Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_015934.1
Length=7749
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 6e-35
seq4083 109 3e-20
seq4094 107 9e-20
>seq1
Length=805
Score = 158 bits (174), Expect = 6e-35
Identities = 309/453 (68%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 6977 GGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCATAAATAACCTC 7036
|| || ||||| |||||||||||||| || |||||||| |||||||| || || ||| ||
Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327
Query 7037 ATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATCGCCTGCGCATC 7096
|| || || || ||| || | || ||| ||| ||| ||| ||||| || |||
Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387
Query 7097 ATTGCGTACGGTGATGACGTGATTATATCTTACCC--TCACCAGCTGGATGCTGC--TGC 7152
| || || || || || ||| | |||||| | ||| | ||| ||| ||
Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCA--TTGAT--TGCCTTGA 443
Query 7153 ACTCGCGGAGTGCGGCAAGGATTACAATTTGACAATGACACCTGCAGACAAGTCAGACAC 7212
| || || ||||| || || |||||| ||||| ||||||||||| ||| |
Sbjct 444 GTTGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG 503
Query 7213 ATTCAATGAGGTAACATGGGACAACGTCACCTTTCTTAAGCGACGATTTGTTCCAGACAA 7272
|||||||| ||||||||||| || | ||||| || ||| || |||| | |||||| |
Sbjct 504 TTTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCA 563
Query 7273 GCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGGACTCAATCCG 7332
|| || |||||||| | ||||| | || ||| ||||||| || || || ||
Sbjct 564 CCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCG 623
Query 7333 CTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCCTCCTAGCATG 7392
||||| ||| || |||||||| | ||||| | | |||| || | |||||
Sbjct 624 ATGGACTAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATG 683
Query 7393 GCATAATGGCCAGGAAGTCTACGAGGATTTTGT 7425
||| ||||| |||| | || ||| | |||||
Sbjct 684 GCACAATGGTAAGGATGAATATGAGAAGTTTGT 716
>seq4083
Length=3246
Score = 109 bits (120), Expect = 3e-20
Identities = 546/859 (64%), Gaps = 43/859 (5%)
Strand=Plus/Minus
Query 6563 TATGGCTACGACCTCCCGTATGTCACATACCTTAAGGATGAGCTCAGACCAATTGACAAA 6622
||||| | || || ||||| || || |||| ||||| || || | || |||||
Sbjct 946 TATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAG 887
Query 6623 GTCAGGAAGGGGAAGACCCGCCTGATAGA---GTGCAGTTCCATGAATGACACAATCAGG 6679
||| ||| |||||| | || || ||||| | |||| | | |||||| || |
Sbjct 886 ATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAG---CCTAAATGACTCAGTGTAC 830
Query 6680 ATGAAGACCACTTTTGGTCGCTTGTTTCAGACTTTCCATGCAAATCCAGGTACCGTCACC 6739
||| | || ||||| | | | | | | ||||||| || ||||||||||| |||||
Sbjct 829 TTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCACC 770
Query 6740 GGATCAGCTGTTGGTTGCAACCCGGATCTTGACTGGAGCA-------AATTCTACGCGGA 6792
|| ||||||||||| |||||||| ||| | |||||||| |||||||| | |
Sbjct 769 GGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCA 710
Query 6793 GATGGGTGACAACCCACTCATAGCGTATGACTACTCAAATTTTGACGCCTCACTGGGCTC 6852
| || | || | |||| ||||||||| | |||||| || || |
Sbjct 709 G------GA----TCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCC 660
Query 6853 AGTGTGGTTTGAAGCACTCAAACAGGTCCTCCGTAAATTGGGATACAACGAA-AAGCAG- 6910
||||||||| || || | ||||| || || | |||||| |||| | ||||
Sbjct 659 AGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGAAGACGCAGT 600
Query 6911 --CTCAAGTGCATTGACCACGTGAAGAACAGCACCCACC---TCTACAAGGACATCGTGT 6965
||| ||| | | | || || |||||| | | ||| | | |
Sbjct 599 GTCTC----TCATAG---AAGGGATCAATCACACCCATCATGTGTACCGCAATAAAACTT 547
Query 6966 ATGAGGTTGAGGGAGGTATGCCTTCAGGATGTTCTGGGACATCCATCTTCAATTCAATCA 7025
|| ||| || || ||||| ||||| || || || || ||||| ||||| || || |
Sbjct 546 ATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGA 487
Query 7026 TAAATAACCTCATAATTAGGACACTTGTGTTGAAGTCTTATAAATCAATTGACTTGGATC 7085
| || || |||| ||||| ||||| || | || | | ||| || || | |||
Sbjct 486 TCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATG 427
Query 7086 GCCTGCGCATCATTGCGTACGGTGATGACGTGAT-TATATCTTACCCTCACCAGCTGGAT 7144
||| ||| | || ||||| ||||| ||| | || | |||| ||| || |
Sbjct 426 AACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACT 367
Query 7145 GCTGCTGCACTCGCGGAGTGC-GGCAAGGATTACAATTTGACAATGACACCTGCAGACAA 7203
| ||| | | | || | |||||||| || | | || ||||| ||||| |||||
Sbjct 366 G--TCTGGAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAA 309
Query 7204 GTCAGACACATTCAATGAGGTAACATGGGACAACGTCACCTTTCTT-AAGCGACGATTTG 7262
|||| | || |||||||| |||||||| || | || ||||||| ||| || ||||
Sbjct 308 GTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCA-CTTTCTTGAAGAGAGGATTCT 250
Query 7263 TTCCAGACAAGCACTTCCCATTCTTGGTCCACCCCGTCTTCCCAATGGAAGAGATCATGG 7322
| || || | || ||||| || | ||||||| | |||||| ||||| |
Sbjct 249 TGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACG 190
Query 7323 ACTCAATCCGCTGGACAAAAAGTGCTGCAAACACCCAGCAGCACGTCACCAGCTTGTGCC 7382
| || || || ||||| ||| ||| || || || | ||||| | | | |||
Sbjct 189 AATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCT 130
Query 7383 TCCTAGCATGGCATAATGG 7401
| |||||||||| || ||
Sbjct 129 TATTAGCATGGCACAACGG 111
Score = 84.2 bits (92), Expect = 1e-12
Identities = 142/202 (70%), Gaps = 8/202 (4%)
Strand=Plus/Minus
Query 4598 CCACCTGACCCAAAACACTTTGATGGTTACGCCCAGCAACCTGTCGTCA---TCATGGAT 4654
|| || |||||| | |||||||| || ||| | |||| |||||| | |||||
Sbjct 2776 CCTCCAGACCCAGACCACTTTGACGGATACA---AACAACAGATCGTCACTGTTATGGAC 2720
Query 4655 GATGTTGGTCAAAACCCTGACGGCGAGGATCTCAAACTCTTCTGCCAGATGGTCTCCTCT 4714
|| | | |||||||| ||||| | || | ||| || || |||||||||||| |
Sbjct 2719 GACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCAC- 2661
Query 4715 ACTGAATTTGTTGTC-CCAATGGCCGCGCTGGAAGAGAAAGGGATGTCCTTCACCTCAAA 4773
| || |||| | | || ||||| | ||||| ||||| || | || |||||||| ||
Sbjct 2660 AGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAA 2601
Query 4774 GTTTGTCCTAGCCTCAACTAAC 4795
|||||| | ||||| ||||||
Sbjct 2600 GTTTGTGATTGCCTCCACTAAC 2579
>seq4094
Length=3074
Score = 107 bits (118), Expect = 9e-20
Identities = 143/187 (76%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 250 CGAAGAGTCTATTGAGCTACTGT-TGATACCTCCGGCCCCCTGAATGCGGCTAATCTCAA 308
||||||||||||||||||| | || | ||||||||||| ||||||||||||||| ||
Sbjct 40 CGAAGAGTCTATTGAGCTAGTTAGTGGT-CCTCCGGCCCC-TGAATGCGGCTAATCCTAA 97
Query 309 CCCCGGAGCCACTGGGTGGTGAACCAACCACTTGGTG-GTCGTAATGAGCAATTCTGGGA 367
| |||||| || | | || | | | ||| ||||||||| |||| ||||
Sbjct 98 CTGCGGAGCACATGCCT--TCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCAG 155
Query 368 CGGAACCGACTACTTTGGGGTGTCCGTGTTT-CTTTTGTTCATAT-TAAACTGTTTTATG 425
|||||||||||||||| |||||||||||||| ||||| ||| ||| | ||| |||||
Sbjct 156 CGGAACCGACTACTTT-GGGTGTCCGTGTTTCCTTTTATTCTTATATTGGCTG-CTTATG 213
Query 426 GTCACAA 432
|| ||||
Sbjct 214 GTGACAA 220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24680366321076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |