 6583 ||| ||| |||||||||||| ||||| | | | || |||||||| ||||| Sbjct 749 CCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGA 690 Query 6584 CTACACAGGGTATGACGCTTCCCTCAGCCCGGTCTGGTTCGCAGCTCTAAAAATATTGCT 6643 |||| | |||||||||||| |||||||| || |||||| || || | ||| | || Sbjct 689 CTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCT 630 Query 6644 GGAGAAAATTGGATACACCAACAATGAGACCAAGTA-----CATTGATTATTTGTGTAAC 6698 | | ||||||||||| || | |||| ||| ||| || | | || Sbjct 629 GCGGGAAATTGGATACTCCGA-----AGACGCAGTGTCTCTCATAGAAGGGATCAATCAC 575 Query 6699 TCCTATCACCTTTACAAAAATAAACATTATTTTGTTAGAGGGGGCATGCCATCTGGTTGC 6758 || |||| | ||| |||||| ||||| |||| ||||| ||||| || |||||| Sbjct 574 ACCCATCATGTGTACCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGC 515 Query 6759 TCAGGGACTTCCATCTTCAACAGTATGATCAACAACATTATAATAAGGACTTTACTCTTG 6818 ||||| || ||||| |||||| ||||||||||| || || || || || | || | Sbjct 514 TCAGGCACCTCCATTTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATT 455 Query 6819 AAGACATACAAGAACATTGACTTGGATAAATTCAGGATGATAGCATACGGTGATGATGTC 6878 || |||| ||| || || | ||| || | | ||| | || ||||| |||||||| Sbjct 454 AAAACATTCAAAGGGATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTG 395 Query 6879 ATTGCAAGTTACCCGTATGCTATTGA-TG-CAGGCCTACTTGCTAAGG-CGGGAAAGGAG 6935 | || |||||||| | | ||||| || | || | ||| ||| | || |||||| Sbjct 394 TTGGCTAGTTACCCCTTCCCAATTGACTGTCTGG---AGTTGGCAAGAACAGGCAAGGAG 338 Query 6936 TATGGCCTGACGATGACACCAGCAGATAAGTCTGCCACCTTCAACAATGTGACGTGGGAA 6995 ||||| || || ||||| || || || ||||| || ||| || | || || ||||| Sbjct 337 TATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAG 278 Query 6996 AACGTCACCTTCTTGAAGAGATTCTTCAGGGCTGACGAACAATTCAATTTTTTGGTTCAT 7055 || | ||| |||||||||||| ||| | |||| | |||||| ||| | | || Sbjct 277 AATGCCACTTTCTTGAAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCAC 218 Query 7056 CCTGTCATGCCTATGAAGGAAATTCATGAGTCAATCAGATGGACTAAAGATGCTAAGAA- 7114 ||| ||||| |||| ||| ||||| || || || | ||||| |||||||| | ||| Sbjct 217 CCTACGATGCCAATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGC-ACGAAG 159 Query 7115 CACTCAAGAACATGTGAGATCGTTATGCGAATTGGCATGGCATAACGGTGAAGAGG 7170 |||||||| || ||| | || | ||| ||| |||||||| ||||| |||||| Sbjct 158 TACTCAAGATCACGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGG 103 Score = 241 bits (266), Expect = 6e-60 Identities = 451/661 (68%), Gaps = 4/661 (1%) Strand=Plus/Minus Query 4032 TGGTTGAAGAAGTTCACAGAGGCAACTAATGCTGCCAAAGGGCTTGAGTGGTTGGCAAAT 4091 ||||| |||||||||| || || | | ||| || || |||||||||||| | | || Sbjct 3238 TGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAAC 3179 Query 4092 AAAATTAGCAAATTCATCGATTGGGTGAAGTCAAAAATTGTCCCGCAAGTCAAGGAAAAA 4151 ||||| || ||||| ||||||||| | ||| ||||| | ||| | || || ||| Sbjct 3178 AAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAAA 3119 Query 4152 TTAGATTTTCTCTCCAAACTGAAACAGTTGCCTCTCTTGGAGAGCCAGATTGCAACCATT 4211 | || ||||| ||| || || || | || | ||||||| ||| ||| | | | Sbjct 3118 GTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTCTAATCTC 3059 Query 4212 GAACATAGTGCTCCTAGTCAAGAGGCTCAAGAAACATTATACGGAAATGTGCAGTACTTA 4271 ||||| || || || |||| | || | | | || || ||| ||| | Sbjct 3058 GAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTACCTG 2999 Query 4272 GCTCATTATTGTAGGAAGTTTGCACCTTTGTATGCCGCTGAAGCCAAGAGAGTATACCAC 4331 || || | || | || || ||| | |||||| | ||||| ||||| || ||| | Sbjct 2998 GCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGCC 2939 Query 4332 TTAGAAAAGAGAATGAACAATTACATGCAGTTCAAGACCAAATCCCGCATTGAACCTGTA 4391 |||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| Sbjct 2938 CTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTA 2879 Query 4392 TGTTTATTGATTCACGGGAGTCCTGGTGCAGGGAAATCAGTTGTTTCTAGTTTAGTTGGG 4451 || || | || || |||||| | ||||| ||| | | | | | ||| Sbjct 2878 TGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCT 2819 Query 4452 CGTGCAATTGCAGAGAAAATGAACAGTTCA--GTGTACTCACTCCCACCAGACCCAGACC 4509 | || || || ||| || | || | || ||||| || | || ||||||||||||| Sbjct 2818 AGAGCCATAGC--AGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACCCAGACC 2761 Query 4510 ATTTTGATGGGTATAAACAACAAGCTGTAGTTATCATGGATGATTTATGTCAAAACCCAG 4569 | ||||| || || |||||||| || | | ||||| || |||| |||||||||| Sbjct 2760 ACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAG 2701 Query 4570 ATGGTAAAGATGTTTCACTACTCTGCCAAATGGTGTCAACAGTTGATTTCATACCTCCAA 4629 | || ||||| | |||||| | || || ||||| || ||||| ||||| ||||| || | Sbjct 2700 ACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTA 2641 Query 4630 TGGCATCTTTGGAAGAAAAAGGCATACTATATACTTCACCATTTATGATTGCCTCAACAA 4689 |||||||| |||| || || || | || || || ||| |||||||||| || | Sbjct 2640 TGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCACTA 2581 Query 4690 A 4690 | Sbjct 2580 A 2580 >seq4094 Length=3074 Score = 311 bits (344), Expect = 4e-81 Identities = 627/913 (69%), Gaps = 38/913 (4%) Strand=Plus/Plus Query 416 GACATGGTGTGAAGAGCCTATTGAGCTAGGTGGTAGTCCTCCGGCCCCTGAATGCGGCTA 475 ||||||||| |||||| |||||||||||| | || ||||||||||||||||||||||||| Sbjct 31 GACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGCCCCTGAATGCGGCTA 90 Query 476 ATCCTAACTCCGGAGCATATCGGTGCGAACCAGCACTTGGTGTGTTGTAATACGTAAGTC 535 ||||||||| ||||||| || | | | |||| | |||||| ||||| | || || Sbjct 91 ATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTC 150 Query 536 TGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTAACTTTTA-TGGCTGCT 594 || ||||||||||||||||||||||||||||||||||| ||| ||| || |||||||| Sbjct 151 TGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCT-TTTATTCTTATATTGGCTGCT 209 Query 595 TATGGTGACAATTTAACA-TTGTTACCATATAGCTGTTGGGTTGGCCATCCGGATTTTG- 652 |||||||||||| || | |||||||||||||||| |||| |||||||||||| | || Sbjct 210 TATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGG--TGTGC 267 Query 653 ----------TTATAAAACCATTTCCTCGTGCCTTG-ACCTTTAACAC----ATTTGTGA 697 || | | | |||| | || ||| ||| ||| ||| | ||||| Sbjct 268 AACAGGGCAATTGTTTACCTATTTATTGGT--TTTGTACCATTATCACTGAAGTCTGTGA 325 Query 698 ACTTCTTTAAATCCCTTTTATTAGTCCTTAAATAC---TAAGAATGGGTGCACAAGTATC 754 | | |||| | |||| | || | || || || ||||| |||| || || Sbjct 326 TCACTCTCAAATTCATTTT----GACCCTCAACACAATCAAACATGGGCTCACAGGTGTC 381 Query 755 CACACAAAAATCCGGATCTCATG-AAACTGGCACTTATGCCACAGGTGGATCAACAATTA 813 ||||||| ||||| || || | ||||| ||| | || || | || || || || | Sbjct 382 CACACAACGCTCCGGTTCACACGAAAACTCTAACTCA-GCTACCGAGGGTTCCACTATAA 440 Query 814 ATTACACAAATATAAACTATTACAAAGATAGTTATGCAGCTAGTGCCTCACGGCAAGATT 873 | || || | || || || || |||||| ||||| || | || || ||| Sbjct 441 ACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAGCAGGTAAGC-AGAGC 499 Query 874 TTTCA-CAAGATCCCTCAAAATTCACAAAGCCCGTAGTAGATGCTCTCACCGAAGCTGCT 932 || | || || || || || |||| || || ||| |||| ||| || Sbjct 500 CTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACTGAAATGGCA 559 Query 933 GTTCCTTTGAAATCACCATCAGCAGAAGCTTGCGGTTATAGTGACCGCGTGTTACAATTG 992 | || || ||||| ||||| || || || || ||||| ||||| || ||| |||||| Sbjct 560 GCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTA 619 Query 993 ACACTAGGCAATTCTACTATTACCACACAGGAAGCTGCTAACATTGTGGTGGGTTATGGT 1052 || | ||||||||||| || || || || ||||| || ||||| | || || |||||| Sbjct 620 ACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGT 679 Query 1053 AAATGGCCAGAACATCTGAAGCCAAT-TGATGCTAACTCAATAGATGCCCCAACAAAACC 1111 | ||||| | ||| | | |||||| | || | || ||||| || Sbjct 680 GAGTGGCC-TTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCC 738 Query 1112 AGATGTAGCTGTGAACAGGTTTTACACTCTGAAAGCCAAAAAGTGGGAAAAGGCTTCCAA 1171 |||||| | ||||| ||||||||||| || | | ||| |||||| ||| | ||||| Sbjct 739 AGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAA 798 Query 1172 AGGTTGGATGTGGAAGTTGCCCGATTGTTTGAATGATACCGGAATATTTGGCCAAAATTG 1231 || ||| ||||| || || ||| || | ||| ||||| | ||||| |||||| Sbjct 799 GGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGC 858 Query 1232 CTGGTATCATTTCTTATA-CAGAGGTGGTTGGGCTATACATGTGCAGTGCAATGCTAGCA 1290 || || | | | || | | |||| || || || ||||||||||||||||| | Sbjct 859 ACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTGCAGTGCAATGCTAGTA 917 Query 1291 AGTTTCACCAGGG 1303 |||| ||||| || Sbjct 918 AGTTCCACCAAGG 930 Score = 118 bits (130), Expect = 5e-23 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 2019 TACTTCAACAACTGGTCAGGGAGCATTGAAA-TCACTTTCATGTTCTGTGGATCCTTCAT 2077 |||| || | | |||||||| | || || || |||| ||||||||| || ||||| || Sbjct 1690 TACTACACCCAATGGTCAGG-ATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTAT 1748 Query 2078 GGCAACAGGCAAGATCTTAATTGCTTACACACCACCAGGAGGTAGTGCCCCGACTGATCG 2137 ||| || |||||||| | || || ||||||||||||||||| || | || || Sbjct 1749 GGCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCG 1808 Query 2138 CAAAAGTGCAATGTTAGGTACACATGTCATTTGGGATTTTGGTCTTCAATCCTCAGCCAC 2197 | || ||||| || || || ||||| ||||| ||||| || ||||| || | ||| Sbjct 1809 GGCGACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCAC 1868 Query 2198 CCTTCTAATCCCATGGATAAGCAATAC 2224 |||| |||| |||||||| ||||| || Sbjct 1869 CCTTGTAATACCATGGATCAGCAACAC 1895 >seq4303 Length=1160 Score = 183 bits (202), Expect = 1e-42 Identities = 339/496 (68%), Gaps = 6/496 (1%) Strand=Plus/Plus Query 4061 TGCTGCCAAAGGGCTTGAGTGGTTGGCAAATAAAATTAGCAAATTCATCGATTGGGTGAA 4120 ||| ||||| || | || ||| | | || |||||||| || ||||| || ||| | | Sbjct 663 TGCCGCCAAGGGTTTAGAATGGATATCCAACAAAATTAGTAAGTTCATTGACTGGCTCAG 722 Query 4121 GTCAAAAATTGTCCCGCAAGTCAAGGAAAAATTAGATTTTCTCTCCAAACTGAAACAGTT 4180 | || ||||| || || |||||| ||| ||| ||| | |||| |||| || || Sbjct 723 GGAGAAGATTGTTCCAGCAGCCAAGGAGAAAGCAGAATTTTTAACCAATTTGAAGCAATT 782 Query 4181 GCCTCTCTTGGAGAGCCAGATTGCAACCATTGAACATAGTGCTCCTAGTCAAGAGGCTCA 4240 ||| || || |||| |||||| | | | | || || ||| | ||||||| | Sbjct 783 GCCACTGTTAGAGAACCAGATCACGAACTTAGAGCAGTCCGCTGCCTCACAAGAGGACCT 842 Query 4241 AGAAACATTATACGGAAATGTGCAGTACTTAGCTCATTATTGTAGGAAGTTTGCACCTTT 4300 ||| | | | || |||||| ||| | || |||| ||| | ||||| ||| || Sbjct 843 TGAAGCTATGTTTGGGAATGTGTCATACCTCGCCCATTTCTGTCGCAAGTTCCAACCATT 902 Query 4301 GTATGCCGCTGAAGCCAAGAGAGTATACCACTTAGAAAAGAGAATGAACAATTACATGCA 4360 || ||| | ||||| ||| |||| || |||| |||||||||||||| |||||||| Sbjct 903 ATACGCCACGGAAGCTAAGCGAGTCTATGTTCTAGAGAAGAGAATGAACAACTACATGCA 962 Query 4361 GTTCAAGACCAAATCCCGCATTGAACCTGTATGTTTATTGATTCACGGGAGTCCTGGTGC 4420 |||||||| |||| ||| ||||||||||||||| | | ||| || || || | Sbjct 963 GTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCAGGCAC 1022 Query 4421 AGGGAAATCAGTTGTTTCTAGTTTAGTTGGGCGTGCAATTGCAGAGAAAATGAACAGTTC 4480 || || || ||| | || | ||| || | || ||||| || || | Sbjct 1023 TGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCACTCTAG 1082 Query 4481 AGTGTACTCACTCCCACCAGACCCAGACCATTTTGATGGGTATAAACAACAAGCTGT--- 4537 ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||| || Sbjct 1083 TGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTGGTCAC 1142 Query 4538 AGTTATCATGGATGAT 4553 |||| ||||||||| Sbjct 1143 AGTT---ATGGATGAT 1155 >seq1 Length=805 Score = 167 bits (184), Expect = 1e-37 Identities = 296/429 (69%), Gaps = 6/429 (1%) Strand=Plus/Plus Query 6738 GGGGGCATGCCATCTGGTTGCTCAGGGACTTCCATCTTCAACAGTATGATCAACAACATT 6797 || || ||||| || || || || || ||||||||||| || |||||||||||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6798 ATAATAAGGACTTTACTCTTGAAGACATACAAGAACATTGACTTGGATAAATTCAGGATG 6857 || || || || | | | || || | ||| || ||| ||||| | || | ||| Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 6858 ATAGCATACGGTGATGATGTCATTGCAAGTTACCCGTATGCTATTGATGCAGGCCT--AC 6915 | || || || || ||||| | || |||||||| | | | |||||| |||| | Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATT---GCCTTGAG 444 Query 6916 TTG-CTAAGGCGGGAAAGGAGTATGGCCTGACGATGACACCAGCAGATAAGTCTGCCACC 6974 ||| ||||| | || || |||||||| |||| ||||| || ||||| || || || Sbjct 445 TTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGT 504 Query 6975 TTCAACAATGTGACGTGGGAAAACGTCACCTTCTTGAAGAGATTCTTCAGGGCTGACGAA 7034 ||||| | || || |||||||| | |||||| |||||||| ||| | | ||| | Sbjct 505 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCAC 564 Query 7035 CAATTCAATTTTTTGGTTCATCCTGTCATGCCTATGAAGGAAATTCATGAGTCAATCAGA 7094 ||||| || || |||| ||| ||||| |||| || || ||||| || || || Sbjct 565 CAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGA 624 Query 7095 TGGACTAAAGATGCTAAGAACACTCAAGAACATGTGAGATCGTTATGCGAATTGGCATGG 7154 ||||||||||| || ||||| ||||| || ||| | || | || ||||||||| Sbjct 625 TGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGG 684 Query 7155 CATAACGGT 7163 || || ||| Sbjct 685 CACAATGGT 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23496425501836