Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_026314.1 Length=7853 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 7e-15 seq4083 89.7 3e-14 >seq1 Length=805 Score = 91.5 bits (100), Expect = 7e-15 Identities = 191/286 (67%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 7223 GGAGGGATGCCATCAGGCTGCTCTGGAACATCAATTTTCAATTCAATGATCNNNNNNNNN 7282 || || ||||| ||||| || ||||| || || || || |||||||||||| Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 7283 NNNNNNCGAACCCTGTTGCTGGATGCATACAAGGGAATAGACCTGGAGCAACTGAAAATG 7342 ||||||| ||| | | | | ||||||||||||||||| | |||| ||| Sbjct 328 ATCATCAGAACCCTTTTGATCAAAACTTTTAAGGGAATAGACCTGGATGAGTTGAACATG 387 Query 7343 ATTGCTTATGGAGATGATGTTGTAGCCACATACCCATTTCCGATTGA-CGCAGCGTCA-C 7400 | || ||||| || ||||| | || | ||||| ||||| ||||| || | | | Sbjct 388 GTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGC--CTTGAGT 445 Query 7401 TGGCTGATTGCGGCAAACGGTATGGGCTGAAAATGAcccccccTGACAAGGGGAGTGAAT 7460 ||||| | |||||| |||||| ||| ||||| || | ||||| | Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTT 505 Query 7461 TCAATAATGTAACTTGGGAAAATGTAACATTCCTAAAAAGAAGATT 7506 ||||| | ||||| |||||||||| || ||||| || ||| |||| Sbjct 506 TCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATT 551 >seq4083 Length=3246 Score = 89.7 bits (98), Expect = 3e-14 Identities = 221/330 (67%), Gaps = 4/330 (1%) Strand=Plus/Minus Query 6693 ACCTCGAAGGCCTTGATCTCAACACAAGTGCTGGATACCCATACACATTGAAT-GGAATC 6751 |||| |||| | ||||| |||||||||| ||||| ||||||| | | | || ||| Sbjct 1071 ACCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAG-TGCACTAGGCATC 1013 Query 6752 AAGAAGAGAGATATCCTTGACCCAGAAACAAAAGATACAAAGAAACTTCAAGAATGCTTG 6811 ||||| | || || | || ||| ||| ||| | || | || | | || Sbjct 1012 AAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATG 953 Query 6812 GACAAGTATGGAGTGGATTTGCCTTTCATTTCATACCTAAAAGATGAACTTAGACCATTG 6871 ||||||||||| ||||| | || | | | | || | |||||||||||||| | | Sbjct 952 GACAAGTATGGGTTGGATCTACCGTACTCTACTTATGTTAAAGATGAACTTAGGGCCATC 893 Query 6872 GAAAAGATCAAGAAAGGAAAGACAAGAATCATTG-AGTGTTCAAGCATGAATGACACAAT 6930 || |||||||||||||| ||| | | |||| | || | | ||| | |||||| || | Sbjct 892 GACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGC-AGCCTAAATGACTCAGT 834 Query 6931 CAGAATGAAAATGATGTTTGGAAAGCTTTTCCAGACAATGCATCGCAACCCAGGAACAAT 6990 ||| ||||| ||||| | |||| | | | || ||| ||||| ||||| Sbjct 833 GTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAAT 774 Query 6991 TACAGGCTCAGCTGTGGGTTGCAATCCAGA 7020 || || |||||||| || ||||| ||||| Sbjct 773 CACCGGTTCAGCTGTTGGGTGCAACCCAGA 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25013149686484