Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_029854.1 Length=7382 Score E Sequences producing significant alignments: (Bits) Value seq4083 224 5e-55 seq4094 84.2 1e-12 seq4303 78.8 4e-11 >seq4083 Length=3246 Score = 224 bits (248), Expect = 5e-55 Identities = 631/961 (66%), Gaps = 16/961 (2%) Strand=Plus/Minus Query 5717 TGTTTATGCCCGTAGGTGCTGTGAAAGACTACGGCTACTTGAACCTAGCAGGCAGACCGA 5776 ||||| |||| || || | |||| | || || | |||||||| || | || | Sbjct 1602 TGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCCA 1543 Query 5777 CCCACCGTACGCTCATGTACAATTTCCCAACACGCGCAGGGCAATGTGGCGGTGTTGTAG 5836 | ||| | || | |||||||||||||||||| ||||| || ||||| |||||||| Sbjct 1542 CTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGA 1483 Query 5837 TTTCAATGGGCAAAATCATTGGGATTCACATCGGTGGAAACGGTGCACAGGGTTTCGCTG 5896 | |||| ||| | |||||||| ||||| ||||| |||||| || |||||| | Sbjct 1482 CAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGCG 1423 Query 5897 CTGCACTGCTGCGCAGGTACTTCACACAGCCA-CAAGGTGAGATTGAGTTCATGGAAAAG 5955 |||| ||| | | | ||||| ||| | ||||||||||| | | ||| | Sbjct 1422 CTGCCCTGAAGAGGGGATACTTTTG-CAGTGAACAAGGTGAGATCCAATGGATGAAGCCC 1364 Query 5956 AGCAAAGATGCGGGCTACCCCATCATTAATGCCCCCACCGAGACCAAGTTGCATCCCAGT 6015 | |||||| | ||| | ||| || | || || || ||| | | || ||| Sbjct 1363 AACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCACAAAGCTTGAACCAAGT 1304 Query 6016 GTTTTCTTTGATGTTTTCTCTGGAGAAAAGGAACCCGCAGTACTACATAAGAAAGACCCC 6075 || || ||||| ||| || || || || ||||| || || |||||||| Sbjct 1303 GTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCA 1244 Query 6076 AGACTCGAGGTGAACTTCGAAGATGCACTTTTCTCCAAGTACATAGGAAATG---TTCAC 6132 || || || || |||| ||| | || ||||| || || ||| | || || |||| Sbjct 1243 AGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTTCAT 1184 Query 6133 AAACCTGTCACTGAG---GAGATGGAGATAGCAATTGATCATTATGCCAATCAGTTGAAG 6189 |||| | | ||| | | |||| || | ||||||||||| || | ||| Sbjct 1183 GAACCCGAC---GAGTTTGTCAAGGAGGCGGCCTTA---CATTATGCCAACCAACTCAAG 1130 Query 6190 CAGCTTAATATTGACCCCACTCCCATTAGCATGGAGGATGCCATTTATGGTACTGAGGGC 6249 ||| | |||| | |||| || |||||||||||||| ||| || || ||| | Sbjct 1129 CAGTTAGATATCAAGACCACCAAGATGAGCATGGAGGATGCATGTTACGGCACAGAGAAC 1070 Query 6250 CTGGAGGCGCTAGACCTTGGCACCAGCGCAGGTTACCCCTACGTGGCCCTAGGCATCAAG 6309 ||||| || |||| ||| ||| || ||||| || || ||| || |||||||||||| Sbjct 1069 CTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAG 1010 Query 6310 AAAAGAGACATTTTAAATAAAGAGACTAGAGACGTGACCAAAATGAAGCAGTGTATCGAC 6369 |||| |||||||| || | ||| | || || | ||| ||||| | || ||| Sbjct 1009 AAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATGGAC 950 Query 6370 AAGTACGGTCTTAATCTGCCGATGGTC-ACCTATGTCAAAGATGAACTCAGATCCAAGGA 6428 ||||| || | |||| ||| | || || ||||| ||||||||||| || ||| || Sbjct 949 AAGTATGGGTTGGATCTACCG-TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGA 891 Query 6429 GAAGGTGAAGAAGGGCAAGAGCAGACTCATTGAGGCGTCGAGTCTAAATGATTCTGTTGC 6488 ||| | ||||| || ||| | ||||| || ||| || |||||||| || || Sbjct 890 CAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTA 831 Query 6489 AATGCGCTGCGCCTTTGGCAACCTCTATAAGGCTTTCCACACCAACCCCGGCACCCTGAC 6548 || | | ||||| |||| ||| | ||||||||| |||| || || || | || Sbjct 830 CTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCAC 771 Query 6549 CGGATGCGCTGTGGGCTGCAATCCTGAGACTTTTTGGAGCAAGATACCAGTAATGATGGA 6608 ||| | ||||| || ||||| || || || ||||||||| ||||| | | | Sbjct 770 CGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCC 711 Query 6609 TGGTGAGTTGTTTGGCTTTGACTACACTGCGTACGATGCCAGCCTCTCACCAGTCTGGTT 6668 || | | || | ||||||||| | | ||| || || || ||| ||||| ||||| Sbjct 710 AGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTT 651 Query 6669 C 6669 | Sbjct 650 C 650 Score = 109 bits (120), Expect = 3e-20 Identities = 241/354 (68%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 4393 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTAATT--CAT-GGCACT 4449 ||||||||||||| ||| | || ||||||||||| ||| |||||| || ||| | Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGC---CTAATTATCAGAGGCTCG 2858 Query 4450 CCTGGTACTGGCAAATCACTTGCAACTACAATCATCGGTCGTAAGATCGCCGAATATGAG 4509 ||||||||||| || ||| | ||||| || || | | | || || || | | Sbjct 2857 CCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTAC 2798 Query 4510 AACAGTGGTGTCTACAGCCTCCCACCCGACCCAGATCATTTCGACGGGTATGCTGAGCAA 4569 || |||| || | | || || |||||||| || || ||||| || | || Sbjct 2797 CACTCCAGTGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAG 2738 Query 4570 GCCGTCGTAATCATGGATGA--TTTGCATCAAAACCCAGATGGGAAGGATATGAGTCTAT 4627 |||| | ||||| || | ||| ||||||||||| ||||| || ||| |||| Sbjct 2737 ATCGTCACTGTTATGGACGACCTATGC--CAAAACCCAGACGGGAAAGACATGTCACTAT 2680 Query 4628 TTTGCCAGATGGTCTCCACAACACCATTCGTGGTGCCGATGGCTGCCTTGGAGGACAAGG 4687 |||| ||||||||||||||| || | ||| ||||| | ||||||| |||| Sbjct 2679 TTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGG 2620 Query 4688 GTAGGCT-TTTCACTTCCAAATATGTGCTTGCGTCCACGAATGCCAACCACATC 4740 | || || ||||| ||||| | |||| |||| ||||| || |||| ||||| Sbjct 2619 G-AGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCACTAACGCCAGTAACATC 2567 >seq4094 Length=3074 Score = 84.2 bits (92), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 2074 TACTACGCTCAGTGGTCCGGCTCCGTCGAGTTCACATTTATGTTTTGTGGCACCTTTATG 2133 |||||| | || ||||| || || | || |||| || ||||| || |||||||| Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749 Query 2134 ACCACTGGTAAGGTAATTATTGCCTACACACCACCCGGAGGCGACGCGCCTACAGA-CAG 2192 | || || ||| | | || || ||||||||||| |||||| | || | || | | Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCGG 1809 Query 2193 AAGACAAGCAATGTTGGGAACGCACGTCGTTTGGGATTTCGGGCTTCAATCCAGCATCAC 2252 ||| || |||||||| ||||||||| | ||||| || ||||| ||||| |||| Sbjct 1810 GCGAC-CGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCAC 1868 Query 2253 CCTGGTAGTCCCGTGGAT 2270 ||| ||| | || ||||| Sbjct 1869 CCTTGTAATACCATGGAT 1886 Score = 78.8 bits (86), Expect = 4e-11 Identities = 143/205 (70%), Gaps = 22/205 (11%) Strand=Plus/Plus Query 492 GCCAAGAGCCGATTGTGCTGG--AGTGGTCTTCCTCCGGGGCCGTGAATGCTGCTAATCC 549 || ||||| | |||| ||| | ||||||| ||| || || ||||||| |||||||| Sbjct 39 GCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCC----GGCCCCTGAATGCGGCTAATCC 94 Query 550 TAACCTCCGAGCGTGTGCGCACAATCCAG-TGTTGCTACGTCGTAACGCGTAAGTTGGAG 608 |||| | |||| ||| |||||||| | | | ||||||| | | || | | Sbjct 95 TAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCA 154 Query 609 GCGGAACAGACTACTTTCGGCACCCCGTGTTTCCTTTATTTTATTCTTAT--------TT 660 ||||||| ||||||||| || |||||||||| |||||||||||| | Sbjct 155 GCGGAACCGACTACTTT-GGGTGTCCGTGTTTCC----TTTTATTCTTATATTGGCTGCT 209 Query 661 TATGGTGACAATTGCAGAGATTTGT 685 |||||||||||| || ||| |||| Sbjct 210 TATGGTGACAAT--CAAAGAGTTGT 232 >seq4303 Length=1160 Score = 78.8 bits (86), Expect = 4e-11 Identities = 138/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 4393 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTAATTCATGGCACTCCT 4452 ||||||||||||| ||| | || ||||||||||| || | | ||| ||| | || Sbjct 958 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCA 1017 Query 4453 GGTACTGGCAAATCACTTGCAACTACAATCATCGGTCGTAAGATCGCCGAATATGAGAAC 4512 || ||||| || || ||||| || ||||| | ||| || || || | | || Sbjct 1018 GGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCAC 1077 Query 4513 AGTGGTGTCTACAGCCTCCCACCCGACCCAGATCATTTCGACGGGTATGCTGAGCAAGCC 4572 | |||| ||| || ||||| ||||| || ||||| ||||||||| |||||| Sbjct 1078 TCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTG 1137 Query 4573 GTCGTAATCATGGATGATTTG 4593 ||| | | ||||||||| || Sbjct 1138 GTCACAGTTATGGATGATCTG 1158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23506025021992