Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_016156.1 Length=7391 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-22 seq4083 96.9 2e-16 >seq1 Length=805 Score = 116 bits (128), Expect = 2e-22 Identities = 293/440 (67%), Gaps = 4/440 (1%) Strand=Plus/Plus Query 6777 GGTGGCATGCCATCGGGGTGTTCTGGCACGTCCATCTTGAATTCGATAATCAACAACCTC 6836 ||||| ||||| || || |||||||| || |||||||| ||||| || ||||||||| || Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6837 ATTATCAAGACCCTGGTACTTAGGACTTACAAAGGTGTGGATCTGGACCAAATGAAGATC 6896 || |||| ||||| | | | |||| || || | || ||||| | |||| || Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 6897 CTAGCCTACGGGGATGACGTTATAGTGACCTACCCCTTCCAGCTGGAT-GCATCGATAGT 6955 | ||||| ||||| || || | | | |||||||| | | ||| || | || | Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT-T 446 Query 6956 GGCAGAGGAAGGGAAACTCTTTGGTCTCATCATGACTCCTCCAGACAAGACCTCCACCTT 7015 ||| || || ||| | |||| | | |||||||||| ||||||| | || || Sbjct 447 GGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTT 506 Query 7016 CAATGAGACCACTTGGGACACCGTCACATTTCTCAAAAGGAAGTTTGTACCAGACCACCA 7075 |||||| || ||||| | | || || || || || || | ||||||||||| Sbjct 507 CAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCA 566 Query 7076 ATTCCCCTTCTTAATCCATCCCGTTTTTCCTATGTCTGAAATATATGAGTCGATACGCTG 7135 ||| || |||||||| || || | || ||| || || |||| || || || || Sbjct 567 ATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATG 626 Query 7136 GACTCGCAACCCTCAGCAA-ACCAATGAACATGTGGATTCGCTTTGTCGTTTAGCCTGGC 7194 |||| || | | |||| ||| | || || ||| || || |||| || || |||| Sbjct 627 GACTAAAGACGCGC-GCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGC 685 Query 7195 ATTGTGGAGAAGAGGAATAT 7214 | ||| | || |||||| Sbjct 686 ACAATGGTAAGGATGAATAT 705 >seq4083 Length=3246 Score = 96.9 bits (106), Expect = 2e-16 Identities = 220/323 (68%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 6777 GGTGGCATGCCATCGGGGTGTTCTGGCACGTCCATCTTGAATTCGATAATCAACAACCTC 6836 || || ||||| || || || || ||||| ||||| || || ||||| |||||||| || Sbjct 535 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 476 Query 6837 ATTATCAAGACCCTGGTACTTAGGACTTACAAAGGTGTGGATCTGGACCAAATGAAGATC 6896 ||||| | || || | ||| || | |||||| | ||||| || || |||| || Sbjct 475 ATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATG 416 Query 6897 CTAGCCTACGGGGATGACGTTATAGTGACCTACCCCTT-CCAGCTGGATGCATCGATAGT 6955 | |||||||||||||| || | | | |||||||| ||| || || | || | Sbjct 415 GTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGA-GTT 357 Query 6956 GGCAGAGGA-AGGGAAACTCTTTGGTCTCATCATGACTCCTCCAGACAAGACCTCCACCT 7014 |||| || | ||| || | |||||| | ||||| ||| | |||||| | || || Sbjct 356 GGCA-AGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCT 298 Query 7015 TCAATGAGACCACTTGGGACACCGTCACATTTCTCAAAAGGAAG-TTTGTACCAGACCAC 7073 | |||||| || ||||| | | ||| ||||| || || | || | || || || Sbjct 297 TTAATGAGGTTACATGGGAGAATGCCAC-TTTCTTGAAGAGAGGATTCTTGCCTGATCAT 239 Query 7074 CAATTCCCCTTCTTAATCCATCC 7096 |||||||| || | ||||| || Sbjct 238 CAATTCCCGTTTCTCATCCACCC 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23534823582460