Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_033695.1 Length=7414 Score E Sequences producing significant alignments: (Bits) Value seq4083 178 6e-41 seq4303 84.2 1e-12 >seq4083 Length=3246 Score = 178 bits (196), Expect = 6e-41 Identities = 626/967 (65%), Gaps = 28/967 (3%) Strand=Plus/Minus Query 5743 TGTTTATGCCAGTCGGTGCAGTGAAGGATTATGGATACCTAAACCTTGCTGGTAGACCCA 5802 ||||| ||||||| || | ||| | ||||| | | |||||| ||||| |||| Sbjct 1602 TGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCCA 1543 Query 5803 CACACCGTACGCTCATGTACAACTTCCCAACTAGAGCGGGGCAGTGCGGTGGAGTTGCCG 5862 | ||| | || | |||||||| |||||||| | ||| || ||||| ||||| |||| Sbjct 1542 CTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGA 1483 Query 5863 TTTCTATGGGCAAGGTGATCGGCATCCACATTGGAGGTAATGGGGCTCAAGGATTCGCGG 5922 | |||| || ||||| || ||||||||||| || || || ||||| ||| | Sbjct 1482 CAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGCG 1423 Query 5923 CAGCTTTACTCCGTAGATACTT---CACTCAACCCCAGGGGGAGATTGAATTTATGGAGA 5979 | || | | ||||||| || | ||| | || ||||| ||| ||| || Sbjct 1422 CTGCCCTGAAGAGGGGATACTTTTGCAGTGAAC---AAGGTGAGATCCAATGGATGAAGC 1366 Query 5980 AGAGTAAAGATGCAGGCTACCCCATAATCAACGCCCCCACCAAGACCAAGCTCCACCCAA 6039 | ||||| | ||| | ||||||| || || || ||||| | |||| Sbjct 1365 CCAACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCACAAAGCTTGAACCAA 1306 Query 6040 GTGTGTTCTTTGATATCTTCCCAGGTGAGAAAGAGCCAGCAGTTCTCCACAAG-AAAGAT 6098 |||| || ||| | ||| ||| |||||||||||||| || || || ||||| Sbjct 1305 GTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTG-ACTAGTAAAGAC 1247 Query 6099 AAGAGGTTGGAAGTCGACTTCGAGGAGGCCCTCTTTTCCAAGTATATAGGCAACA---TC 6155 ||| ||||||| ||||| || |||| || ||||| || || | || |||| | Sbjct 1246 CCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTT 1187 Query 6156 CACAAGCCTGTC-ACTGAGGAAATGGAGATAGCGATAGATCATTATGCCAACCAACTTAA 6214 || | || | | | | | || |||| || || ||||||||||||||||| || Sbjct 1186 CATGAACCCGACGAGTTTGTCAA-GGAGGCGGCCTTA---CATTATGCCAACCAACTCAA 1131 Query 6215 ACAGCTGGATATCGACCCGACCCCCATCAGCATGGAGGATGCCATCTATGGCACTGAAGG 6274 ||| | |||||| | | ||| || |||||||||||||| || ||||| || Sbjct 1130 GCAGTTAGATATCAAGACCACCAAGATGAGCATGGAGGATGCATGTTACGGCACAGAGAA 1071 Query 6275 TTTGGAGGCGCTTGATCTCGGCACTAGTGCGGGTTATCCCTATGTGGCTCTTGGCATTAA 6334 |||| || | ||||| ||| ||||| || ||||| || || || ||||| || Sbjct 1070 CCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAA 1011 Query 6335 GAAGAGAGACATCCT-----CAACAAGGAGACTAGGGATGTGACAAAGATGCAGCAATGC 6389 ||| | ||||| | ||||| ||| | ||||| | |||||| | | | Sbjct 1010 GAAAAAGGACATTTTGGATCCAACA-----ACTCGCGATGTCAGCAAGATGAAATTCTAC 956 Query 6390 ATTGACAAGTATGGGCTCAACCTTCCCATGGTC-ACCTATGTGAAGGACGAGCTTAGATC 6448 || |||||||||||| | | | | || | || || ||||| || || || ||||| | Sbjct 955 ATGGACAAGTATGGGTTGGATC-TACCGTACTCTACTTATGTTAAAGATGAACTTAGGGC 897 Query 6449 AAAAGAGAAAGTGAAGAAGGGCAAAAGCCGACTCATCGAGGCGTCGAGTCTGAATGATTC 6508 | || || | ||||| || || || ||||| || ||| || || ||||| || Sbjct 896 CATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTC 837 Query 6509 CGTTGCGATGAGGTGCGCCTTCGGAAATCTCTATAAGGCATTTCACACAAACCCTGGCAC 6568 || |||| | || || | || ||| | || || ||| | || || || || Sbjct 836 AGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTAC 777 Query 6569 CCTGACTGGATGTGCTGTTGGGTGCAACCCTGAAACTTTTTGGAGCAAAATTCCAGTCAT 6628 | || || | ||||||||||||||||| || || |||||||| | ||| | | Sbjct 776 AATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCT 717 Query 6629 GATGGATGGGGAGCTCTTTGGCTTTGACTACACAGCGTACGATGCCAGTCTCTCCCCCGT 6688 | || ||| || | ||||||||| | | ||| || || |||||| ||| || Sbjct 716 ACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGT 657 Query 6689 CTGGTTC 6695 |||||| Sbjct 656 GTGGTTC 650 Score = 167 bits (184), Expect = 1e-37 Identities = 449/676 (66%), Gaps = 8/676 (1%) Strand=Plus/Minus Query 4095 TGGATAAAGAAGTTTACAGAAGCGGTGAATGCCTTTAAGGGTTTAGACTGGATTGCTGCC 4154 ||| |||||||||| | || |||| || |||| ||||| | || ||||| | | Sbjct 3238 TGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAAC 3179 Query 4155 AAATTTTCCAAATTCCTCGATTGGATCAAATCAAAAATAATTCCAGAACTTAGGGAAAGA 4214 ||| | ||||| |||||||| |||| ||||| || || | || || | | Sbjct 3178 AAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAAA 3119 Query 4215 GCAGAGTTTGTCAAGAACCTTAAGCAACTCCCGCTTCTTGAAGCTC-AGATCAATACGCT 4273 | |||||| | || || || ||||||||||| ||| ||| || | | || || || Sbjct 3118 GTCGAGTTTCTAAACAATCTAAAGCAACTCCC-CTTATTGGAGAACCAAATTTCTAATCT 3060 Query 4274 CGAGCACTCTAATCCCAACCAGGAGACCCAGGAACAATTGTTTTCAAACGTTCAGTACCT 4333 ||| || || | |||||| || || ||||| ||||| ||||| Sbjct 3059 CGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTACCT 3000 Query 4334 GGCTCACCACTGTAGGAAAAACGCCCCGCTCTACGCAGCAGAGGCGCGGAGGGTTTATGC 4393 ||| ||| ||| | ||| | || ||||| || | || || |||||| || || Sbjct 2999 GGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGC 2940 Query 4394 CCTGGAAAAACGAGT-ATTAGGCGCAATGCAGTTCAAGACCAAGAATCGAATTGAACCTG 4452 ||| ||||| || | | || || |||||||||||| ||| | || |||||||||| Sbjct 2939 CCTAGAAAAGAGAATGAATAATTACA-TGCAGTTCAAGAGCAAACACCGTATTGAACCTG 2881 Query 4453 TTTGCTGCCTCATCCATGGCACACCCGGCACCGGTAAGTCCCTTGCCACCACTATCATCG 4512 | ||| | ||| ||| | || || || || ||||| | || || || || | Sbjct 2880 TATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTG 2821 Query 4513 GTAGGAAGATCGCTGAATATGAGAACAGTGGGGTCTACAGCTTACCACCTGATCCTGACC 4572 ||| || || || | | || | || || |||||| || || || |||| Sbjct 2820 CTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACCCAGACC 2761 Query 4573 ACTTTGATGGATACCAAGAGCAGGCAGTGGTTATCATGGATGACCTCCACCAGAACCCAG 4632 ||||||| |||||| || | ||| || | | ||||| ||||| ||| ||||||| Sbjct 2760 ACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAG 2701 Query 4633 ACGGTAAGGACATGAGCCTATTTTGCCAGATGGTCTCCACGACTCCCTTTGTTGTC-CCA 4691 |||| || |||||| |||||||| |||||||||||||| | | ||| | | || Sbjct 2700 ACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCAC-AGTGGATTTTATACCGCCT 2642 Query 4692 ATGGCCGCTTTGGAGGATAAGGGCAGGCTC-TTCACCTCCAAATATGTATTGGCCTCGAC 4750 ||||| || ||||||| ||||| || ||| ||||||||||| | ||| | ||||| || Sbjct 2641 ATGGCATCTCTGGAGGAGAAGGG-AGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCAC 2583 Query 4751 CAACGCCAATCACATC 4766 ||||||| | ||||| Sbjct 2582 TAACGCCAGTAACATC 2567 >seq4303 Length=1160 Score = 84.2 bits (92), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 4419 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTCATCCATGGCACACCC 4478 ||||||||||||| ||| | || ||||||||||| || | |||| ||| |||| Sbjct 958 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCA 1017 Query 4479 GGCACCGGTAAGTCCCTTGCCACCACTATCATCGGTAGGAAGATCGCTGAATATGAGAAC 4538 ||||| || ||||||||||| ||| |||||| | | || || || || | | || Sbjct 1018 GGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCAC 1077 Query 4539 AGTGGGGTCTACAGCTTACCACCTGATCCTGACCACTTTGATGGATACCAAGAGCAGGCA 4598 | | || ||| | ||||| || |||||||| ||||| || || || |||| | Sbjct 1078 TCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCA---A 1134 Query 4599 GTGGTTA---TCATGGATGACCT 4618 ||||| | | |||||||| || Sbjct 1135 GTGGTCACAGTTATGGATGATCT 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23608419903656