Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_016964.1 Length=7948 Score E Sequences producing significant alignments: (Bits) Value seq1 156 2e-34 seq4094 125 4e-25 seq4083 125 4e-25 >seq1 Length=805 Score = 156 bits (172), Expect = 2e-34 Identities = 335/492 (68%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 7267 TTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAATAATA 7326 |||| |||||||| || ||||| ||| || || || || ||||| ||| | || || | Sbjct 266 TTGGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACA 325 Query 7327 TCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTAAAGA 7386 |||| |||||||| ||| | | | | | ||| ||||| | | |||||||| || | Sbjct 326 TCATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 385 Query 7387 TTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTT-CCCATTGGATGCTTCCATT 7445 | |||| ||||| || ||||| | | | |||||||| ||||||| ||| | | | Sbjct 386 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 445 Query 7446 TTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTCTGCA 7505 | |||| | | || ||| ||||||| ||||||||||| ||| | || || | Sbjct 446 T-GGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGT 504 Query 7506 TTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTCTGATTCT 7565 ||||||||| |||| ||||| |||| || || | ||||| | | || || | | | Sbjct 505 TTCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAG-AGGATTCTTGCC-AGACC 562 Query 7566 AGC--TTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCTGCTC 7623 | | ||||| || | ||||| || | ||||||| || || ||||| || || Sbjct 563 ACCAATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTC 622 Query 7624 GCTGGACTCGTTCGGCA-GCAACTACTGAAGAGCATATTCGCTCCCTGTGTCATCTGGCA 7682 | |||||| || ||||| || |||| || | ||||||||||||| ||||| Sbjct 623 GATGGACTAAAGACGCGCGCAAC-ACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCA 681 Query 7683 TGGCACAATGGAGAGGGTGATTATAACGAATTTCTTTCTCAGATTAGATCTGTCCCTGTA 7742 ||||||||||| ||| ||| ||| | | ||| | | |||||||| || || || Sbjct 682 TGGCACAATGGTAAGGATGAATATGAGAAGTTTGTGAGTGCAATTAGATCAGTTCCAGTT 741 Query 7743 GGTAGAGCTTTG 7754 || | ||| ||| Sbjct 742 GGAAAAGCGTTG 753 >seq4094 Length=3074 Score = 125 bits (138), Expect = 4e-25 Identities = 125/158 (79%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 472 TCCTCCGGCCCCTGAATGCGGCTAATCCTAACCCACTTGCACACGCTCGCAACCCAGTGA 531 |||||||||||||||||||||||||||||||| ||||| || ||| |||| | Sbjct 67 TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGG 126 Query 532 GTGGTGTGTCGTAATGCGCAAGAAGTGGA-CGGAACCGACTACTTTGGGTGTCCGTGTTT 590 || ||||||||||||| |||| || | |||||||||||||||||||||||||||||| Sbjct 127 GTAGTGTGTCGTAATGGGCAA-CTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTT 185 Query 591 CtttttttATTTACCAAGTCT-CTTATGGTCACAAGCA 627 | |||| | ||| | || |||||||| |||| || Sbjct 186 CCTTTTATTCTTATATTGGCTGCTTATGGTGACAATCA 223 >seq4083 Length=3246 Score = 125 bits (138), Expect = 4e-25 Identities = 295/435 (68%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 7263 GTTGTTGGAGGAATGCCATCCGGATGCAGTGGAACCTCAATTTTCAATTCCATGTTGAAT 7322 ||| |||| |||||||| || || ||| || ||||| |||||||| || ||| | || Sbjct 541 GTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAACTCGATGATCAAC 482 Query 7323 AATATCATAATCAGAACTCTTGTTTTGGATGCGTATAAAGGAATTAATTTAGATGAGTTA 7382 |||||||| || ||||| || | | | | | ||||| || || ||||||| | Sbjct 481 AATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGGGATAGATCTAGATGAACTG 422 Query 7383 AAGATTTTGGCATATGGAGATGATGTTATTGTCACATACCCCTTCCCATTGGA-TGCTTC 7441 || || |||| || || |||||||| | | | |||||||||||| | || || | Sbjct 421 AACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCCCTTCCCAATTGACTGTCTG 362 Query 7442 CATTTTGGCTGAAATAGGAAAACAGTATGGATTGACCATGACCCCTCCGGATAAGGGTTC 7501 | || ||| || ||| || ||||||| | || ||||||||| | || ||| | Sbjct 361 GAGTT-GGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCCTGCCGACAAGTCACC 303 Query 7502 -TGCATTCAATGAAATAACTTGGGATAATGTCACATTTTTAAAGAGGAAGTTTGTTTC-T 7559 ||| || ||||| | || ||||| |||| ||| || || ||||| | | || || | | Sbjct 302 CTGCTTT-AATGAGGTTACATGGGAGAATGCCACTTTCTTGAAGAG-AGGATTCTTGCCT 245 Query 7560 GATTCTAGCTTTCCTTTTCTTATTCATCCCGTTTTTCCCATGAAGGAAATTCATGAGTCT 7619 ||| | || || ||||| || || || | || |||| ||| ||||| || || Sbjct 244 GATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATGAGGGAGATTCACGAATCC 185 Query 7620 GCTCGCTGGACTCGTTCGGCAGCAACTACTGAAGAGCATATTCGCTCCCTGTG-TCATCT 7678 ||| ||||| ||| || |||| |||| || | |||||||| || | || | Sbjct 184 ATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGCTCCCTCTGCTTAT-T 126 Query 7679 GGCATGGCACAATGG 7693 ||||||||||| || Sbjct 125 AGCATGGCACAACGG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25317134491424