Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_021220.1 Length=7397 Score E Sequences producing significant alignments: (Bits) Value seq4083 203 2e-48 seq763 96.9 2e-16 seq4094 89.7 2e-14 >seq4083 Length=3246 Score = 203 bits (224), Expect = 2e-48 Identities = 649/996 (65%), Gaps = 32/996 (3%) Strand=Plus/Minus Query 5699 TTGTAAACACCTCAGCATAT-CCCAACCTGTTCATGCCAGTTGGTGCAGTGAAGGACTAC 5757 || |||| || | | ||||| |||| |||| |||||||||| | ||| | || Sbjct 1629 TTATAAATAC-TGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTAT 1571 Query 5758 GGCTACCTCAACCTAGCAGGTAGGCCCACACACCGTACGCTTATGTACAACTTTCCGACA 5817 || | | ||||| |||| |||||| ||| | || | |||||||| || || ||| Sbjct 1570 GGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACA 1511 Query 5818 AGAGCAGGACAGTGTGGTGGTGTCGCGGTCTCCATGGGCAAAGTGATTGGCATCCACATT 5877 | ||||||||||||||||||||| | | || |||| ||||||||||| ||||||||| Sbjct 1510 AAAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATT 1451 Query 5878 GGAGGTAATGGAGCACAAGGTTT-TGCAGCAGCGTTACTCCGCAGGTACTT---CACTCA 5933 || || || || |||||||| ||| || || | | | ||||| || | | Sbjct 1450 GGTGGCAACGGTAGGCAAGGTTTCTGC-GCTGCCCTGAAGAGGGGATACTTTTGCAGTGA 1392 Query 5934 ACCCCAGGGAGAAATTGAGTTCATGGAGAAAAGCAAGGAC----GCAGGATATCCTATCA 5989 || | || || || | | ||| || | ||| || ||||| | | || Sbjct 1391 AC---AAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTG----AACA 1339 Query 5990 TCAACGCACCCACTAAAACCAAGCTCCACCCCAGCGTGTTCTTTGATGTTTTCCCAGGTG 6049 |||||| ||| ||| || ||||| | || || || || ||||| ||| ||| Sbjct 1338 TCAACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCA 1279 Query 6050 AGAAAGAACCAGCAGTTCTCCACAGGAAGGATAAGAGGCTAGAAGTTGACTTCGAGGAAG 6109 ||||| |||||||| || || || || ||||| ||||||||||| || | | Sbjct 1278 CTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGG 1219 Query 6110 CTCTCTTTTCTAAGTATATTGGCAACATCCACAAGCCTGTGACCGAGGAGAT------GG 6163 |||| ||||| || || | || |||| | | || |||| ||| | || Sbjct 1218 CTCTTTTTTCAAAATACGTGGGGAACACGCTTCA---TGAACCCGACGAGTTTGTCAAGG 1162 Query 6164 AGATAGCAATAGACCATTATGCTAATCAGCTCAAACAACTTAATATTGATCCCACCCCTA 6223 || || || |||||||| || || ||||| || | |||| | ||||| | Sbjct 1161 AGGCGGCCTTA---CATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACCACCAAGA 1105 Query 6224 TCAGTATGGAAGACGCCATCTATGGTACAGAGGGTCTTGAAGCACTTGATCTTGGAACTA 6283 | || ||||| || || || || |||||| || ||||| | |||||| || | Sbjct 1104 TGAGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAA 1045 Query 6284 GTGCAGGTTACCCATACGTGGCGCTGGGCATTAAGAAGAGAGATATACTCAA-CAAAGAG 6342 ||||||| || |||||| || || ||||| ||||| | || || | | | || | Sbjct 1044 GTGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACA- 986 Query 6343 ACTAGAGATGTCTCCAAAATGCAGCAATGCATAGACAAGTACGGGCTCAACCTACCCATG 6402 ||| | |||||| ||| ||| | | ||| |||||||| ||| | | ||||| Sbjct 985 ACTCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTAC 926 Query 6403 GTTACCTATGTGAAGGATGAGCTCAGGTCAAAAGAGAAAGTGAAGAAGGGCAAAAGCCGA 6462 ||| ||||| || ||||| || ||| | | || || | ||||| || || || Sbjct 925 TCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGT 866 Query 6463 CTCATTGAAGCGTCGAGTCTAAATGATTCCGTTGCGATGAGGTGCGCCTTCGGAAATCTC 6522 ||||| |||||| || |||||||| || || |||| | || || | || Sbjct 865 CTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTT 806 Query 6523 TACAAGGCTTTTCACACAAACCCAGGCACCCTCACGGGGTGTGCAGTTGGGTGCAACCCT 6582 || | ||||| ||| | || ||||| || |||| || | || |||||||||||||| Sbjct 805 TATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCA 746 Query 6583 GAGACCTTTTGGAGCAAAATCCCGGTCATGATGGACGGAGAGCTTTTTGGCTTCGACTAC 6642 || || |||||||| | || | | | ||| |||||| | || |||||| Sbjct 745 GATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTAC 686 Query 6643 ACTGCGTATGACGCCAGTCTCTCCCCTGTCTGGTTC 6678 | | ||||||||| |||||| ||| || |||||| Sbjct 685 TCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTC 650 Score = 98.7 bits (108), Expect = 5e-17 Identities = 228/341 (67%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 4402 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGTTTGATCCATGGAACGCCG 4461 ||||||||||||| ||| | || ||||||||||| ||| | ||| || |||| Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2855 Query 4462 GGCACTGGTAAATCACTTGCCACGACTATTATTGGCAGGAAGATCGCTGAGTACGAGAAT 4521 || ||||| || ||| | || || ||||||| || || || || | | | Sbjct 2854 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCAC 2795 Query 4522 AGCGGGGTCTATAGTTTGCCACCTGACCCAGACCACTTTGATGGCTACGCCGAGCAGGCA 4581 | | || ||| || || || ||||||||||||||||| || ||| | ||| Sbjct 2794 TCCAGTGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATC 2735 Query 4582 GTTGTAATTATGGATGATCTGCATCAGAACCCAGACGGCAAAGATATGAGCTTGTTTTGT 4641 || ||||||| || || || ||||||||||| ||||| ||| | |||||| Sbjct 2734 GTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGT 2675 Query 4642 CAGATGGTTTCCACCACCCCCTTCGTGGTTCCGATGGCTGCTCTCGAGGATAAAGGTAGA 4701 |||||||| ||||| || | || ||||| |||| ||||| |||| || Sbjct 2674 CAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGA-GAAGGGAGT 2616 Query 4702 CT-TTTCACCTCCAAATATGTGCTGGCCTCAACAAATGCCA 4741 || ||||||||||| | |||| | ||||| || || |||| Sbjct 2615 CTCATTCACCTCCAAGTTTGTGATTGCCTCCACTAACGCCA 2575 Score = 80.6 bits (88), Expect = 1e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 7126 GATATTCATGAGTCCATTCGTTGGACCAAGGATGCTAAATCTACCCAGGATCATGTTAGA 7185 || ||||| || ||||||||||||||||| ||||| | ||| || ||||| || | Sbjct 199 GAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGC 140 Query 7186 TCCCTGTGCCTATTGGCCTGGCACTGCGGACAAGAACAGTATGAAGAGTTTCTG 7239 ||||| ||| |||| || |||||| ||| |||| |||||||| | ||| || Sbjct 139 TCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGAAAAATTTGTG 86 >seq763 Length=367 Score = 96.9 bits (106), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 886 GGGTCAAACATCCATTACACTAACATCAACTATTACGAGAACGC---TGCCTCTAACAGC 942 || || | ||| ||||||||| ||||||||||||| | || | ||| | | |||| Sbjct 139 GGCTCCACCATTAATTACACTACCATCAACTATTACAAAGACTCCTATGCTGCGA-CAGC 197 Query 943 CTTAACAAGCAGGACTTTACGCAAGACCCTGAGAAGTTTACTCGTCCGGTGGTTGATGTA 1002 | | ||| | | | ||||||||||| |||||| || || || || | Sbjct 198 GGGTAAA--CAGAGCCTCAAACAAGACCCTGATAAGTTTGCTAACCCTGTCAAAGACATT 255 Query 1003 ATGAAGGAAGCTGCAGTGCCACTCAAAAGTCCATCCGCTGAAGCGTGTGGTTATAGTGAC 1062 | | ||| || | |||||| || ||||||||||||||| |||||||| ||||| Sbjct 256 TTCACTGAAATGGCTGCGCCACTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAGTGAT 315 Query 1063 AGAGTAGCACAACTGACCCTCGGAAACTCCACCATTACCACTCAAGAGGC 1112 | || |||||||| ||| | || |||||||||||||| || || ||||| Sbjct 316 CGCGTGGCACAACTCACCATTGGGAACTCCACCATTACTACACAGGAGGC 365 >seq4094 Length=3074 Score = 89.7 bits (98), Expect = 2e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 2080 TATTACACCCAGTGGTCTGGGTCCATAGAGTTCACCTTCATGTTTTGCGGGACTTTCATG 2139 || |||||||| ||||| || || | || ||||||||||||| |||| | || ||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2140 TCCACGGGCAAGGTTATAATCGCGTACACCCCACCTGGAGGCACAGCCCCCA--CATCGC 2197 | || |||||| | | || || ||||| ||||| |||||| | |||| | || Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCG- 1808 Query 2198 GCCGAGAGGCGATGCTGGGGACCCACATAGTTTGGGACTTTGGTCTACAATCCTCGATAA 2257 | ||| || ||| |||| || ||| | | ||||||||||| || ||||| || | | Sbjct 1809 GGCGA-CCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCA 1867 Query 2258 CCCTTGTTGTCCCCTGGATC 2277 ||||||| | || |||||| Sbjct 1868 CCCTTGTAATACCATGGATC 1887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23554022622772