Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_024073.1 Length=7376 Score E Sequences producing significant alignments: (Bits) Value seq4094 379 1e-101 seq4083 273 1e-69 seq1 205 4e-49 >seq4094 Length=3074 Score = 379 bits (420), Expect = 1e-101 Identities = 675/966 (70%), Gaps = 39/966 (4%) Strand=Plus/Plus Query 394 TAGGACG-TCAAGATACTGACATGGTGTGAAGAGCCTATTGAGCTACGTGGTAGTCCTCC 452 ||||||| || | || | ||||||||| |||||| ||||||||||| | || ||||||| Sbjct 14 TAGGACGCTCTA-ATGCGGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCC 72 Query 453 GGCCCCTGAATGCGGCTAATCCTAACTCCGGAGCATCCGCCAGTAAGCCCACTGGAAGGG 512 ||||||||||||||||||||||||||| ||||||| ||| || || || || | Sbjct 73 GGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTG 132 Query 513 TGTCGTAATGCGAAAGTCTGGAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTGTTT 572 |||||||||| | || |||| ||||||||||||||||||||||||||||||||||| || Sbjct 133 TGTCGTAATGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTA 192 Query 573 TACTTATTGTTTGGCTGCTTATGGTGACAA-CTTATAGTTATCATCATA-AGCTACTTGG 630 | ||||| |||||||||||||||||||| | | |||| | | |||| ||||| |||| Sbjct 193 TTCTTAT--ATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTA-TTGG 249 Query 631 TCTTGCCAACCGGAG-----------AATTATTTGGTTATTTGTTGGTTT-----CATAA 674 | |||| |||| | |||| ||| ||||| ||||||| ||| | Sbjct 250 ATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCATTA 309 Query 675 AC-CTACAGTCGTATTTTC-CTGTCTTATTAATTGT---TCTCAAAATTAACAACAATGG 729 | || |||| | | || || || ||| ||| | ||||| | | ||| |||| Sbjct 310 TCACTGAAGTC-TGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACATGG 368 Query 730 GAGCACAAGTGTCAAGGCAAGAGTCGGGGAACCACCAAGCAACATCCATC---GCAAGTG 786 | |||| ||||| | ||| || || ||| || ||| || | | || | | Sbjct 369 GCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAA--AAC-TCTAACTCAGCTACCG 425 Query 787 GTGGTAGTACCATACACTACACAAACATCAATTATTATAAGGATAGTTATGCTGCAGCTG 846 ||| || ||| |||| || | ||| ||||| ||||| ||| ||||| || | | Sbjct 426 AGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAG 485 Query 847 CTAATAAACA-AGATTTCAGCCAGGACCCATCGAAGTTTACACAACCAGTGGTAGATGTA 905 | ||| || || || || ||||||||| |||||| || | || || ||| | Sbjct 486 CAGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATC 544 Query 906 TTAAAGGAAACTGCCGTGCCCTTAAAGTCACCATCGGCAGAAGCATGTGGGTATAGTGAC 965 || | |||| || | ||| ||||| || ||||| || || |||||||| || ||||| Sbjct 545 TTCACTGAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGAT 604 Query 966 AGAGTTGCCCAGTTGACCATCGGCAATTCAACTATCACTACACAGGAAGCAGCTAACATT 1025 | || || || || || || |||||||| || |||||||| || |||||||| ||||| Sbjct 605 CGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATC 664 Query 1026 GTAGTAGGGTATGGTGAATGGCCAGAGTATTTGAGGGATGATGAGGCCACTGCTGTGGAT 1085 |||| || |||||||| ||||| || | ||| ||| |||||||| ||||| Sbjct 665 ATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGAC 724 Query 1086 AAACCAACCAAACCAGATGTTTCTGCCAATCGCTTTTACACATTGCCCTCTAAGAAGTGG 1145 |||||||| ||||||||||| | ||| | |||||||||||| | | || |||| Sbjct 725 AAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGG 784 Query 1146 GA-AACCAATTCAACAGGGTGGTATTGGAAATTACCCGACGCCCTGTGTGAATTAGGAAT 1204 || || || ||| |||||||| |||||||| || || | | |||| || | Sbjct 785 GAGAAGTCATCCAA-GGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGT 843 Query 1205 GTTTGGGCAGAATGCTGTGTACCATTTCCTTTACCGGAGCGGCTGGTTGATACATGTACA 1264 ||||| || ||||| || ||| | ||| || ||| || | | || || || || Sbjct 844 CTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCA 903 Query 1265 GGCTAATGCTAGTAAATTCCACCAAGGCACCTTGTTAGTTCTTGCTATCCCTGAGTTTGT 1324 | ||||||||||| ||||||||||| | | |||| || |||| |||| ||| Sbjct 904 GTGCAATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGTCGCTGTCCTCCCAGAGTATGT 963 Query 1325 GATTGG 1330 ||||| Sbjct 964 CATTGG 969 Score = 111 bits (122), Expect = 7e-21 Identities = 241/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 2004 TACTACACTCATTGGAGCGGTTCACTTGAAATTACATTCATGTTTACCGGTTGCTTTATG 2063 |||||||| || ||| || ||||| ||| | || |||||||| ||||| | ||||||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2064 GCTACAGGTAAAGTGCTGGTGGCTTACTCACCGCCTGGTGGTACCCAACCCA--CATCGA 2121 ||||| || || |||| | || ||| |||| || || || || ||||| | || Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCG- 1808 Query 2122 GGCTGGACGCCATGTTAGGGACTCATGTTGTGTGGGATTTTGGGCTCCAATCTAGCATAA 2181 ||| | ||||||||| || || || || | ||||| |||||||| ||||| | | Sbjct 1809 GGC-GACCGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCA 1867 Query 2182 CACTGGTCATACCATGGATTTCCAACAGCCACTACAGGGCAAACATTAGCACTTAT-AGT 2240 | || || ||||||||||| ||||| || ||||| || || | | | | || Sbjct 1868 CCCTTGTAATACCATGGATCAGCAACACTCATTACAGAGCGCACGCTCGAGATGGTGTGT 1927 Query 2241 --GATTACTATGCTGCTGGAATCGTCACAATGTGGTATCAAACCAACTATGTGGTGCCAC 2298 || ||||| || | || | || | || ||||| || || || |||||||| ||| Sbjct 1928 TCGACTACTACACTACAGGTTTGGTTAGCATATGGTACCAGACGAATTATGTGGTTCCAA 1987 Query 2299 CAGGAGCACCAACTCAAGGAAGTATTATTGCTTTGGCAGCTGCACAGCCTAACTT 2353 || ||||| | | || ||| || || ||||| || || ||| ||||| Sbjct 1988 TTGGGGCACCCAATACAGCCTATATAATAGCATTGGCGGCAGCCCAGAAGAACTT 2042 Score = 86.0 bits (94), Expect = 3e-13 Identities = 273/411 (66%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 1463 CCCGCATCAATGGATTAACTTGAGAACCAACAATTGTGCTACTCTGATTCTACCATACGT 1522 ||| ||||| |||||||| ||||| |||||||||||||| || | || | || ||| | Sbjct 1105 CCCACATCAGTGGATTAATTTGAGGACCAACAATTGTGCCACAATAATAGTGCCGTACAT 1164 Query 1523 GAACTGCA-TACCTGCTGATTCTGCTATTAGACACAGT--CCTTGGTCCCTAGTCATTGT 1579 ||| ||| |||| ||||||||| | | || || | ||||| || | |||| Sbjct 1165 AAAC-GCACTACCCTTTGATTCTGCCTTGAACCATTGTAACTTTGGT--CTGCTGGTTGT 1221 Query 1580 GCCAGTTGTACCTTTAGGTTACGCGAGCGGTGCTACTACAATGGTGCCCATTACCGTCTC 1639 ||| || || |||| ||| | ||||| || || || | |||||||| || | Sbjct 1222 GCCTATTAGCCCGTTAGATTATGACCAAGGTGCGACGCCAGTGATCCCCATTACTATCAC 1281 Query 1640 CATTGCGCCCATGTGCTGTGAGTTTAGTGGACTGAGGGGTGCAATTACCCAGGG----CC 1695 | || || ||||| | ||| ||| || || || ||| |||| || || || Sbjct 1282 TTTGGCCCCAATGTGTTCTGAATTTGCAGGCCTTAGACAAGCAGTTACGCAAGGGTTTCC 1341 Query 1696 TACCTGTGATGACTGTGCCAGGGAGCAACCAGTTTCTAACTACTGATCGTTTTTG-CTCA 1754 || ||| | ||| ||| || | ||||| ||| |||| ||||| || | | |||| Sbjct 1342 TA-CTGAGCTGA---AGCCTGGCACAAACCAATTTTTAACCACTGA-CGATGGCGTCTCA 1396 Query 1755 CCACCAATGCTGCCAGGTTTTGATGAAACACCCATAATGCACATACCAGGAGAGGTAGTT 1814 |||| || |||||| ||| | || || || || ||||| || || || Sbjct 1397 GCACCCATTCTGCCAAACTTTCACCCCACCCCGTGTATCCATATACCCGGTGAAGTTAGA 1456 Query 1815 AACATGTTAGAGATCATG-CAAGTGGAATCTATTCTGGAAGTCAACAATGT 1864 ||| || ||||| | ||| || ||||| | ||| | || ||||||||||| Sbjct 1457 AACTTGCTAGAGCT-ATGCCAGGTGGAGACCATTTTAGAGGTCAACAATGT 1506 >seq4083 Length=3246 Score = 273 bits (302), Expect = 1e-69 Identities = 1258/1966 (64%), Gaps = 65/1966 (3%) Strand=Plus/Minus Query 5238 TACATAATTTACAAGTTATTTGCTGGATTCCAGGGAGCCTATTCCGGCATGCCCCAGCCA 5297 ||| | || |||||||| || || || || || ||||| ||||||||| ||| ||| | Sbjct 2035 TACGTCATCTACAAGTTGTTCGCCGGTTTTCAAGGAGCATATTCCGGCGCCCCCAAGC-A 1977 Query 5298 AAGCCTAAAGTACCCACAATTAGACAAG-CAAAAGTGCAGGGACCCAACTTTGAGTTTGC 5356 || || ||| | ||| | || | ||| |||||||| || | ||| || || || Sbjct 1976 AACACTCAAGAAACCAGTGCTGCGCACGGCAACTGTGCAGGGGCCGAGCTTGGACTTCGC 1917 Query 5357 TGTGTCAATGATGAAGAGAAATGCTAGCACCGTGAAAACAGGGAATGGAGAATTCACCAT 5416 | || | | | ||| || ||| || |||| | | || | || || || Sbjct 1916 CCTATCTCTACTTAGGAGGAACATTAGGCAGGTCCAAACCGACCAGGGCCACTTTACAAT 1857 Query 5417 GCTCGGAGTTTATGATCGCTGGGCAGTGTTACCTAGACACGCAAAACCAGGAGAAACCAT 5476 | | ||||| || |||| ||| ||| | || |||||| | |||||||| | ||||| Sbjct 1856 GTTAGGAGTGCGAGACCGCTTGGCTGTGCTCCCCAGACACTCCCAACCAGGAAAGACCAT 1797 Query 5477 CATCATGGATGATGCTGAGGTTAAGATCTTGGATGCGAAGGAGCTTACCGATCAACAAGG 5536 | | || | || ||| || | ||||| |||| | || ||||||| Sbjct 1796 CTGGGTTGAACACAAATTAGTGAAGGTCGTAGATGCTGTGGAGTTAGTAGACGAACAAGG 1737 Query 5537 TGTCAATTTAGAACTTACTTTAGTAAAATTAGACAGAAATGAGAAATTCAGAGACATCAG 5596 || || ||||| || || | |||| | || | || || ||||| |||||||||| Sbjct 1736 GGTTAACTTAGAGCTCACACTGGTAACGCTTGATACTAACGAAAAATTTAGAGACATCAC 1677 Query 5597 GGGGTTCATCCCT-AAAGAAG-AGTC-TGAGATTGGTGATGCCATCCTGGCTATGAACAC 5653 | ||||| || ||| || |||| || | ||||||||| | | ||| || || Sbjct 1676 AAGATTCATACCAGAAACAATTAGTCCTGCTA---GTGATGCCACTTTAGTTATAAATAC 1620 Query 5654 TAGCAAGTTTCCAAATATGTTCATTCCAGTAGGGCAGGTTACCGAATATGGTTTCCTGAA 5713 | | | || | |||||| | ||||| || | || | | ||||| || |||| Sbjct 1619 TGAACATATGCCCAGTATGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAA 1560 Query 5714 CCTGAGTGGTGTCCCTACACACCGTATGCTCATGTACAATTTCCCAACACGAGCTGGGCA 5773 ||| |||||| || || ||| | | | |||||||||||||||||| ||| || || Sbjct 1559 CCTTAGTGGTAAGCCCACTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACA 1500 Query 5774 GTGTGGTGGAATACTGATGGCAACAGGAAAGGTACTTGGCATTCATGTTGGTGGTAATGG 5833 ||||||||| | ||| || || || || |||| || || ||||||| || || Sbjct 1499 GTGTGGTGGTGTTGTGACAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGG 1440 Query 5834 CCATCAAGGGTTTGCCGCCGCCTTACTCAGACACTACTTTAATGATGAACAGGGTGAAAT 5893 ||||| || ||| ||| | || |||||| |||||| ||||| || Sbjct 1439 TAGGCAAGGTTTCTGCGCTGCCCTGAAGAGGGGATACTTTTGCAGTGAACAAGGTGAGAT 1380 Query 5894 CGAGTGGATGGAAACAAACAAGGAGAGTGGGTACCCCATTATTAATGCTCCAAGCAAGAC 5953 | | |||||| | | ||||| || | ||| | || || | || | || Sbjct 1379 CCAATGGATGAAGCCCAACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCAC 1320 Query 5954 AAAACTTGAGCCCAGTGTTTTTCATGATATCTTTGAAGGTGTGAAGGAACCTGCGGTGCT 6013 ||| ||||| || ||||| ||||| ||| | || ||||| || || || || ||||| Sbjct 1319 AAAGCTTGAACCAAGTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCT 1260 Query 6014 GAACAAGAAAGATCCCAGACTCAAGGTAGATTTTGAAGAGGCCATCTTCTCCAAGTATGT 6073 || | ||||| || || || | || || |||||| |||| | || || || || || Sbjct 1259 GACTAGTAAAGACCCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGT 1200 Query 6074 GGGAAATGTGAACACCCAT-ATG-----GATGAGTATATGAAGGAGGCAGTGGATCACTA 6127 ||| |||||| | | ||| || |||| | | |||||||| | || || Sbjct 1199 GGG------GAACACGCTTCATGAACCCGACGAGTTTGTCAAGGAGGCGGCCTTACATTA 1146 Query 6128 TGCAGGACAATTGCTAACACTT-GACATTGACACCAAGCCAC--TGCTGCTAGAGGAGGC 6184 ||| ||| | | | || || || || | |||| ||| || | ||||| || Sbjct 1145 TGCCAACCAACT-CAAGCAGTTAGATATCAAGACCA--CCAAGATGAGCATGGAGGATGC 1089 Query 6185 AGTCTATGGAACTGATGGTTTGGAAGCACTTGAT-TTAACAACTAGTGCAGGATACCCTT 6243 | || || || || ||||||| | ||| || ||| | ||||||||||| || | Sbjct 1088 ATGTTACGGCACAGAGAACCTGGAAGCTATAGATCTTCACA-CAAGTGCAGGATATCCAT 1030 Query 6244 ATGTAACAATGGGGGTGAAGAAGAGAGACATCATTTCAA---AACAGACCCGAGACCTGA 6300 | || | || | ||||| | ||||| ||| | |||| || || || | | Sbjct 1029 ACAGTGCACTAGGCATCAAGAAAAAGGACAT--TTTGGATCCAACA-ACTCGCGATGTCA 973 Query 6301 CCAAGCTAAAGGAATGTTTGGACAAATATGGTCTCAACCTACCAATGGTGACATATGTCA 6360 |||| | || | ||||||| ||||| | | ||||| || ||||| | Sbjct 972 GCAAGATGAAATTCTACATGGACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTA 913 Query 6361 AAGATGAGCTCAGATCCAAGGAAAAAGTGGAAAAGGGCAAGTCGCGCTTGATTGAAGCGT 6420 ||||||| || || ||| || || | | || || ||||| || | || |||||| Sbjct 912 AAGATGAACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGA 853 Query 6421 CGAGTCTGAATGATTCCGTTGCAATGAGGCAGACCTTTGGCAATCTATACAGGACTTTTC 6480 || || ||||| || || |||| ||| ||||| | || || |||| | Sbjct 852 GCAGCCTAAATGACTCAGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCC 793 Query 6481 ACAAGAATCCAGGAGTGGTGACGGGAAGTGCCGTCGGATGTGATCCAGATCTGTTTTGGA 6540 || |||||||| | || || || || || || | |||||| |||| |||| Sbjct 792 ACGCCAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGA 733 Query 6541 GCAAGATACCAGTGATGCTTGATGGGGAGCTGTTTGCCTTTGATTACACAGGGTATGACG 6600 ||||| ||||| | | || || ||| || || ||||| ||| | |||||||||| Sbjct 732 GCAAGTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACG 673 Query 6601 CTAGTTTGAGCCCAGTTTGGTTCCTAGCACTCAA---AGTCTTACTTGAGAAGCTTGGTT 6657 ||||| | |||||||| |||||| || || | |||| | | || | |||| | Sbjct 672 CTAGTCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAA---TTGGAT 616 Query 6658 ATGATTATCAGGAAAC-CAG-GTAT---ATAGATTACCTGTGTAATTCTTATCATCTTTA 6712 | || | | || ||| || | ||||| | | | | ||||| | || Sbjct 615 AC-----TCCGAAGACGCAGTGTCTCTCATAGAAGGGATCAATCACACCCATCATGTGTA 561 Query 6713 CAAAGACAAACATTATTTTGTGAGAGGAGGAATGCCCTCAGGGTGTTCAGGAACGAGCAT 6772 | | ||| ||||| ||| || |||||||||||||| || ||||| || ||| Sbjct 560 CCGCAATAAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCAT 501 Query 6773 CTTCAACTCAATGATTAACAACATCATAATTAGAACCTTGTTGTTGAAGGTATATAAAAA 6832 |||||||| ||||| ||||| ||||| |||||||| | || | || || ||| Sbjct 500 TTTCAACTCGATGATCAACAATATCATTATTAGAACACTCCTGATTAAAACATTCAAAGG 441 Query 6833 TATCGATCTGGACAAATTTAGGATGATTGCGTATGGTGACGACGTGATTGCGTCCTATCC 6892 || ||||| || || | | ||| | || || || || || ||| | || || || Sbjct 440 GATAGATCTAGATGAACTGAACATGGTGGCCTACGGGGATGATGTGTTGGCTAGTTACCC 381 Query 6893 ATATCCAATCGA-TG-CAGGCCTACTTGCTAAGG-CGGGAAAGGAGTATGGTCTGACAAT 6949 | ||||| || || | || | ||| ||| | || |||||||||||||| || || Sbjct 380 CTTCCCAATTGACTGTCTGG---AGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTAT 324 Query 6950 GACACCAGCTGACAAGAGCGCGGAGTTCAACAATGTGACCTGGGAGAATGTGACCTTTTT 7009 ||| || || |||||| | || || | || || |||||||||| || || || Sbjct 323 GACCCCTGCCGACAAGTCACCCTGCTTTAATGAGGTTACATGGGAGAATGCCACTTTCTT 264 Query 7010 GAAAAGG---TTCTTCCGCGCAGATGAACAGTACCCCTTCTTGGTTCATCCAGTGATGCC 7066 ||| || ||||| | | ||| | || | ||| || | | || || |||||| Sbjct 263 GAAGAGAGGATTCTTGC---CTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCC 207 Query 7067 AATGAAGGAGATTCATGAGTCCATTAGATGGACCAAAGACCCACGCAACACGCAGGAACA 7126 ||||| ||||||||| || |||||| | ||||||||||| |||| | || || || || Sbjct 206 AATGAGGGAGATTCACGAATCCATTCGTTGGACCAAAGATGCACGAAGTACTCAAGATCA 147 Query 7127 CGTGAGGTCTCTGTGCCAGCTAGCCTGGCACAATGG---AGAGGAG 7169 |||| | || || ||| |||| |||||||| || ||||||| Sbjct 146 CGTGCGCTCCCTCTGCTTATTAGCATGGCACAACGGGAAAGAGGAG 101 Score = 251 bits (278), Expect = 3e-63 Identities = 461/671 (69%), Gaps = 6/671 (1%) Strand=Plus/Minus Query 4020 GATTCCTGGCTCAAGAAGTTTACTGAAATGACTAATGCCGCCAAAGGTTTAGAGTGGATT 4079 || || ||| | |||||||| | || | | | |||||| || || | |||||||| Sbjct 3244 GACTCTTGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATC 3185 Query 4080 GCACAAAAGATTCAG-AAATTTATTGAGTGGCTGAAGATTAAAATCCTACCTGAAGTGAA 4138 | ||| | | |||| |||||||| || ||||| ||| |||||| |||| | | || Sbjct 3184 TC-CAACAAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAA 3126 Query 4139 GGAAAAACATGAGTTTCTGACTCGCCTAAGACAGCTGCCCTTATTGGAGTCTCAAATTGC 4198 || ||| |||||||| | |||| || || |||||||||||| |||||| | Sbjct 3125 AGAGAAAGTCGAGTTTCTAAACAATCTAAAGCAACTCCCCTTATTGGAGAACCAAATTTC 3066 Query 4199 TACTTTAGAACAGAGTGCCCCATCTCAAAGTGACCAGGAACAGCTTTTTTCTAATGTGCA 4258 || | | |||||| || | || || |||| || | | ||| || ||| Sbjct 3065 TAATCTCGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTC 3006 Query 4259 GTATTTCGCTCATTACTGCAGAAAGTACGCACCTTTGTATGCTGCTGAAGCCAAAAGGGT 4318 || | || || | |||| | || | | ||| | ||||| | ||||| || ||||| Sbjct 3005 TTACCTGGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGT 2946 Query 4319 CTACCAGCTAGAAAAGCGAGTTAACAATTACGTACAGTTCAAGTCCAAATGCCGCATTGA 4378 ||| ||||||||| || | || |||||| | ||||||||| |||| ||| ||||| Sbjct 2945 GTACGCCCTAGAAAAGAGAATGAATAATTACATGCAGTTCAAGAGCAAACACCGTATTGA 2886 Query 4379 ACCTGTATGTTTGTTACTCCATGGCACACCAGGGGCAGGCAAGTCTGTAGCAACTAATCT 4438 ||||||||| | | || ||| | || || | || ||||| | ||||| | Sbjct 2885 ACCTGTATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGAT 2826 Query 4439 AATTGGAAGAGCAATTGCTGAGAAACTAAACAGTTCAGTAT--ATTCATTGCCACCAGAT 4496 |||| ||||| || || || || | || | |||| | |||| || || ||||| Sbjct 2825 TATTGCTAGAGCCATAGCAGACAAGT--ACCACTCCAGTGTGTATTCCTTACCTCCAGAC 2768 Query 4497 CCAGACCACTTTGACGGCTACAAACAACAAGCTGTGGTTATTATGGATGATTTGTGTCAA 4556 ||||||||||||||||| ||||||||||| || | ||||||| || | || ||| Sbjct 2767 CCAGACCACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAA 2708 Query 4557 AATCCAGACGGAAAAGATGTCTCACTATTTTGTCAGATGGTGTCTAGTGTTGATTTTGTG 4616 || |||||||| ||||| | |||||||||||||||||||| || | || |||||| | Sbjct 2707 AACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATA 2648 Query 4617 CCACCTATGGCTGCACTAGAAGAGAAAGGAATCTTATTCACTTCACCTTTTGTGCTGGCT 4676 || |||||||| | || || ||||| ||| ||| |||||| || |||||| | || Sbjct 2647 CCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTCACCTCCAAGTTTGTGATTGCC 2588 Query 4677 TCTACAAATGC 4687 || || || || Sbjct 2587 TCCACTAACGC 2577 >seq1 Length=805 Score = 205 bits (226), Expect = 4e-49 Identities = 456/675 (68%), Gaps = 26/675 (4%) Strand=Plus/Plus Query 6513 GTCGGATGTGATCCAGATCTGTTTTGGAGCAAGATACCAGTGATGCTTGATGGGGAGCTG 6572 || || ||| | || || ||||||||||||| |||| | |||| |||| ||| Sbjct 43 GTGGGTTGTAACCCGGACGTGTTTTGGAGCAAACTACCGATTCTGCTGCCTGGGTCGCTC 102 Query 6573 TTTGCCTTTGATTACACAGGGTATGACGCTAGTTTGAGCCCAGTTTGGTTCCTAGCACTC 6632 ||||||||||| ||| |||| ||||| |||||| | ||||| || |||||| || | Sbjct 103 TTTGCCTTTGACTACTCAGGATATGATGCTAGTCTCAGCCCGGTATGGTTCAGGGCTTTA 162 Query 6633 AAAGTC---TTACTTGAGAAGCTTGGTTATGATTATCAGGAAACCAGGTAT---ATAGAT 6686 |||| |||| |||| |||| ||| | |||| || || ||||| Sbjct 163 GAAGTTGTGTTACGGGAGA---TTGGGTAT---TCAGAGGAGGCCGTGTCCCTAATAGAA 216 Query 6687 TACCTGTGTAATTCTTATCATCTTTACAAAGACAAACATTATTTTGTGAGAGGAGGAATG 6746 | | | | ||| | || ||||| || | ||| || |||||| Sbjct 217 GGGATCAACCACACCCACCATGTGTATCGGAACAAAACATACTGTGTACTTGGTGGAATG 276 Query 6747 CCCTCAGGGTGTTCAGGAACGAGCATCTTCAACTCAATGATTAACAACATCATAATTAGA 6806 |||||||| ||||| || || |||||| || |||||||| ||||||||||| || ||| Sbjct 277 CCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATCATCATCAGA 336 Query 6807 ACCTTGTTGTTGAAGGTATATAAAAATATCGATCTGGACAAATTTAGGATGATTGCGTAT 6866 ||| | ||| | || | ||| || || ||||| | || | ||| | || ||| Sbjct 337 ACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATGGTGGCCTAT 396 Query 6867 GGTGACGACGTGATTGCGTCCTATCCATATCCAATCGATGCAGGCCT--ACTTG-CTAAG 6923 || ||||| ||| | || || || | ||| || ||| |||| | ||| ||||| Sbjct 397 GGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATT---GCCTTGAGTTGGCTAAG 453 Query 6924 GCGGGAAAGGAGTATGGTCTGACAATGACACCAGCTGACAAGAGCGCGGAGTT-CAACAA 6982 | || || ||||||||| |||| ||||| || || ||||| | | | ||| ||| | Sbjct 454 ACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAA-ATCACCCTGTTTCAATGA 512 Query 6983 TGTGACCTGGGAGAATGTGACCTTTTTGAAAAGG---TTCTTCCGCGCAGATGAACAGTA 7039 || || ||||| |||| ||||| |||| || ||||| | |||| | || | Sbjct 513 AGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGC---CAGACCACCAATT 569 Query 7040 CCCCTTCTTGGTTCATCCAGTGATGCCAATGAAGGAGATTCATGAGTCCATTAGATGGAC 7099 || ||||| |||| || |||||| |||| ||||| ||||| |||||| ||||||| Sbjct 570 TCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGATGGAC 629 Query 7100 CAAAGACCCACGCAACACGCAGGAACACGTGAGGTCTCTGTGCCAGCTAGCCTGGCACAA 7159 |||||| | |||||||| || || |||||| | || ||||| | | | || |||||||| Sbjct 630 TAAAGACGCGCGCAACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGGCACAA 689 Query 7160 TGGAGAGGAGGTATA 7174 ||| |||| | ||| Sbjct 690 TGGTAAGGATGAATA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23486825981680