Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_024073.1
Length=7376
Score E
Sequences producing significant alignments: (Bits) Value
seq4094 379 1e-101
seq4083 273 1e-69
seq1 205 4e-49
>seq4094
Length=3074
Score = 379 bits (420), Expect = 1e-101
Identities = 675/966 (70%), Gaps = 39/966 (4%)
Strand=Plus/Plus
Query 394 TAGGACG-TCAAGATACTGACATGGTGTGAAGAGCCTATTGAGCTACGTGGTAGTCCTCC 452
||||||| || | || | ||||||||| |||||| ||||||||||| | || |||||||
Sbjct 14 TAGGACGCTCTA-ATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCC 72
Query 453 GGCCCCTGAATGCGGCTAATCCTAACTCCGGAGCATCCGCCAGTAAGCCCACTGGAAGGG 512
||||||||||||||||||||||||||| ||||||| ||| || || || || |
Sbjct 73 GGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTG 132
Query 513 TGTCGTAATGCGAAAGTCTGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTT 572
|||||||||| | || |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 133 TGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTA 192
Query 573 TACTTATTGTTTGGCTGCTTATGGTGACAA-CTTATAGTTATCATCATA-AGCTACTTGG 630
| ||||| |||||||||||||||||||| | | |||| | | |||| ||||| ||||
Sbjct 193 TTCTTAT--ATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTA-TTGG 249
Query 631 TCTTGCCAACCGGAG-----------AATTATTTGGTTATTTGTTGGTTT-----CATAA 674
| |||| |||| | |||| ||| ||||| ||||||| ||| |
Sbjct 250 ATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCATTA 309
Query 675 AC-CTACAGTCGTATTTTC-CTGTCTTATTAATTGT---TCTCAAAATTAACAACAATGG 729
| || |||| | | || || || ||| ||| | ||||| | | ||| ||||
Sbjct 310 TCACTGAAGTC-TGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACATGG 368
Query 730 GAGCACAAGTGTCAAGGCAAGAGTCGGGGAACCACCAAGCAACATCCATC---GCAAGTG 786
| |||| ||||| | ||| || || ||| || ||| || | | || | |
Sbjct 369 GCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAA--AAC-TCTAACTCAGCTACCG 425
Query 787 GTGGTAGTACCATACACTACACAAACATCAATTATTATAAGGATAGTTATGCTGCAGCTG 846
||| || ||| |||| || | ||| ||||| ||||| ||| ||||| || | |
Sbjct 426 AGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAG 485
Query 847 CTAATAAACA-AGATTTCAGCCAGGACCCATCGAAGTTTACACAACCAGTGGTAGATGTA 905
| ||| || || || || ||||||||| |||||| || | || || ||| |
Sbjct 486 CAGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATC 544
Query 906 TTAAAGGAAACTGCCGTGCCCTTAAAGTCACCATCGGCAGAAGCATGTGGGTATAGTGAC 965
|| | |||| || | ||| ||||| || ||||| || || |||||||| || |||||
Sbjct 545 TTCACTGAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGAT 604
Query 966 AGAGTTGCCCAGTTGACCATCGGCAATTCAACTATCACTACACAGGAAGCAGCTAACATT 1025
| || || || || || || |||||||| || |||||||| || |||||||| |||||
Sbjct 605 CGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATC 664
Query 1026 GTAGTAGGGTATGGTGAATGGCCAGAGTATTTGAGGGATGATGAGGCCACTGCTGTGGAT 1085
|||| || |||||||| ||||| || | ||| ||| |||||||| |||||
Sbjct 665 ATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGAC 724
Query 1086 AAACCAACCAAACCAGATGTTTCTGCCAATCGCTTTTACACATTGCCCTCTAAGAAGTGG 1145
|||||||| ||||||||||| | ||| | |||||||||||| | | || ||||
Sbjct 725 AAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGG 784
Query 1146 GA-AACCAATTCAACAGGGTGGTATTGGAAATTACCCGACGCCCTGTGTGAATTAGGAAT 1204
|| || || ||| |||||||| |||||||| || || | | |||| || |
Sbjct 785 GAGAAGTCATCCAA-GGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGT 843
Query 1205 GTTTGGGCAGAATGCTGTGTACCATTTCCTTTACCGGAGCGGCTGGTTGATACATGTACA 1264
||||| || ||||| || ||| | ||| || ||| || | | || || || ||
Sbjct 844 CTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCA 903
Query 1265 GGCTAATGCTAGTAAATTCCACCAAGGCACCTTGTTAGTTCTTGCTATCCCTGAGTTTGT 1324
| ||||||||||| ||||||||||| | | |||| || |||| |||| |||
Sbjct 904 GTGCAATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGTCGCTGTCCTCCCAGAGTATGT 963
Query 1325 GATTGG 1330
|||||
Sbjct 964 CATTGG 969
Score = 111 bits (122), Expect = 7e-21
Identities = 241/355 (68%), Gaps = 7/355 (2%)
Strand=Plus/Plus
Query 2004 TACTACACTCATTGGAGCGGTTCACTTGAAATTACATTCATGTTTACCGGTTGCTTTATG 2063
|||||||| || ||| || ||||| ||| | || |||||||| ||||| | |||||||
Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749
Query 2064 GCTACAGGTAAAGTGCTGGTGGCTTACTCACCGCCTGGTGGTACCCAACCCA--CATCGA 2121
||||| || || |||| | || ||| |||| || || || || ||||| | ||
Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCG- 1808
Query 2122 GGCTGGACGCCATGTTAGGGACTCATGTTGTGTGGGATTTTGGGCTCCAATCTAGCATAA 2181
||| | ||||||||| || || || || | ||||| |||||||| ||||| | |
Sbjct 1809 GGC-GACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCA 1867
Query 2182 CACTGGTCATACCATGGATTTCCAACAGCCACTACAGGGCAAACATTAGCACTTAT-AGT 2240
| || || ||||||||||| ||||| || ||||| || || | | | | ||
Sbjct 1868 CCCTTGTAATACCATGGATCAGCAACACTCATTACAGAGCGCACGCTCGAGATGGTGTGT 1927
Query 2241 --GATTACTATGCTGCTGGAATCGTCACAATGTGGTATCAAACCAACTATGTGGTGCCAC 2298
|| ||||| || | || | || | || ||||| || || || |||||||| |||
Sbjct 1928 TCGACTACTACACTACAGGTTTGGTTAGCATATGGTACCAGACGAATTATGTGGTTCCAA 1987
Query 2299 CAGGAGCACCAACTCAAGGAAGTATTATTGCTTTGGCAGCTGCACAGCCTAACTT 2353
|| ||||| | | || ||| || || ||||| || || ||| |||||
Sbjct 1988 TTGGGGCACCCAATACAGCCTATATAATAGCATTGGCGGCAGCCCAGAAGAACTT 2042
Score = 86.0 bits (94), Expect = 3e-13
Identities = 273/411 (66%), Gaps = 18/411 (4%)
Strand=Plus/Plus
Query 1463 CCCGCATCAATGGATTAACTTGAGAACCAACAATTGTGCTACTCTGATTCTACCATACGT 1522
||| ||||| |||||||| ||||| |||||||||||||| || | || | || ||| |
Sbjct 1105 CCCACATCAGTGGATTAATTTGAGGACCAACAATTGTGCCACAATAATAGTGCCGTACAT 1164
Query 1523 GAACTGCA-TACCTGCTGATTCTGCTATTAGACACAGT--CCTTGGTCCCTAGTCATTGT 1579
||| ||| |||| ||||||||| | | || || | ||||| || | ||||
Sbjct 1165 AAAC-GCACTACCCTTTGATTCTGCCTTGAACCATTGTAACTTTGGT--CTGCTGGTTGT 1221
Query 1580 GCCAGTTGTACCTTTAGGTTACGCGAGCGGTGCTACTACAATGGTGCCCATTACCGTCTC 1639
||| || || |||| ||| | ||||| || || || | |||||||| || |
Sbjct 1222 GCCTATTAGCCCGTTAGATTATGACCAAGGTGCGACGCCAGTGATCCCCATTACTATCAC 1281
Query 1640 CATTGCGCCCATGTGCTGTGAGTTTAGTGGACTGAGGGGTGCAATTACCCAGGG----CC 1695
| || || ||||| | ||| ||| || || || ||| |||| || || ||
Sbjct 1282 TTTGGCCCCAATGTGTTCTGAATTTGCAGGCCTTAGACAAGCAGTTACGCAAGGGTTTCC 1341
Query 1696 TACCTGTGATGACTGTGCCAGGGAGCAACCAGTTTCTAACTACTGATCGTTTTTG-CTCA 1754
|| ||| | ||| ||| || | ||||| ||| |||| ||||| || | | ||||
Sbjct 1342 TA-CTGAGCTGA---AGCCTGGCACAAACCAATTTTTAACCACTGA-CGATGGCGTCTCA 1396
Query 1755 CCACCAATGCTGCCAGGTTTTGATGAAACACCCATAATGCACATACCAGGAGAGGTAGTT 1814
|||| || |||||| ||| | || || || || ||||| || || ||
Sbjct 1397 GCACCCATTCTGCCAAACTTTCACCCCACCCCGTGTATCCATATACCCGGTGAAGTTAGA 1456
Query 1815 AACATGTTAGAGATCATG-CAAGTGGAATCTATTCTGGAAGTCAACAATGT 1864
||| || ||||| | ||| || ||||| | ||| | || |||||||||||
Sbjct 1457 AACTTGCTAGAGCT-ATGCCAGGTGGAGACCATTTTAGAGGTCAACAATGT 1506
>seq4083
Length=3246
Score = 273 bits (302), Expect = 1e-69
Identities = 1258/1966 (64%), Gaps = 65/1966 (3%)
Strand=Plus/Minus
Query 5238 TACATAATTTACAAGTTATTTGCTGGATTCCAGGGAGCCTATTCCGGCATGCCCCAGCCA 5297
||| | || |||||||| || || || || || ||||| ||||||||| ||| ||| |
Sbjct 2035 TACGTCATCTACAAGTTGTTCGCCGGTTTTCAAGGAGCATATTCCGGCGCCCCCAAGC-A 1977
Query 5298 AAGCCTAAAGTACCCACAATTAGACAAG-CAAAAGTGCAGGGACCCAACTTTGAGTTTGC 5356
|| || ||| | ||| | || | ||| |||||||| || | ||| || || ||
Sbjct 1976 AACACTCAAGAAACCAGTGCTGCGCACGGCAACTGTGCAGGGGCCGAGCTTGGACTTCGC 1917
Query 5357 TGTGTCAATGATGAAGAGAAATGCTAGCACCGTGAAAACAGGGAATGGAGAATTCACCAT 5416
| || | | | ||| || ||| || |||| | | || | || || ||
Sbjct 1916 CCTATCTCTACTTAGGAGGAACATTAGGCAGGTCCAAACCGACCAGGGCCACTTTACAAT 1857
Query 5417 GCTCGGAGTTTATGATCGCTGGGCAGTGTTACCTAGACACGCAAAACCAGGAGAAACCAT 5476
| | ||||| || |||| ||| ||| | || |||||| | |||||||| | |||||
Sbjct 1856 GTTAGGAGTGCGAGACCGCTTGGCTGTGCTCCCCAGACACTCCCAACCAGGAAAGACCAT 1797
Query 5477 CATCATGGATGATGCTGAGGTTAAGATCTTGGATGCGAAGGAGCTTACCGATCAACAAGG 5536
| | || | || ||| || | ||||| |||| | || |||||||
Sbjct 1796 CTGGGTTGAACACAAATTAGTGAAGGTCGTAGATGCTGTGGAGTTAGTAGACGAACAAGG 1737
Query 5537 TGTCAATTTAGAACTTACTTTAGTAAAATTAGACAGAAATGAGAAATTCAGAGACATCAG 5596
|| || ||||| || || | |||| | || | || || ||||| ||||||||||
Sbjct 1736 GGTTAACTTAGAGCTCACACTGGTAACGCTTGATACTAACGAAAAATTTAGAGACATCAC 1677
Query 5597 GGGGTTCATCCCT-AAAGAAG-AGTC-TGAGATTGGTGATGCCATCCTGGCTATGAACAC 5653
| ||||| || ||| || |||| || | ||||||||| | | ||| || ||
Sbjct 1676 AAGATTCATACCAGAAACAATTAGTCCTGCTA---GTGATGCCACTTTAGTTATAAATAC 1620
Query 5654 TAGCAAGTTTCCAAATATGTTCATTCCAGTAGGGCAGGTTACCGAATATGGTTTCCTGAA 5713
| | | || | |||||| | ||||| || | || | | ||||| || ||||
Sbjct 1619 TGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAA 1560
Query 5714 CCTGAGTGGTGTCCCTACACACCGTATGCTCATGTACAATTTCCCAACACGAGCTGGGCA 5773
||| |||||| || || ||| | | | |||||||||||||||||| ||| || ||
Sbjct 1559 CCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACA 1500
Query 5774 GTGTGGTGGAATACTGATGGCAACAGGAAAGGTACTTGGCATTCATGTTGGTGGTAATGG 5833
||||||||| | ||| || || || || |||| || || ||||||| || ||
Sbjct 1499 GTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGG 1440
Query 5834 CCATCAAGGGTTTGCCGCCGCCTTACTCAGACACTACTTTAATGATGAACAGGGTGAAAT 5893
||||| || ||| ||| | || |||||| |||||| ||||| ||
Sbjct 1439 TAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGAACAAGGTGAGAT 1380
Query 5894 CGAGTGGATGGAAACAAACAAGGAGAGTGGGTACCCCATTATTAATGCTCCAAGCAAGAC 5953
| | |||||| | | ||||| || | ||| | || || | || | ||
Sbjct 1379 CCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCAC 1320
Query 5954 AAAACTTGAGCCCAGTGTTTTTCATGATATCTTTGAAGGTGTGAAGGAACCTGCGGTGCT 6013
||| ||||| || ||||| ||||| ||| | || ||||| || || || || |||||
Sbjct 1319 AAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCT 1260
Query 6014 GAACAAGAAAGATCCCAGACTCAAGGTAGATTTTGAAGAGGCCATCTTCTCCAAGTATGT 6073
|| | ||||| || || || | || || |||||| |||| | || || || || ||
Sbjct 1259 GACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGT 1200
Query 6074 GGGAAATGTGAACACCCAT-ATG-----GATGAGTATATGAAGGAGGCAGTGGATCACTA 6127
||| |||||| | | ||| || |||| | | |||||||| | || ||
Sbjct 1199 GGG------GAACACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGCGGCCTTACATTA 1146
Query 6128 TGCAGGACAATTGCTAACACTT-GACATTGACACCAAGCCAC--TGCTGCTAGAGGAGGC 6184
||| ||| | | | || || || || | |||| ||| || | ||||| ||
Sbjct 1145 TGCCAACCAACT-CAAGCAGTTAGATATCAAGACCA--CCAAGATGAGCATGGAGGATGC 1089
Query 6185 AGTCTATGGAACTGATGGTTTGGAAGCACTTGAT-TTAACAACTAGTGCAGGATACCCTT 6243
| || || || || ||||||| | ||| || ||| | ||||||||||| || |
Sbjct 1088 ATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACA-CAAGTGCAGGATATCCAT 1030
Query 6244 ATGTAACAATGGGGGTGAAGAAGAGAGACATCATTTCAA---AACAGACCCGAGACCTGA 6300
| || | || | ||||| | ||||| ||| | |||| || || || | |
Sbjct 1029 ACAGTGCACTAGGCATCAAGAAAAAGGACAT--TTTGGATCCAACA-ACTCGCGATGTCA 973
Query 6301 CCAAGCTAAAGGAATGTTTGGACAAATATGGTCTCAACCTACCAATGGTGACATATGTCA 6360
|||| | || | ||||||| ||||| | | ||||| || ||||| |
Sbjct 972 GCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTA 913
Query 6361 AAGATGAGCTCAGATCCAAGGAAAAAGTGGAAAAGGGCAAGTCGCGCTTGATTGAAGCGT 6420
||||||| || || ||| || || | | || || ||||| || | || ||||||
Sbjct 912 AAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGA 853
Query 6421 CGAGTCTGAATGATTCCGTTGCAATGAGGCAGACCTTTGGCAATCTATACAGGACTTTTC 6480
|| || ||||| || || |||| ||| ||||| | || || |||| |
Sbjct 852 GCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCC 793
Query 6481 ACAAGAATCCAGGAGTGGTGACGGGAAGTGCCGTCGGATGTGATCCAGATCTGTTTTGGA 6540
|| |||||||| | || || || || || || | |||||| |||| ||||
Sbjct 792 ACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGA 733
Query 6541 GCAAGATACCAGTGATGCTTGATGGGGAGCTGTTTGCCTTTGATTACACAGGGTATGACG 6600
||||| ||||| | | || || ||| || || ||||| ||| | ||||||||||
Sbjct 732 GCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACG 673
Query 6601 CTAGTTTGAGCCCAGTTTGGTTCCTAGCACTCAA---AGTCTTACTTGAGAAGCTTGGTT 6657
||||| | |||||||| |||||| || || | |||| | | || | |||| |
Sbjct 672 CTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAA---TTGGAT 616
Query 6658 ATGATTATCAGGAAAC-CAG-GTAT---ATAGATTACCTGTGTAATTCTTATCATCTTTA 6712
| || | | || ||| || | ||||| | | | | ||||| | ||
Sbjct 615 AC-----TCCGAAGACGCAGTGTCTCTCATAGAAGGGATCAATCACACCCATCATGTGTA 561
Query 6713 CAAAGACAAACATTATTTTGTGAGAGGAGGAATGCCCTCAGGGTGTTCAGGAACGAGCAT 6772
| | ||| ||||| ||| || |||||||||||||| || ||||| || |||
Sbjct 560 CCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCAT 501
Query 6773 CTTCAACTCAATGATTAACAACATCATAATTAGAACCTTGTTGTTGAAGGTATATAAAAA 6832
|||||||| ||||| ||||| ||||| |||||||| | || | || || |||
Sbjct 500 TTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGG 441
Query 6833 TATCGATCTGGACAAATTTAGGATGATTGCGTATGGTGACGACGTGATTGCGTCCTATCC 6892
|| ||||| || || | | ||| | || || || || || ||| | || || ||
Sbjct 440 GATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCC 381
Query 6893 ATATCCAATCGA-TG-CAGGCCTACTTGCTAAGG-CGGGAAAGGAGTATGGTCTGACAAT 6949
| ||||| || || | || | ||| ||| | || |||||||||||||| || ||
Sbjct 380 CTTCCCAATTGACTGTCTGG---AGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTAT 324
Query 6950 GACACCAGCTGACAAGAGCGCGGAGTTCAACAATGTGACCTGGGAGAATGTGACCTTTTT 7009
||| || || |||||| | || || | || || |||||||||| || || ||
Sbjct 323 GACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTTCTT 264
Query 7010 GAAAAGG---TTCTTCCGCGCAGATGAACAGTACCCCTTCTTGGTTCATCCAGTGATGCC 7066
||| || ||||| | | ||| | || | ||| || | | || || ||||||
Sbjct 263 GAAGAGAGGATTCTTGC---CTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCC 207
Query 7067 AATGAAGGAGATTCATGAGTCCATTAGATGGACCAAAGACCCACGCAACACGCAGGAACA 7126
||||| ||||||||| || |||||| | ||||||||||| |||| | || || || ||
Sbjct 206 AATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCA 147
Query 7127 CGTGAGGTCTCTGTGCCAGCTAGCCTGGCACAATGG---AGAGGAG 7169
|||| | || || ||| |||| |||||||| || |||||||
Sbjct 146 CGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAG 101
Score = 251 bits (278), Expect = 3e-63
Identities = 461/671 (69%), Gaps = 6/671 (1%)
Strand=Plus/Minus
Query 4020 GATTCCTGGCTCAAGAAGTTTACTGAAATGACTAATGCCGCCAAAGGTTTAGAGTGGATT 4079
|| || ||| | |||||||| | || | | | |||||| || || | ||||||||
Sbjct 3244 GACTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATC 3185
Query 4080 GCACAAAAGATTCAG-AAATTTATTGAGTGGCTGAAGATTAAAATCCTACCTGAAGTGAA 4138
| ||| | | |||| |||||||| || ||||| ||| |||||| |||| | | ||
Sbjct 3184 TC-CAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAA 3126
Query 4139 GGAAAAACATGAGTTTCTGACTCGCCTAAGACAGCTGCCCTTATTGGAGTCTCAAATTGC 4198
|| ||| |||||||| | |||| || || |||||||||||| |||||| |
Sbjct 3125 AGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTC 3066
Query 4199 TACTTTAGAACAGAGTGCCCCATCTCAAAGTGACCAGGAACAGCTTTTTTCTAATGTGCA 4258
|| | | |||||| || | || || |||| || | | ||| || |||
Sbjct 3065 TAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTC 3006
Query 4259 GTATTTCGCTCATTACTGCAGAAAGTACGCACCTTTGTATGCTGCTGAAGCCAAAAGGGT 4318
|| | || || | |||| | || | | ||| | ||||| | ||||| || |||||
Sbjct 3005 TTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGT 2946
Query 4319 CTACCAGCTAGAAAAGCGAGTTAACAATTACGTACAGTTCAAGTCCAAATGCCGCATTGA 4378
||| ||||||||| || | || |||||| | ||||||||| |||| ||| |||||
Sbjct 2945 GTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGA 2886
Query 4379 ACCTGTATGTTTGTTACTCCATGGCACACCAGGGGCAGGCAAGTCTGTAGCAACTAATCT 4438
||||||||| | | || ||| | || || | || ||||| | ||||| |
Sbjct 2885 ACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGAT 2826
Query 4439 AATTGGAAGAGCAATTGCTGAGAAACTAAACAGTTCAGTAT--ATTCATTGCCACCAGAT 4496
|||| ||||| || || || || | || | |||| | |||| || || |||||
Sbjct 2825 TATTGCTAGAGCCATAGCAGACAAGT--ACCACTCCAGTGTGTATTCCTTACCTCCAGAC 2768
Query 4497 CCAGACCACTTTGACGGCTACAAACAACAAGCTGTGGTTATTATGGATGATTTGTGTCAA 4556
||||||||||||||||| ||||||||||| || | ||||||| || | || |||
Sbjct 2767 CCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAA 2708
Query 4557 AATCCAGACGGAAAAGATGTCTCACTATTTTGTCAGATGGTGTCTAGTGTTGATTTTGTG 4616
|| |||||||| ||||| | |||||||||||||||||||| || | || |||||| |
Sbjct 2707 AACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATA 2648
Query 4617 CCACCTATGGCTGCACTAGAAGAGAAAGGAATCTTATTCACTTCACCTTTTGTGCTGGCT 4676
|| |||||||| | || || ||||| ||| ||| |||||| || |||||| | ||
Sbjct 2647 CCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCC 2588
Query 4677 TCTACAAATGC 4687
|| || || ||
Sbjct 2587 TCCACTAACGC 2577
>seq1
Length=805
Score = 205 bits (226), Expect = 4e-49
Identities = 456/675 (68%), Gaps = 26/675 (4%)
Strand=Plus/Plus
Query 6513 GTCGGATGTGATCCAGATCTGTTTTGGAGCAAGATACCAGTGATGCTTGATGGGGAGCTG 6572
|| || ||| | || || ||||||||||||| |||| | |||| |||| |||
Sbjct 43 GTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTC 102
Query 6573 TTTGCCTTTGATTACACAGGGTATGACGCTAGTTTGAGCCCAGTTTGGTTCCTAGCACTC 6632
||||||||||| ||| |||| ||||| |||||| | ||||| || |||||| || |
Sbjct 103 TTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTTTA 162
Query 6633 AAAGTC---TTACTTGAGAAGCTTGGTTATGATTATCAGGAAACCAGGTAT---ATAGAT 6686
|||| |||| |||| |||| ||| | |||| || || |||||
Sbjct 163 GAAGTTGTGTTACGGGAGA---TTGGGTAT---TCAGAGGAGGCCGTGTCCCTAATAGAA 216
Query 6687 TACCTGTGTAATTCTTATCATCTTTACAAAGACAAACATTATTTTGTGAGAGGAGGAATG 6746
| | | | ||| | || ||||| || | ||| || ||||||
Sbjct 217 GGGATCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATG 276
Query 6747 CCCTCAGGGTGTTCAGGAACGAGCATCTTCAACTCAATGATTAACAACATCATAATTAGA 6806
|||||||| ||||| || || |||||| || |||||||| ||||||||||| || |||
Sbjct 277 CCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGA 336
Query 6807 ACCTTGTTGTTGAAGGTATATAAAAATATCGATCTGGACAAATTTAGGATGATTGCGTAT 6866
||| | ||| | || | ||| || || ||||| | || | ||| | || |||
Sbjct 337 ACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTAT 396
Query 6867 GGTGACGACGTGATTGCGTCCTATCCATATCCAATCGATGCAGGCCT--ACTTG-CTAAG 6923
|| ||||| ||| | || || || | ||| || ||| |||| | ||| |||||
Sbjct 397 GGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATT---GCCTTGAGTTGGCTAAG 453
Query 6924 GCGGGAAAGGAGTATGGTCTGACAATGACACCAGCTGACAAGAGCGCGGAGTT-CAACAA 6982
| || || ||||||||| |||| ||||| || || ||||| | | | ||| ||| |
Sbjct 454 ACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAA-ATCACCCTGTTTCAATGA 512
Query 6983 TGTGACCTGGGAGAATGTGACCTTTTTGAAAAGG---TTCTTCCGCGCAGATGAACAGTA 7039
|| || ||||| |||| ||||| |||| || ||||| | |||| | || |
Sbjct 513 AGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGC---CAGACCACCAATT 569
Query 7040 CCCCTTCTTGGTTCATCCAGTGATGCCAATGAAGGAGATTCATGAGTCCATTAGATGGAC 7099
|| ||||| |||| || |||||| |||| ||||| ||||| |||||| |||||||
Sbjct 570 TCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGAC 629
Query 7100 CAAAGACCCACGCAACACGCAGGAACACGTGAGGTCTCTGTGCCAGCTAGCCTGGCACAA 7159
|||||| | |||||||| || || |||||| | || ||||| | | | || ||||||||
Sbjct 630 TAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAA 689
Query 7160 TGGAGAGGAGGTATA 7174
||| |||| | |||
Sbjct 690 TGGTAAGGATGAATA 704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23486825981680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |