Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_016156.1
Length=7391
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 2e-22
seq4083 96.9 2e-16
>seq1
Length=805
Score = 116 bits (128), Expect = 2e-22
Identities = 293/440 (67%), Gaps = 4/440 (1%)
Strand=Plus/Plus
Query 6777 GGTGGCATGCCATCGGGGTGTTCTGGCACGTCCATCTTGAATTCGATAATCAACAACCTC 6836
||||| ||||| || || |||||||| || |||||||| ||||| || ||||||||| ||
Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327
Query 6837 ATTATCAAGACCCTGGTACTTAGGACTTACAAAGGTGTGGATCTGGACCAAATGAAGATC 6896
|| |||| ||||| | | | |||| || || | || ||||| | |||| ||
Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387
Query 6897 CTAGCCTACGGGGATGACGTTATAGTGACCTACCCCTTCCAGCTGGAT-GCATCGATAGT 6955
| ||||| ||||| || || | | | |||||||| | | ||| || | || |
Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT-T 446
Query 6956 GGCAGAGGAAGGGAAACTCTTTGGTCTCATCATGACTCCTCCAGACAAGACCTCCACCTT 7015
||| || || ||| | |||| | | |||||||||| ||||||| | || ||
Sbjct 447 GGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTTT 506
Query 7016 CAATGAGACCACTTGGGACACCGTCACATTTCTCAAAAGGAAGTTTGTACCAGACCACCA 7075
|||||| || ||||| | | || || || || || || | |||||||||||
Sbjct 507 CAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACCA 566
Query 7076 ATTCCCCTTCTTAATCCATCCCGTTTTTCCTATGTCTGAAATATATGAGTCGATACGCTG 7135
||| || |||||||| || || | || ||| || || |||| || || || ||
Sbjct 567 ATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATG 626
Query 7136 GACTCGCAACCCTCAGCAA-ACCAATGAACATGTGGATTCGCTTTGTCGTTTAGCCTGGC 7194
|||| || | | |||| ||| | || || ||| || || |||| || || ||||
Sbjct 627 GACTAAAGACGCGC-GCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGC 685
Query 7195 ATTGTGGAGAAGAGGAATAT 7214
| ||| | || ||||||
Sbjct 686 ACAATGGTAAGGATGAATAT 705
>seq4083
Length=3246
Score = 96.9 bits (106), Expect = 2e-16
Identities = 220/323 (68%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 6777 GGTGGCATGCCATCGGGGTGTTCTGGCACGTCCATCTTGAATTCGATAATCAACAACCTC 6836
|| || ||||| || || || || ||||| ||||| || || ||||| |||||||| ||
Sbjct 535 GGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAACAATATC 476
Query 6837 ATTATCAAGACCCTGGTACTTAGGACTTACAAAGGTGTGGATCTGGACCAAATGAAGATC 6896
||||| | || || | ||| || | |||||| | ||||| || || |||| ||
Sbjct 475 ATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTGAACATG 416
Query 6897 CTAGCCTACGGGGATGACGTTATAGTGACCTACCCCTT-CCAGCTGGATGCATCGATAGT 6955
| |||||||||||||| || | | | |||||||| ||| || || | || |
Sbjct 415 GTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTGGA-GTT 357
Query 6956 GGCAGAGGA-AGGGAAACTCTTTGGTCTCATCATGACTCCTCCAGACAAGACCTCCACCT 7014
|||| || | ||| || | |||||| | ||||| ||| | |||||| | || ||
Sbjct 356 GGCA-AGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACCCTGCT 298
Query 7015 TCAATGAGACCACTTGGGACACCGTCACATTTCTCAAAAGGAAG-TTTGTACCAGACCAC 7073
| |||||| || ||||| | | ||| ||||| || || | || | || || ||
Sbjct 297 TTAATGAGGTTACATGGGAGAATGCCAC-TTTCTTGAAGAGAGGATTCTTGCCTGATCAT 239
Query 7074 CAATTCCCCTTCTTAATCCATCC 7096
|||||||| || | ||||| ||
Sbjct 238 CAATTCCCGTTTCTCATCCACCC 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23534823582460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |