Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_029854.1
Length=7382
Score E
Sequences producing significant alignments: (Bits) Value
seq4083 224 5e-55
seq4094 84.2 1e-12
seq4303 78.8 4e-11
>seq4083
Length=3246
Score = 224 bits (248), Expect = 5e-55
Identities = 631/961 (66%), Gaps = 16/961 (2%)
Strand=Plus/Minus
Query 5717 TGTTTATGCCCGTAGGTGCTGTGAAAGACTACGGCTACTTGAACCTAGCAGGCAGACCGA 5776
||||| |||| || || | |||| | || || | |||||||| || | || |
Sbjct 1602 TGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCCA 1543
Query 5777 CCCACCGTACGCTCATGTACAATTTCCCAACACGCGCAGGGCAATGTGGCGGTGTTGTAG 5836
| ||| | || | |||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 1542 CTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGA 1483
Query 5837 TTTCAATGGGCAAAATCATTGGGATTCACATCGGTGGAAACGGTGCACAGGGTTTCGCTG 5896
| |||| ||| | |||||||| ||||| ||||| |||||| || |||||| |
Sbjct 1482 CAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGCG 1423
Query 5897 CTGCACTGCTGCGCAGGTACTTCACACAGCCA-CAAGGTGAGATTGAGTTCATGGAAAAG 5955
|||| ||| | | | ||||| ||| | ||||||||||| | | ||| |
Sbjct 1422 CTGCCCTGAAGAGGGGATACTTTTG-CAGTGAACAAGGTGAGATCCAATGGATGAAGCCC 1364
Query 5956 AGCAAAGATGCGGGCTACCCCATCATTAATGCCCCCACCGAGACCAAGTTGCATCCCAGT 6015
| |||||| | ||| | ||| || | || || || ||| | | || |||
Sbjct 1363 AACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCACAAAGCTTGAACCAAGT 1304
Query 6016 GTTTTCTTTGATGTTTTCTCTGGAGAAAAGGAACCCGCAGTACTACATAAGAAAGACCCC 6075
|| || ||||| ||| || || || || ||||| || || ||||||||
Sbjct 1303 GTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTGACTAGTAAAGACCCA 1244
Query 6076 AGACTCGAGGTGAACTTCGAAGATGCACTTTTCTCCAAGTACATAGGAAATG---TTCAC 6132
|| || || || |||| ||| | || ||||| || || ||| | || || ||||
Sbjct 1243 AGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTTCAT 1184
Query 6133 AAACCTGTCACTGAG---GAGATGGAGATAGCAATTGATCATTATGCCAATCAGTTGAAG 6189
|||| | | ||| | | |||| || | ||||||||||| || | |||
Sbjct 1183 GAACCCGAC---GAGTTTGTCAAGGAGGCGGCCTTA---CATTATGCCAACCAACTCAAG 1130
Query 6190 CAGCTTAATATTGACCCCACTCCCATTAGCATGGAGGATGCCATTTATGGTACTGAGGGC 6249
||| | |||| | |||| || |||||||||||||| ||| || || ||| |
Sbjct 1129 CAGTTAGATATCAAGACCACCAAGATGAGCATGGAGGATGCATGTTACGGCACAGAGAAC 1070
Query 6250 CTGGAGGCGCTAGACCTTGGCACCAGCGCAGGTTACCCCTACGTGGCCCTAGGCATCAAG 6309
||||| || |||| ||| ||| || ||||| || || ||| || ||||||||||||
Sbjct 1069 CTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAAG 1010
Query 6310 AAAAGAGACATTTTAAATAAAGAGACTAGAGACGTGACCAAAATGAAGCAGTGTATCGAC 6369
|||| |||||||| || | ||| | || || | ||| ||||| | || |||
Sbjct 1009 AAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCAAGATGAAATTCTACATGGAC 950
Query 6370 AAGTACGGTCTTAATCTGCCGATGGTC-ACCTATGTCAAAGATGAACTCAGATCCAAGGA 6428
||||| || | |||| ||| | || || ||||| ||||||||||| || ||| ||
Sbjct 949 AAGTATGGGTTGGATCTACCG-TACTCTACTTATGTTAAAGATGAACTTAGGGCCATCGA 891
Query 6429 GAAGGTGAAGAAGGGCAAGAGCAGACTCATTGAGGCGTCGAGTCTAAATGATTCTGTTGC 6488
||| | ||||| || ||| | ||||| || ||| || |||||||| || ||
Sbjct 890 CAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTCAGTGTA 831
Query 6489 AATGCGCTGCGCCTTTGGCAACCTCTATAAGGCTTTCCACACCAACCCCGGCACCCTGAC 6548
|| | | ||||| |||| ||| | ||||||||| |||| || || || | ||
Sbjct 830 CTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTACAATCAC 771
Query 6549 CGGATGCGCTGTGGGCTGCAATCCTGAGACTTTTTGGAGCAAGATACCAGTAATGATGGA 6608
||| | ||||| || ||||| || || || ||||||||| ||||| | | |
Sbjct 770 CGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCTACTCCC 711
Query 6609 TGGTGAGTTGTTTGGCTTTGACTACACTGCGTACGATGCCAGCCTCTCACCAGTCTGGTT 6668
|| | | || | ||||||||| | | ||| || || || ||| ||||| |||||
Sbjct 710 AGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGTGTGGTT 651
Query 6669 C 6669
|
Sbjct 650 C 650
Score = 109 bits (120), Expect = 3e-20
Identities = 241/354 (68%), Gaps = 12/354 (3%)
Strand=Plus/Minus
Query 4393 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTAATT--CAT-GGCACT 4449
||||||||||||| ||| | || ||||||||||| ||| |||||| || ||| |
Sbjct 2914 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGC---CTAATTATCAGAGGCTCG 2858
Query 4450 CCTGGTACTGGCAAATCACTTGCAACTACAATCATCGGTCGTAAGATCGCCGAATATGAG 4509
||||||||||| || ||| | ||||| || || | | | || || || | |
Sbjct 2857 CCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGACAAGTAC 2798
Query 4510 AACAGTGGTGTCTACAGCCTCCCACCCGACCCAGATCATTTCGACGGGTATGCTGAGCAA 4569
|| |||| || | | || || |||||||| || || ||||| || | ||
Sbjct 2797 CACTCCAGTGTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAACAACAG 2738
Query 4570 GCCGTCGTAATCATGGATGA--TTTGCATCAAAACCCAGATGGGAAGGATATGAGTCTAT 4627
|||| | ||||| || | ||| ||||||||||| ||||| || ||| ||||
Sbjct 2737 ATCGTCACTGTTATGGACGACCTATGC--CAAAACCCAGACGGGAAAGACATGTCACTAT 2680
Query 4628 TTTGCCAGATGGTCTCCACAACACCATTCGTGGTGCCGATGGCTGCCTTGGAGGACAAGG 4687
|||| ||||||||||||||| || | ||| ||||| | ||||||| ||||
Sbjct 2679 TTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGG 2620
Query 4688 GTAGGCT-TTTCACTTCCAAATATGTGCTTGCGTCCACGAATGCCAACCACATC 4740
| || || ||||| ||||| | |||| |||| ||||| || |||| |||||
Sbjct 2619 G-AGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCACTAACGCCAGTAACATC 2567
>seq4094
Length=3074
Score = 84.2 bits (92), Expect = 1e-12
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 2074 TACTACGCTCAGTGGTCCGGCTCCGTCGAGTTCACATTTATGTTTTGTGGCACCTTTATG 2133
|||||| | || ||||| || || | || |||| || ||||| || ||||||||
Sbjct 1690 TACTACACCCAATGGTCAGGATCACTGGAAGTCACCTTCATGTTCACCGGGTCCTTTATG 1749
Query 2134 ACCACTGGTAAGGTAATTATTGCCTACACACCACCCGGAGGCGACGCGCCTACAGA-CAG 2192
| || || ||| | | || || ||||||||||| |||||| | || | || | |
Sbjct 1750 GCTACCGGCAAGATGCTCATAGCATACACACCACCAGGAGGCCCCTTACCCAAGGACCGG 1809
Query 2193 AAGACAAGCAATGTTGGGAACGCACGTCGTTTGGGATTTCGGGCTTCAATCCAGCATCAC 2252
||| || |||||||| ||||||||| | ||||| || ||||| ||||| ||||
Sbjct 1810 GCGAC-CGCCATGTTGGGCACGCACGTCATCTGGGACTTTGGGCTGCAATCGTCTGTCAC 1868
Query 2253 CCTGGTAGTCCCGTGGAT 2270
||| ||| | || |||||
Sbjct 1869 CCTTGTAATACCATGGAT 1886
Score = 78.8 bits (86), Expect = 4e-11
Identities = 143/205 (70%), Gaps = 22/205 (11%)
Strand=Plus/Plus
Query 492 GCCAAGAGCCGATTGTGCTGG--AGTGGTCTTCCTCCGGGGCCGTGAATGCTGCTAATCC 549
|| ||||| | |||| ||| | ||||||| ||| || || ||||||| ||||||||
Sbjct 39 GCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCC----GGCCCCTGAATGCGGCTAATCC 94
Query 550 TAACCTCCGAGCGTGTGCGCACAATCCAG-TGTTGCTACGTCGTAACGCGTAAGTTGGAG 608
|||| | |||| ||| |||||||| | | | ||||||| | | || | |
Sbjct 95 TAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACTCTGCA 154
Query 609 GCGGAACAGACTACTTTCGGCACCCCGTGTTTCCTTTATTTTATTCTTAT--------TT 660
||||||| ||||||||| || |||||||||| |||||||||||| |
Sbjct 155 GCGGAACCGACTACTTT-GGGTGTCCGTGTTTCC----TTTTATTCTTATATTGGCTGCT 209
Query 661 TATGGTGACAATTGCAGAGATTTGT 685
|||||||||||| || ||| ||||
Sbjct 210 TATGGTGACAAT--CAAAGAGTTGT 232
>seq4303
Length=1160
Score = 78.8 bits (86), Expect = 4e-11
Identities = 138/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 4393 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTAATTCATGGCACTCCT 4452
||||||||||||| ||| | || ||||||||||| || | | ||| ||| | ||
Sbjct 958 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCA 1017
Query 4453 GGTACTGGCAAATCACTTGCAACTACAATCATCGGTCGTAAGATCGCCGAATATGAGAAC 4512
|| ||||| || || ||||| || ||||| | ||| || || || | | ||
Sbjct 1018 GGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCAC 1077
Query 4513 AGTGGTGTCTACAGCCTCCCACCCGACCCAGATCATTTCGACGGGTATGCTGAGCAAGCC 4572
| |||| ||| || ||||| ||||| || ||||| ||||||||| ||||||
Sbjct 1078 TCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCAAGTG 1137
Query 4573 GTCGTAATCATGGATGATTTG 4593
||| | | ||||||||| ||
Sbjct 1138 GTCACAGTTATGGATGATCTG 1158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23506025021992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |