Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_015934.1 Length=7749 Score E Sequences producing significant alignments: (Bits) Value seq1 158 6e-35 seq4083 109 3e-20 seq4094 107 9e-20 >seq1 Length=805 Score = 158 bits (174), Expect = 6e-35 Identities = 309/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 6977 GGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCATAAATAACCTC 7036 || || ||||| |||||||||||||| || |||||||| |||||||| || || ||| || Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 7037 ATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATCGCCTGCGCATC 7096 || || || || ||| || | || ||| ||| ||| ||| ||||| || ||| Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 7097 ATTGCGTACGGTGATGACGTGATTATATCTTACCC--TCACCAGCTGGATGCTGC--TGC 7152 | || || || || || ||| | |||||| | ||| | ||| ||| || Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCA--TTGAT--TGCCTTGA 443 Query 7153 ACTCGCGGAGTGCGGCAAGGATTACAATTTGACAATGACACCTGCAGACAAGTCAGACAC 7212 | || || ||||| || || |||||| ||||| ||||||||||| ||| | Sbjct 444 GTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG 503 Query 7213 ATTCAATGAGGTAACATGGGACAACGTCACCTTTCTTAAGCGACGATTTGTTCCAGACAA 7272 |||||||| ||||||||||| || | ||||| || ||| || |||| | |||||| | Sbjct 504 TTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCA 563 Query 7273 GCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGGACTCAATCCG 7332 || || |||||||| | ||||| | || ||| ||||||| || || || || Sbjct 564 CCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCG 623 Query 7333 CTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCCTCCTAGCATG 7392 ||||| ||| || |||||||| | ||||| | | |||| || | ||||| Sbjct 624 ATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATG 683 Query 7393 GCATAATGGCCAGGAAGTCTACGAGGATTTTGT 7425 ||| ||||| |||| | || ||| | ||||| Sbjct 684 GCACAATGGTAAGGATGAATATGAGAAGTTTGT 716 >seq4083 Length=3246 Score = 109 bits (120), Expect = 3e-20 Identities = 546/859 (64%), Gaps = 43/859 (5%) Strand=Plus/Minus Query 6563 TATGGCTACGACCTCCCGTATGTCACATACCTTAAGGATGAGCTCAGACCAATTGACAAA 6622 ||||| | || || ||||| || || |||| ||||| || || | || ||||| Sbjct 946 TATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAG 887 Query 6623 GTCAGGAAGGGGAAGACCCGCCTGATAGA---GTGCAGTTCCATGAATGACACAATCAGG 6679 ||| ||| |||||| | || || ||||| | |||| | | |||||| || | Sbjct 886 ATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAG---CCTAAATGACTCAGTGTAC 830 Query 6680 ATGAAGACCACTTTTGGTCGCTTGTTTCAGACTTTCCATGCAAATCCAGGTACCGTCACC 6739 ||| | || ||||| | | | | | | ||||||| || ||||||||||| ||||| Sbjct 829 TTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACC 770 Query 6740 GGATCAGCTGTTGGTTGCAACCCGGATCTTGACTGGAGCA-------AATTCTACGCGGA 6792 || ||||||||||| |||||||| ||| | |||||||| |||||||| | | Sbjct 769 GGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCA 710 Query 6793 GATGGGTGACAACCCACTCATAGCGTATGACTACTCAAATTTTGACGCCTCACTGGGCTC 6852 | || | || | |||| ||||||||| | |||||| || || | Sbjct 709 G------GA----TCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCC 660 Query 6853 AGTGTGGTTTGAAGCACTCAAACAGGTCCTCCGTAAATTGGGATACAACGAA-AAGCAG- 6910 ||||||||| || || | ||||| || || | |||||| |||| | |||| Sbjct 659 AGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGAAGACGCAGT 600 Query 6911 --CTCAAGTGCATTGACCACGTGAAGAACAGCACCCACC---TCTACAAGGACATCGTGT 6965 ||| ||| | | | || || |||||| | | ||| | | | Sbjct 599 GTCTC----TCATAG---AAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTT 547 Query 6966 ATGAGGTTGAGGGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCA 7025 || ||| || || ||||| ||||| || || || || ||||| ||||| || || | Sbjct 546 ATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGA 487 Query 7026 TAAATAACCTCATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATC 7085 | || || |||| ||||| ||||| || | || | | ||| || || | ||| Sbjct 486 TCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATG 427 Query 7086 GCCTGCGCATCATTGCGTACGGTGATGACGTGAT-TATATCTTACCCTCACCAGCTGGAT 7144 ||| ||| | || ||||| ||||| ||| | || | |||| ||| || | Sbjct 426 AACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACT 367 Query 7145 GCTGCTGCACTCGCGGAGTGC-GGCAAGGATTACAATTTGACAATGACACCTGCAGACAA 7203 | ||| | | | || | |||||||| || | | || ||||| ||||| ||||| Sbjct 366 G--TCTGGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAA 309 Query 7204 GTCAGACACATTCAATGAGGTAACATGGGACAACGTCACCTTTCTT-AAGCGACGATTTG 7262 |||| | || |||||||| |||||||| || | || ||||||| ||| || |||| Sbjct 308 GTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCA-CTTTCTTGAAGAGAGGATTCT 250 Query 7263 TTCCAGACAAGCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGG 7322 | || || | || ||||| || | ||||||| | |||||| ||||| | Sbjct 249 TGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACG 190 Query 7323 ACTCAATCCGCTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCC 7382 | || || || ||||| ||| ||| || || || | ||||| | | | ||| Sbjct 189 AATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCT 130 Query 7383 TCCTAGCATGGCATAATGG 7401 | |||||||||| || || Sbjct 129 TATTAGCATGGCACAACGG 111 Score = 84.2 bits (92), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 4598 CCACCTGACCCAAAACACTTTGATGGTTACGCCCAGCAACCTGTCGTCA---TCATGGAT 4654 || || |||||| | |||||||| || ||| | |||| |||||| | ||||| Sbjct 2776 CCTCCAGACCCAGACCACTTTGACGGATACA---AACAACAGATCGTCACTGTTATGGAC 2720 Query 4655 GATGTTGGTCAAAACCCTGACGGCGAGGATCTCAAACTCTTCTGCCAGATGGTCTCCTCT 4714 || | | |||||||| ||||| | || | ||| || || |||||||||||| | Sbjct 2719 GACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCAC- 2661 Query 4715 ACTGAATTTGTTGTC-CCAATGGCCGCGCTGGAAGAGAAAGGGATGTCCTTCACCTCAAA 4773 | || |||| | | || ||||| | ||||| ||||| || | || |||||||| || Sbjct 2660 AGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAA 2601 Query 4774 GTTTGTCCTAGCCTCAACTAAC 4795 |||||| | ||||| |||||| Sbjct 2600 GTTTGTGATTGCCTCCACTAAC 2579 >seq4094 Length=3074 Score = 107 bits (118), Expect = 9e-20 Identities = 143/187 (76%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 250 CGAAGAGTCTATTGAGCTACTGT-TGATACCTCCGGCCCCCTGAATGCGGCTAATCTCAA 308 ||||||||||||||||||| | || | ||||||||||| ||||||||||||||| || Sbjct 40 CGAAGAGTCTATTGAGCTAGTTAGTGGT-CCTCCGGCCCC-TGAATGCGGCTAATCCTAA 97 Query 309 CCCCGGAGCCACTGGGTGGTGAACCAACCACTTGGTG-GTCGTAATGAGCAATTCTGGGA 367 | |||||| || | | || | | | ||| ||||||||| |||| |||| Sbjct 98 CTGCGGAGCACATGCCT--TCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCAG 155 Query 368 CGGAACCGACTACTTTGGGGTGTCCGTGTTT-CTTTTGTTCATAT-TAAACTGTTTTATG 425 |||||||||||||||| |||||||||||||| ||||| ||| ||| | ||| ||||| Sbjct 156 CGGAACCGACTACTTT-GGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTG-CTTATG 213 Query 426 GTCACAA 432 || |||| Sbjct 214 GTGACAA 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24680366321076