Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_015941.1 Length=7693 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-16 seq4083 78.8 5e-11 >seq1 Length=805 Score = 96.9 bits (106), Expect = 2e-16 Identities = 242/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 7002 GGTGGGATGCCATCTGGTTGCTCTGGGACATCAATTTTTAATTCCATTATAAATAATATA 7061 ||||| ||||| || || || ||||| || || || |||||||| || || || || || Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 7062 ATAATTAGGACATTAGTTTTAGATGTTTATAAGGGAATAGATTTGGATCAGTTGCGCATG 7121 || || || || | | | | || |||||||||||| ||||| ||||| |||| Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 7122 ATAGCCTATGGAGATGATGTTATTGCAACCTATCCCTTCCAACTTGATGCTGGC--GCCT 7179 | |||||||| || ||||| | || | || ||||| | ||||| || | | | Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGAT--TGCCTTGAGT 445 Query 7180 TGGCTGAGGCTGGTACCACATATGGGTTGCAGATGACTCCACCTGAC-AAGGATTCTGAT 7238 ||||| || |||| | ||||| ||| |||||||| | ||| || | ||| | Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTG-T 504 Query 7239 TTTAATGATACAACCTGGGACAACGTGACCTTTCTTAAGAGAACCTTTGTTCCAGATTCT 7298 || ||||| ||| ||||| || | ||||| || |||||| || | ||||| Sbjct 505 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCAC 564 Query 7299 GAGTTTCCTTTCCTTGTCCATCCCTGTTTTCCAATGAAGGAGGTTTTTGAATCCATTCGC 7358 | ||||| ||| | | || || | || |||| ||| | |||||||||||| Sbjct 565 CAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGA 624 Query 7359 TGG 7361 ||| Sbjct 625 TGG 627 >seq4083 Length=3246 Score = 78.8 bits (86), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 4687 TTATGGATGATCTGGGACAAAACCCAGATGGAGAAGA-TTGTAAGCTGCTGTGTCAAATG 4745 ||||||| || || | ||||||||||| || |||| ||| | || | ||||| ||| Sbjct 2727 TTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCA-CTATTTTGTCAGATG 2669 Query 4746 GTATCCTCAACAGAGTTTATAACCCCTATGGCTTCTTTGGATGACAAGGGAATGCCTTTT 4805 || ||| || || |||||| | |||||||| ||| |||| || |||||| | | || Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2609 Query 4806 ACATCTGATTTTGTTCTTGCGTCAACTAAC 4835 || || | ||||| |||| || |||||| Sbjct 2608 ACCTCCAAGTTTGTGATTGCCTCCACTAAC 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24501175278164