Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_029905.1 Length=7367 Score E Sequences producing significant alignments: (Bits) Value seq4094 145 4e-31 seq4083 143 1e-30 seq1 116 2e-22 >seq4094 Length=3074 Score = 145 bits (160), Expect = 4e-31 Identities = 179/241 (74%), Gaps = 19/241 (8%) Strand=Plus/Plus Query 427 GGACAGGGTGTGAAGGCGCTATTGCGCTACTAAGGAGTCCTCCGGCCCCTGAATGCGGCT 486 ||||| |||| |||| |||||| |||| | || |||||||||||||||||||||||| Sbjct 30 GGACATGGTGCGAAGAGTCTATTGAGCTAGTTAGTGGTCCTCCGGCCCCTGAATGCGGCT 89 Query 487 AACCCGAACCCCG-AGCCCACGGTGGTAAACCCGCCACAAGTGGGTCGTAATGAGTAATT 545 || || ||| || ||| || | || || | |||| ||||||||| | || | Sbjct 90 AATCCTAACTGCGGAGCACATGCCTTCAATCCAGAGGGTAGTGTGTCGTAATGGGCAACT 149 Query 546 -TGGGGCAGGGACCGACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCCATACGATGGCTG 604 || || || ||||||||||||||||||||||||||||| || ||| || |||||| Sbjct 150 CTGCAGC-GGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCT-TATATTGGCTG 207 Query 605 CTTATGGTGACAA--------------CCATA-AGCAATTGGATTGGCCATCCGGTGTTC 649 ||||||||||||| ||||| ||| ||||||||||||||||||||| | Sbjct 208 CTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGGATTGGCCATCCGGTGTGC 267 Query 650 A 650 | Sbjct 268 A 268 >seq4083 Length=3246 Score = 143 bits (158), Expect = 1e-30 Identities = 605/927 (65%), Gaps = 50/927 (5%) Strand=Plus/Minus Query 6271 GGAATCAAGAAGAGGGACATACTTGATCCAAAAACA----AAGTCAACAGAAAAGATGAA 6326 || |||||||| | |||||| | ||||||| ||| | |||| || ||||||| Sbjct 1018 GGCATCAAGAAAAAGGACATTTTGGATCCAACAACTCGCGATGTCAGCA----AGATGAA 963 Query 6327 ACAGTGTATGGACAAGTATGGCATTGAGCTTCCCTTTGTAACATACTTA----AAGGATG 6382 | | |||||||||||||| | || || || ||| |||||| || |||| Sbjct 962 ATTCTACATGGACAAGTATGGGTTGGATCTACC----GTACTCTACTTATGTTAAAGATG 907 Query 6383 AACTTAGACCTAAAGAAAAAGTTGAGCAAGGGAAAACTAGGTTAATAGAAGCCTCCAGTC 6442 ||||||| | | || || | || ||||||| || | | |||||||| ||| | Sbjct 906 AACTTAGGGCCATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCC 847 Query 6443 TCAATGATTCAGT-TGCTATGAGAATGTGTTTTGGTAATTTGTACTCCAAGTTT-CATGA 6500 | ||||| ||||| | || |||||||| ||||| | | || | | ||| || | Sbjct 846 TAAATGACTCAGTGTACT-TGAGAATGACATTTGGGCACCTTTA-TGAAGCTTTCCACGC 789 Query 6501 GAATCCAGGAACAATAACAGGCTCAGCAGTTGGTTGTAATCCAGACACATTTTGGTCCAA 6560 |||||||| ||||| || || ||||| ||||| || || ||||| || ||| ||| Sbjct 788 CAATCCAGGTACAATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAA 729 Query 6561 GATCCCTTGTATGATGGATGGAGAATTGTTTGCTTATGACTATTCCAACTTTGATGCCAG 6620 | | || | | | ||| | || || | |||||| || | ||| || || Sbjct 728 GTTACCAATTCTACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAG 669 Query 6621 TCTAAGCCCAGTTTGGTTTATGTGTTTAAAGTACGTGCTTAGACGCCTAGGAT--TTAAA 6678 ||| |||||||| ||||| | | | || || || | | |||| | | Sbjct 668 TCTCAGCCCAGTGTGGTTCAGGGCGCTGGAGATAGTCCTGCGGGAAATTGGATACTCCGA 609 Query 6679 AGTAAACAATTAGGAT-TCATTGATTACATGTGTCACAGTACTCACGTGTATAGAGGAGT 6737 || | || | | | |||| || || ||||| ||| ||| || | | | Sbjct 608 AG-ACGCAGT--GTCTCTCATAGAAGGGATCAATCACACCCATCA--TGTGTACCGCAAT 554 Query 6738 CCAA--TATAGGGTGTCAGGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAAT 6795 || ||| | || || |||||||| |||||||| ||||| || ||||| || Sbjct 553 AAAACTTATTGTGTTCTTGGGGGAATGCCCTCAGGTTGCTCAGGCACCTCCATTTTCAAC 494 Query 6796 TCTATGATTAATAATATAATTATTAGGACTTTAGT-ATTAGACACTTACAAAGGCATAGA 6854 || ||||| || ||||| |||||||| || | | |||| | || | |||||| ||||| Sbjct 493 TCGATGATCAACAATATCATTATTAGAACACTCCTGATTA-AAACATTCAAAGGGATAGA 435 Query 6855 TTTGGCTCAACTTAAAATTATTGCTTATGGTGATGATGTTATTTGC-AGTTATCCATT-T 6912 | | | | |||| || || | || || || ||||||| | || || ||||| || || Sbjct 434 TCTAGATGAACTGAACATGGTGGCCTACGGGGATGATG-TGTTGGCTAGTTACCCCTTCC 376 Query 6913 CAACTGGATG-CAGAACAGTTGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCC 6971 ||| || || | | ||||||||| |||||||||| ||||| || || ||||| || Sbjct 375 CAATTGACTGTCTG--GAGTTGGCAAGAACAGGCAAGGAGTATGGTCTAACTATGACCCC 318 Query 6972 ACCAGACAAGGGTGACTCT--TTTAATGA---TACAAACTGGGTTAATGTGACATTTCTC 7026 | ||||| || || || |||||||| |||| |||| |||| || || | Sbjct 317 TGCCGACAA--GTCACCCTGCTTTAATGAGGTTACA---TGGGAGAATGCCACTTTCTTG 263 Query 7027 AAGAGGTACTTCAGAGCTGATGAAGAGTATCCTTTTTTGGTGCACCCAGTTATGCCAATG 7086 ||||| ||| ||||| | | | || ||| | | ||||| ||||||||| Sbjct 262 AAGAGAGGATTCTTGCCTGATCATCAATTCCCGTTTCTCATCCACCCTACGATGCCAATG 203 Query 7087 AAGGAGATCCAGGAGTCCATTCGATGGACCCGTGAGGGCGCGGA-TATTAAAGACCACGT 7145 | |||||| || || |||||||| |||||| || || || | || | |||| ||||| Sbjct 202 AGGGAGATTCACGAATCCATTCGTTGGACCAAAGA-TGCACGAAGTACTCAAGATCACGT 144 Query 7146 CCGCAGCCTTTGCTACTTGGCCTGGCA 7172 ||| ||| |||| || || ||||| Sbjct 143 GCGCTCCCTCTGCTTATTAGCATGGCA 117 Score = 118 bits (130), Expect = 5e-23 Identities = 178/248 (72%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 4375 GGCTCACCTGGTAGTGGAAAGTCTTTAGCAACTAGTATGTTAGCTAGAGTATTAGTGGGC 4434 ||||| ||||||| ||| ||||| || ||||| | || | ||||||| ||| | | Sbjct 2863 GGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTGCTAGAGCCATAGCAGAC 2804 Query 4435 AAGTATGA-TGGAGAAGCATATTCACTCCCTCCAGACCCAAAACACTTTGACGGTTATCA 4493 ||||| | | || | ||||| | |||||||||||| | ||||||||||| || | Sbjct 2803 AAGTACCACTCCAGT-GTGTATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAA 2745 Query 4494 TCAACAAGAT-GTTGTTATAATGGATGATTTGGGGCAAAATCCGGATGGAGAGGATATGA 4552 |||| |||| || | | ||||| || | | ||||| || || || | || ||| Sbjct 2744 ACAAC-AGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGT 2686 Query 4553 AATTATTCTGTCAAATGGTGTCCACCGTGGAATTTAGACCTCCAATGGCATCATTGGAAG 4612 | |||| ||||| ||||| ||||| ||||| |||| ||| || |||||||| |||| | Sbjct 2685 CACTATTTTGTCAGATGGTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGG 2626 Query 4613 ATAAGGGA 4620 | |||||| Sbjct 2625 AGAAGGGA 2618 >seq1 Length=805 Score = 116 bits (128), Expect = 2e-22 Identities = 296/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 6754 GGTGGAATGCCATCAGGTTGTTCAGGGACGAGTATTTTTAATTCTATGATTAATAATATA 6813 ||||||||||| ||||| ||||| || || || |||||||| ||||| || || || Sbjct 268 GGTGGAATGCCCTCAGGATGTTCTGGTACTTCCATCTTTAATTCAATGATCAACAACATC 327 Query 6814 ATTATTAGGA--CTTTAGTATTAGACACTTACAAAGGCATAGATTTGGCTCAACTTAAAA 6871 || || || | |||| | || | | |||| || || ||||| ||| | | | || | Sbjct 328 ATCATCAGAACCCTTTTG-ATCA-AAACTTTTAAGGGAATAGACCTGGATGAGTTGAACA 385 Query 6872 TTATTGCTTATGGTGATGATGTTATTTGCAGTTATCCATTTCAACTGGATGCAGAACAGT 6931 | | || ||||| || ||||| | ||||| || |||| | ||| ||| Sbjct 386 TGGTGGCCTATGGGGACGATGTGCTGGCTAGTTACCCCTTTCCCATTGATTGCCTTGAGT 445 Query 6932 TGGCAAAGGCAGGCAAGGAATATGGCCTGACAATGACTCCACCAGACAAGGGTGACTCTT 6991 |||| ||| | ||||| || ||||| |||| |||||||| ||||||| || || Sbjct 446 TGGCTAAGACTGGCAAAGAGTATGGTTTGACCATGACTCCTGCAGACAAATCACCCTGTT 505 Query 6992 TTAATGATACAAACTGGGTTAATGTGACATTTCTCAAGAGGTACTTCAGAGCTGATGAAG 7051 | ||||| || |||| |||| || || || ||||| ||| | || | Sbjct 506 TCAATGAAGTAACATGGGAAAATGCTACCTTCCTGAAGAGAGGATTCTTGCCAGACCACC 565 Query 7052 AGTATCCTTTTTTGGTGCACCCAGTTATGCCAATGAAGGAGATCCAGGAGTCCATTCGAT 7111 | | ||| || || | ||||| ||||| |||| |||||||| || |||||||||| Sbjct 566 AATTTCCATTCTTAATTCACCCTACGATGCCCATGAGAGAGATCCATGAATCCATTCGAT 625 Query 7112 GGACCCGTGA-GGGCGCGGATATTAAAGACCACGTCCGCAGCCTTTGCTACTTGGCCTGG 7170 |||| || | |||| | | |||| ||||| ||| ||| || ||||| ||| Sbjct 626 GGACTAAAGACGCGCGC-AACACCCAAGATCACGTGCGCTCCCTGTGTCTGTTGGCATGG 684 Query 7171 CATTCAGGTCAGGAAGAATATGAG 7194 || ||| |||| ||||||||| Sbjct 685 CACAATGGTAAGGATGAATATGAG 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23458027421212