Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_029905.1
Length=7367
Score E
Sequences producing significant alignments: (Bits) Value
seq4094 145 4e-31
seq4083 143 1e-30
seq1 116 2e-22
>seq4094
Length=3074
Score = 145 bits (160), Expect = 4e-31
Identities = 179/241 (74%), Gaps = 19/241 (8%)
Strand=Plus/Plus
Query 427 GGACAGGGTGTGAAGGCGCTATTGCGCTACTAAGGAGTCCTCCGGCCCCTGAATGCGGCT 486
||||| |||| |||| |||||| |||| | || ||||||||||||||||||||||||
Sbjct 30 GGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGCCCCTGAATGCGGCT 89
Query 487 AACCCGAACCCCG-AGCCCACGGTGGTAAACCCGCCACAAGTGGGTCGTAATGAGTAATT 545
|| || ||| || ||| || | || || | |||| ||||||||| | || |
Sbjct 90 AATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACT 149
Query 546 -TGGGGCAGGGACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCCATACGATGGCTG 604
|| || || ||||||||||||||||||||||||||||| || ||| || ||||||
Sbjct 150 CTGCAGC-GGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCT-TATATTGGCTG 207
Query 605 CTTATGGTGACAA--------------CCATA-AGCAATTGGATTGGCCATCCGGTGTTC 649
||||||||||||| ||||| ||| ||||||||||||||||||||| |
Sbjct 208 CTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGC 267
Query 650 A 650
|
Sbjct 268 A 268
>seq4083
Length=3246
Score = 143 bits (158), Expect = 1e-30
Identities = 605/927 (65%), Gaps = 50/927 (5%)
Strand=Plus/Minus
Query 6271 GGAATCAAGAAGAGGGACATACTTGATCCAAAAACA----AAGTCAACAGAAAAGATGAA 6326
|| |||||||| | |||||| | ||||||| ||| | |||| || |||||||
Sbjct 1018 GGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCA----AGATGAA 963
Query 6327 ACAGTGTATGGACAAGTATGGCATTGAGCTTCCCTTTGTAACATACTTA----AAGGATG 6382
| | |||||||||||||| | || || || ||| |||||| || ||||
Sbjct 962 ATTCTACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATG 907
Query 6383 AACTTAGACCTAAAGAAAAAGTTGAGCAAGGGAAAACTAGGTTAATAGAAGCCTCCAGTC 6442
||||||| | | || || | || ||||||| || | | |||||||| ||| |
Sbjct 906 AACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCC 847
Query 6443 TCAATGATTCAGT-TGCTATGAGAATGTGTTTTGGTAATTTGTACTCCAAGTTT-CATGA 6500
| ||||| ||||| | || |||||||| ||||| | | || | | ||| || |
Sbjct 846 TAAATGACTCAGTGTACT-TGAGAATGACATTTGGGCACCTTTA-TGAAGCTTTCCACGC 789
Query 6501 GAATCCAGGAACAATAACAGGCTCAGCAGTTGGTTGTAATCCAGACACATTTTGGTCCAA 6560
|||||||| ||||| || || ||||| ||||| || || ||||| || ||| |||
Sbjct 788 CAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAA 729
Query 6561 GATCCCTTGTATGATGGATGGAGAATTGTTTGCTTATGACTATTCCAACTTTGATGCCAG 6620
| | || | | | ||| | || || | |||||| || | ||| || ||
Sbjct 728 GTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAG 669
Query 6621 TCTAAGCCCAGTTTGGTTTATGTGTTTAAAGTACGTGCTTAGACGCCTAGGAT--TTAAA 6678
||| |||||||| ||||| | | | || || || | | |||| | |
Sbjct 668 TCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGA 609
Query 6679 AGTAAACAATTAGGAT-TCATTGATTACATGTGTCACAGTACTCACGTGTATAGAGGAGT 6737
|| | || | | | |||| || || ||||| ||| ||| || | | |
Sbjct 608 AG-ACGCAGT--GTCTCTCATAGAAGGGATCAATCACACCCATCA--TGTGTACCGCAAT 554
Query 6738 CCAA--TATAGGGTGTCAGGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAAT 6795
|| ||| | || || |||||||| |||||||| ||||| || ||||| ||
Sbjct 553 AAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAAC 494
Query 6796 TCTATGATTAATAATATAATTATTAGGACTTTAGT-ATTAGACACTTACAAAGGCATAGA 6854
|| ||||| || ||||| |||||||| || | | |||| | || | |||||| |||||
Sbjct 493 TCGATGATCAACAATATCATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGA 435
Query 6855 TTTGGCTCAACTTAAAATTATTGCTTATGGTGATGATGTTATTTGC-AGTTATCCATT-T 6912
| | | | |||| || || | || || || ||||||| | || || ||||| || ||
Sbjct 434 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATG-TGTTGGCTAGTTACCCCTTCC 376
Query 6913 CAACTGGATG-CAGAACAGTTGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCC 6971
||| || || | | ||||||||| |||||||||| ||||| || || ||||| ||
Sbjct 375 CAATTGACTGTCTG--GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCC 318
Query 6972 ACCAGACAAGGGTGACTCT--TTTAATGA---TACAAACTGGGTTAATGTGACATTTCTC 7026
| ||||| || || || |||||||| |||| |||| |||| || || |
Sbjct 317 TGCCGACAA--GTCACCCTGCTTTAATGAGGTTACA---TGGGAGAATGCCACTTTCTTG 263
Query 7027 AAGAGGTACTTCAGAGCTGATGAAGAGTATCCTTTTTTGGTGCACCCAGTTATGCCAATG 7086
||||| ||| ||||| | | | || ||| | | ||||| |||||||||
Sbjct 262 AAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATG 203
Query 7087 AAGGAGATCCAGGAGTCCATTCGATGGACCCGTGAGGGCGCGGA-TATTAAAGACCACGT 7145
| |||||| || || |||||||| |||||| || || || | || | |||| |||||
Sbjct 202 AGGGAGATTCACGAATCCATTCGTTGGACCAAAGA-TGCACGAAGTACTCAAGATCACGT 144
Query 7146 CCGCAGCCTTTGCTACTTGGCCTGGCA 7172
||| ||| |||| || || |||||
Sbjct 143 GCGCTCCCTCTGCTTATTAGCATGGCA 117
Score = 118 bits (130), Expect = 5e-23
Identities = 178/248 (72%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434
||||| ||||||| ||| ||||| || ||||| | || | ||||||| ||| | |
Sbjct 2863 GGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGAC 2804
Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493
||||| | | || | ||||| | |||||||||||| | ||||||||||| || |
Sbjct 2803 AAGTACCACTCCAGT-GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAA 2745
Query 4494 TCAACAAGAT-GTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGA 4552
|||| |||| || | | ||||| || | | ||||| || || || | || |||
Sbjct 2744 ACAAC-AGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGT 2686
Query 4553 AATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAG 4612
| |||| ||||| ||||| ||||| ||||| |||| ||| || |||||||| |||| |
Sbjct 2685 CACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGG 2626
Query 4613 ATAAGGGA 4620
| ||||||
Sbjct 2625 AGAAGGGA 2618
>seq1
Length=805
Score = 116 bits (128), Expect = 2e-22
Identities = 296/444 (67%), Gaps = 6/444 (1%)
Strand=Plus/Plus
Query 6754 GGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAATTCTATGATTAATAATATA 6813
||||||||||| ||||| ||||| || || || |||||||| ||||| || || ||
Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327
Query 6814 ATTATTAGGA--CTTTAGTATTAGACACTTACAAAGGCATAGATTTGGCTCAACTTAAAA 6871
|| || || | |||| | || | | |||| || || ||||| ||| | | | || |
Sbjct 328 ATCATCAGAACCCTTTTG-ATCA-AAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 385
Query 6872 TTATTGCTTATGGTGATGATGTTATTTGCAGTTATCCATTTCAACTGGATGCAGAACAGT 6931
| | || ||||| || ||||| | ||||| || |||| | ||| |||
Sbjct 386 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 445
Query 6932 TGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCCACCAGACAAGGGTGACTCTT 6991
|||| ||| | ||||| || ||||| |||| |||||||| ||||||| || ||
Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTT 505
Query 6992 TTAATGATACAAACTGGGTTAATGTGACATTTCTCAAGAGGTACTTCAGAGCTGATGAAG 7051
| ||||| || |||| |||| || || || ||||| ||| | || |
Sbjct 506 TCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACC 565
Query 7052 AGTATCCTTTTTTGGTGCACCCAGTTATGCCAATGAAGGAGATCCAGGAGTCCATTCGAT 7111
| | ||| || || | ||||| ||||| |||| |||||||| || ||||||||||
Sbjct 566 AATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGAT 625
Query 7112 GGACCCGTGA-GGGCGCGGATATTAAAGACCACGTCCGCAGCCTTTGCTACTTGGCCTGG 7170
|||| || | |||| | | |||| ||||| ||| ||| || ||||| |||
Sbjct 626 GGACTAAAGACGCGCGC-AACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGG 684
Query 7171 CATTCAGGTCAGGAAGAATATGAG 7194
|| ||| |||| |||||||||
Sbjct 685 CACAATGGTAAGGATGAATATGAG 708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23458027421212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |