Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_015941.1
Length=7693
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 2e-16
seq4083 78.8 5e-11
>seq1
Length=805
Score = 96.9 bits (106), Expect = 2e-16
Identities = 242/363 (67%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 7002 GGTGGGATGCCATCTGGTTGCTCTGGGACATCAATTTTTAATTCCATTATAAATAATATA 7061
||||| ||||| || || || ||||| || || || |||||||| || || || || ||
Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327
Query 7062 ATAATTAGGACATTAGTTTTAGATGTTTATAAGGGAATAGATTTGGATCAGTTGCGCATG 7121
|| || || || | | | | || |||||||||||| ||||| ||||| ||||
Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387
Query 7122 ATAGCCTATGGAGATGATGTTATTGCAACCTATCCCTTCCAACTTGATGCTGGC--GCCT 7179
| |||||||| || ||||| | || | || ||||| | ||||| || | | |
Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGAT--TGCCTTGAGT 445
Query 7180 TGGCTGAGGCTGGTACCACATATGGGTTGCAGATGACTCCACCTGAC-AAGGATTCTGAT 7238
||||| || |||| | ||||| ||| |||||||| | ||| || | ||| |
Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG-T 504
Query 7239 TTTAATGATACAACCTGGGACAACGTGACCTTTCTTAAGAGAACCTTTGTTCCAGATTCT 7298
|| ||||| ||| ||||| || | ||||| || |||||| || | |||||
Sbjct 505 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCAC 564
Query 7299 GAGTTTCCTTTCCTTGTCCATCCCTGTTTTCCAATGAAGGAGGTTTTTGAATCCATTCGC 7358
| ||||| ||| | | || || | || |||| ||| | ||||||||||||
Sbjct 565 CAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGA 624
Query 7359 TGG 7361
|||
Sbjct 625 TGG 627
>seq4083
Length=3246
Score = 78.8 bits (86), Expect = 5e-11
Identities = 109/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 4687 TTATGGATGATCTGGGACAAAACCCAGATGGAGAAGA-TTGTAAGCTGCTGTGTCAAATG 4745
||||||| || || | ||||||||||| || |||| ||| | || | ||||| |||
Sbjct 2727 TTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCA-CTATTTTGTCAGATG 2669
Query 4746 GTATCCTCAACAGAGTTTATAACCCCTATGGCTTCTTTGGATGACAAGGGAATGCCTTTT 4805
|| ||| || || |||||| | |||||||| ||| |||| || |||||| | | ||
Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2609
Query 4806 ACATCTGATTTTGTTCTTGCGTCAACTAAC 4835
|| || | ||||| |||| || ||||||
Sbjct 2608 ACCTCCAAGTTTGTGATTGCCTCCACTAAC 2579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24501175278164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |