Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_021220.1
Length=7397
Score E
Sequences producing significant alignments: (Bits) Value
seq4083 203 2e-48
seq763 96.9 2e-16
seq4094 89.7 2e-14
>seq4083
Length=3246
Score = 203 bits (224), Expect = 2e-48
Identities = 649/996 (65%), Gaps = 32/996 (3%)
Strand=Plus/Minus
Query 5699 TTGTAAACACCTCAGCATAT-CCCAACCTGTTCATGCCAGTTGGTGCAGTGAAGGACTAC 5757
|| |||| || | | ||||| |||| |||| |||||||||| | ||| | ||
Sbjct 1629 TTATAAATAC-TGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTAT 1571
Query 5758 GGCTACCTCAACCTAGCAGGTAGGCCCACACACCGTACGCTTATGTACAACTTTCCGACA 5817
|| | | ||||| |||| |||||| ||| | || | |||||||| || || |||
Sbjct 1570 GGGTTTTTGAACCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACA 1511
Query 5818 AGAGCAGGACAGTGTGGTGGTGTCGCGGTCTCCATGGGCAAAGTGATTGGCATCCACATT 5877
| ||||||||||||||||||||| | | || |||| ||||||||||| |||||||||
Sbjct 1510 AAAGCAGGACAGTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATT 1451
Query 5878 GGAGGTAATGGAGCACAAGGTTT-TGCAGCAGCGTTACTCCGCAGGTACTT---CACTCA 5933
|| || || || |||||||| ||| || || | | | ||||| || | |
Sbjct 1450 GGTGGCAACGGTAGGCAAGGTTTCTGC-GCTGCCCTGAAGAGGGGATACTTTTGCAGTGA 1392
Query 5934 ACCCCAGGGAGAAATTGAGTTCATGGAGAAAAGCAAGGAC----GCAGGATATCCTATCA 5989
|| | || || || | | ||| || | ||| || ||||| | | ||
Sbjct 1391 AC---AAGGTGAGATCCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTG----AACA 1339
Query 5990 TCAACGCACCCACTAAAACCAAGCTCCACCCCAGCGTGTTCTTTGATGTTTTCCCAGGTG 6049
|||||| ||| ||| || ||||| | || || || || ||||| ||| |||
Sbjct 1338 TCAACGGACCTACTCGCACAAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCA 1279
Query 6050 AGAAAGAACCAGCAGTTCTCCACAGGAAGGATAAGAGGCTAGAAGTTGACTTCGAGGAAG 6109
||||| |||||||| || || || || ||||| ||||||||||| || | |
Sbjct 1278 CTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGG 1219
Query 6110 CTCTCTTTTCTAAGTATATTGGCAACATCCACAAGCCTGTGACCGAGGAGAT------GG 6163
|||| ||||| || || | || |||| | | || |||| ||| | ||
Sbjct 1218 CTCTTTTTTCAAAATACGTGGGGAACACGCTTCA---TGAACCCGACGAGTTTGTCAAGG 1162
Query 6164 AGATAGCAATAGACCATTATGCTAATCAGCTCAAACAACTTAATATTGATCCCACCCCTA 6223
|| || || |||||||| || || ||||| || | |||| | ||||| |
Sbjct 1161 AGGCGGCCTTA---CATTATGCCAACCAACTCAAGCAGTTAGATATCAAGACCACCAAGA 1105
Query 6224 TCAGTATGGAAGACGCCATCTATGGTACAGAGGGTCTTGAAGCACTTGATCTTGGAACTA 6283
| || ||||| || || || || |||||| || ||||| | |||||| || |
Sbjct 1104 TGAGCATGGAGGATGCATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACACAA 1045
Query 6284 GTGCAGGTTACCCATACGTGGCGCTGGGCATTAAGAAGAGAGATATACTCAA-CAAAGAG 6342
||||||| || |||||| || || ||||| ||||| | || || | | | || |
Sbjct 1044 GTGCAGGATATCCATACAGTGCACTAGGCATCAAGAAAAAGGACATTTTGGATCCAACA- 986
Query 6343 ACTAGAGATGTCTCCAAAATGCAGCAATGCATAGACAAGTACGGGCTCAACCTACCCATG 6402
||| | |||||| ||| ||| | | ||| |||||||| ||| | | |||||
Sbjct 985 ACTCGCGATGTCAGCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTAC 926
Query 6403 GTTACCTATGTGAAGGATGAGCTCAGGTCAAAAGAGAAAGTGAAGAAGGGCAAAAGCCGA 6462
||| ||||| || ||||| || ||| | | || || | ||||| || || ||
Sbjct 925 TCTACTTATGTTAAAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGT 866
Query 6463 CTCATTGAAGCGTCGAGTCTAAATGATTCCGTTGCGATGAGGTGCGCCTTCGGAAATCTC 6522
||||| |||||| || |||||||| || || |||| | || || | ||
Sbjct 865 CTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTT 806
Query 6523 TACAAGGCTTTTCACACAAACCCAGGCACCCTCACGGGGTGTGCAGTTGGGTGCAACCCT 6582
|| | ||||| ||| | || ||||| || |||| || | || ||||||||||||||
Sbjct 805 TATGAAGCTTTCCACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCA 746
Query 6583 GAGACCTTTTGGAGCAAAATCCCGGTCATGATGGACGGAGAGCTTTTTGGCTTCGACTAC 6642
|| || |||||||| | || | | | ||| |||||| | || ||||||
Sbjct 745 GATGTGTTCTGGAGCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTAC 686
Query 6643 ACTGCGTATGACGCCAGTCTCTCCCCTGTCTGGTTC 6678
| | ||||||||| |||||| ||| || ||||||
Sbjct 685 TCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTTC 650
Score = 98.7 bits (108), Expect = 5e-17
Identities = 228/341 (67%), Gaps = 2/341 (1%)
Strand=Plus/Minus
Query 4402 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGTTTGATCCATGGAACGCCG 4461
||||||||||||| ||| | || ||||||||||| ||| | ||| || ||||
Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGCCTAATTATCAGAGGCTCGCCT 2855
Query 4462 GGCACTGGTAAATCACTTGCCACGACTATTATTGGCAGGAAGATCGCTGAGTACGAGAAT 4521
|| ||||| || ||| | || || ||||||| || || || || | | |
Sbjct 2854 GGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTACCAC 2795
Query 4522 AGCGGGGTCTATAGTTTGCCACCTGACCCAGACCACTTTGATGGCTACGCCGAGCAGGCA 4581
| | || ||| || || || ||||||||||||||||| || ||| | |||
Sbjct 2794 TCCAGTGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAGATC 2735
Query 4582 GTTGTAATTATGGATGATCTGCATCAGAACCCAGACGGCAAAGATATGAGCTTGTTTTGT 4641
|| ||||||| || || || ||||||||||| ||||| ||| | ||||||
Sbjct 2734 GTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGT 2675
Query 4642 CAGATGGTTTCCACCACCCCCTTCGTGGTTCCGATGGCTGCTCTCGAGGATAAAGGTAGA 4701
|||||||| ||||| || | || ||||| |||| ||||| |||| ||
Sbjct 2674 CAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGA-GAAGGGAGT 2616
Query 4702 CT-TTTCACCTCCAAATATGTGCTGGCCTCAACAAATGCCA 4741
|| ||||||||||| | |||| | ||||| || || ||||
Sbjct 2615 CTCATTCACCTCCAAGTTTGTGATTGCCTCCACTAACGCCA 2575
Score = 80.6 bits (88), Expect = 1e-11
Identities = 86/114 (75%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 7126 GATATTCATGAGTCCATTCGTTGGACCAAGGATGCTAAATCTACCCAGGATCATGTTAGA 7185
|| ||||| || ||||||||||||||||| ||||| | ||| || ||||| || |
Sbjct 199 GAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCACGTGCGC 140
Query 7186 TCCCTGTGCCTATTGGCCTGGCACTGCGGACAAGAACAGTATGAAGAGTTTCTG 7239
||||| ||| |||| || |||||| ||| |||| |||||||| | ||| ||
Sbjct 139 TCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAGTATGAAAAATTTGTG 86
>seq763
Length=367
Score = 96.9 bits (106), Expect = 2e-16
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 886 GGGTCAAACATCCATTACACTAACATCAACTATTACGAGAACGC---TGCCTCTAACAGC 942
|| || | ||| ||||||||| ||||||||||||| | || | ||| | | ||||
Sbjct 139 GGCTCCACCATTAATTACACTACCATCAACTATTACAAAGACTCCTATGCTGCGA-CAGC 197
Query 943 CTTAACAAGCAGGACTTTACGCAAGACCCTGAGAAGTTTACTCGTCCGGTGGTTGATGTA 1002
| | ||| | | | ||||||||||| |||||| || || || || |
Sbjct 198 GGGTAAA--CAGAGCCTCAAACAAGACCCTGATAAGTTTGCTAACCCTGTCAAAGACATT 255
Query 1003 ATGAAGGAAGCTGCAGTGCCACTCAAAAGTCCATCCGCTGAAGCGTGTGGTTATAGTGAC 1062
| | ||| || | |||||| || ||||||||||||||| |||||||| |||||
Sbjct 256 TTCACTGAAATGGCTGCGCCACTGAAGTCTCCATCCGCTGAAGCTTGTGGTTACAGTGAT 315
Query 1063 AGAGTAGCACAACTGACCCTCGGAAACTCCACCATTACCACTCAAGAGGC 1112
| || |||||||| ||| | || |||||||||||||| || || |||||
Sbjct 316 CGCGTGGCACAACTCACCATTGGGAACTCCACCATTACTACACAGGAGGC 365
>seq4094
Length=3074
Score = 89.7 bits (98), Expect = 2e-14
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 2080 TATTACACCCAGTGGTCTGGGTCCATAGAGTTCACCTTCATGTTTTGCGGGACTTTCATG 2139
|| |||||||| ||||| || || | || ||||||||||||| |||| | || |||
Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749
Query 2140 TCCACGGGCAAGGTTATAATCGCGTACACCCCACCTGGAGGCACAGCCCCCA--CATCGC 2197
| || |||||| | | || || ||||| ||||| |||||| | |||| | ||
Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCG- 1808
Query 2198 GCCGAGAGGCGATGCTGGGGACCCACATAGTTTGGGACTTTGGTCTACAATCCTCGATAA 2257
| ||| || ||| |||| || ||| | | ||||||||||| || ||||| || | |
Sbjct 1809 GGCGA-CCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCA 1867
Query 2258 CCCTTGTTGTCCCCTGGATC 2277
||||||| | || ||||||
Sbjct 1868 CCCTTGTAATACCATGGATC 1887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23554022622772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |