Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_033695.1
Length=7414
Score E
Sequences producing significant alignments: (Bits) Value
seq4083 178 6e-41
seq4303 84.2 1e-12
>seq4083
Length=3246
Score = 178 bits (196), Expect = 6e-41
Identities = 626/967 (65%), Gaps = 28/967 (3%)
Strand=Plus/Minus
Query 5743 TGTTTATGCCAGTCGGTGCAGTGAAGGATTATGGATACCTAAACCTTGCTGGTAGACCCA 5802
||||| ||||||| || | ||| | ||||| | | |||||| ||||| ||||
Sbjct 1602 TGTTTGTGCCAGTTGGAGATGTGGTCCAGTATGGGTTTTTGAACCTTAGTGGTAAGCCCA 1543
Query 5803 CACACCGTACGCTCATGTACAACTTCCCAACTAGAGCGGGGCAGTGCGGTGGAGTTGCCG 5862
| ||| | || | |||||||| |||||||| | ||| || ||||| ||||| ||||
Sbjct 1542 CTCACAGGACTATGATGTACAATTTCCCAACAAAAGCAGGACAGTGTGGTGGTGTTGTGA 1483
Query 5863 TTTCTATGGGCAAGGTGATCGGCATCCACATTGGAGGTAATGGGGCTCAAGGATTCGCGG 5922
| |||| || ||||| || ||||||||||| || || || ||||| ||| |
Sbjct 1482 CAGCCGTGGGTAAAGTGATTGGGATCCACATTGGTGGCAACGGTAGGCAAGGTTTCTGCG 1423
Query 5923 CAGCTTTACTCCGTAGATACTT---CACTCAACCCCAGGGGGAGATTGAATTTATGGAGA 5979
| || | | ||||||| || | ||| | || ||||| ||| ||| ||
Sbjct 1422 CTGCCCTGAAGAGGGGATACTTTTGCAGTGAAC---AAGGTGAGATCCAATGGATGAAGC 1366
Query 5980 AGAGTAAAGATGCAGGCTACCCCATAATCAACGCCCCCACCAAGACCAAGCTCCACCCAA 6039
| ||||| | ||| | ||||||| || || || ||||| | ||||
Sbjct 1365 CCAACAAAGAAACTGGCAGGTTGAACATCAACGGACCTACTCGCACAAAGCTTGAACCAA 1306
Query 6040 GTGTGTTCTTTGATATCTTCCCAGGTGAGAAAGAGCCAGCAGTTCTCCACAAG-AAAGAT 6098
|||| || ||| | ||| ||| |||||||||||||| || || || |||||
Sbjct 1305 GTGTCTTTCACGATGTGTTCGAAGGCACTAAAGAGCCAGCAGTGCTG-ACTAGTAAAGAC 1247
Query 6099 AAGAGGTTGGAAGTCGACTTCGAGGAGGCCCTCTTTTCCAAGTATATAGGCAACA---TC 6155
||| ||||||| ||||| || |||| || ||||| || || | || |||| |
Sbjct 1246 CCAAGGCTGGAAGTTGACTTTGAACAGGCTCTTTTTTCAAAATACGTGGGGAACACGCTT 1187
Query 6156 CACAAGCCTGTC-ACTGAGGAAATGGAGATAGCGATAGATCATTATGCCAACCAACTTAA 6214
|| | || | | | | | || |||| || || ||||||||||||||||| ||
Sbjct 1186 CATGAACCCGACGAGTTTGTCAA-GGAGGCGGCCTTA---CATTATGCCAACCAACTCAA 1131
Query 6215 ACAGCTGGATATCGACCCGACCCCCATCAGCATGGAGGATGCCATCTATGGCACTGAAGG 6274
||| | |||||| | | ||| || |||||||||||||| || ||||| ||
Sbjct 1130 GCAGTTAGATATCAAGACCACCAAGATGAGCATGGAGGATGCATGTTACGGCACAGAGAA 1071
Query 6275 TTTGGAGGCGCTTGATCTCGGCACTAGTGCGGGTTATCCCTATGTGGCTCTTGGCATTAA 6334
|||| || | ||||| ||| ||||| || ||||| || || || ||||| ||
Sbjct 1070 CCTGGAAGCTATAGATCTTCACACAAGTGCAGGATATCCATACAGTGCACTAGGCATCAA 1011
Query 6335 GAAGAGAGACATCCT-----CAACAAGGAGACTAGGGATGTGACAAAGATGCAGCAATGC 6389
||| | ||||| | ||||| ||| | ||||| | |||||| | | |
Sbjct 1010 GAAAAAGGACATTTTGGATCCAACA-----ACTCGCGATGTCAGCAAGATGAAATTCTAC 956
Query 6390 ATTGACAAGTATGGGCTCAACCTTCCCATGGTC-ACCTATGTGAAGGACGAGCTTAGATC 6448
|| |||||||||||| | | | | || | || || ||||| || || || ||||| |
Sbjct 955 ATGGACAAGTATGGGTTGGATC-TACCGTACTCTACTTATGTTAAAGATGAACTTAGGGC 897
Query 6449 AAAAGAGAAAGTGAAGAAGGGCAAAAGCCGACTCATCGAGGCGTCGAGTCTGAATGATTC 6508
| || || | ||||| || || || ||||| || ||| || || ||||| ||
Sbjct 896 CATCGACAAGATCAAGAAAGGGAAGTCTCGTCTCATAGAAGCGAGCAGCCTAAATGACTC 837
Query 6509 CGTTGCGATGAGGTGCGCCTTCGGAAATCTCTATAAGGCATTTCACACAAACCCTGGCAC 6568
|| |||| | || || | || ||| | || || ||| | || || || ||
Sbjct 836 AGTGTACTTGAGAATGACATTTGGGCACCTTTATGAAGCTTTCCACGCCAATCCAGGTAC 777
Query 6569 CCTGACTGGATGTGCTGTTGGGTGCAACCCTGAAACTTTTTGGAGCAAAATTCCAGTCAT 6628
| || || | ||||||||||||||||| || || |||||||| | ||| | |
Sbjct 776 AATCACCGGTTCAGCTGTTGGGTGCAACCCAGATGTGTTCTGGAGCAAGTTACCAATTCT 717
Query 6629 GATGGATGGGGAGCTCTTTGGCTTTGACTACACAGCGTACGATGCCAGTCTCTCCCCCGT 6688
| || ||| || | ||||||||| | | ||| || || |||||| ||| ||
Sbjct 716 ACTCCCAGGATCGCTTTTCGCGTTTGACTACTCGGGGTATGACGCTAGTCTCAGCCCAGT 657
Query 6689 CTGGTTC 6695
||||||
Sbjct 656 GTGGTTC 650
Score = 167 bits (184), Expect = 1e-37
Identities = 449/676 (66%), Gaps = 8/676 (1%)
Strand=Plus/Minus
Query 4095 TGGATAAAGAAGTTTACAGAAGCGGTGAATGCCTTTAAGGGTTTAGACTGGATTGCTGCC 4154
||| |||||||||| | || |||| || |||| ||||| | || ||||| | |
Sbjct 3238 TGGTTAAAGAAGTTCAACGATGCGGCGAGTGCCGCGAAGGGGCTTGAGTGGATCTCCAAC 3179
Query 4155 AAATTTTCCAAATTCCTCGATTGGATCAAATCAAAAATAATTCCAGAACTTAGGGAAAGA 4214
||| | ||||| |||||||| |||| ||||| || || | || || | |
Sbjct 3178 AAAATCAGTAAATTTATCGATTGGCTCAAGGAGAAAATCATACCGGCTGCTAAAGAGAAA 3119
Query 4215 GCAGAGTTTGTCAAGAACCTTAAGCAACTCCCGCTTCTTGAAGCTC-AGATCAATACGCT 4273
| |||||| | || || || ||||||||||| ||| ||| || | | || || ||
Sbjct 3118 GTCGAGTTTCTAAACAATCTAAAGCAACTCCC-CTTATTGGAGAACCAAATTTCTAATCT 3060
Query 4274 CGAGCACTCTAATCCCAACCAGGAGACCCAGGAACAATTGTTTTCAAACGTTCAGTACCT 4333
||| || || | |||||| || || ||||| ||||| |||||
Sbjct 3059 CGAACAGTCAGCAGCTTCGCAGGAGGACCTTGAGGCGATGTTTGGCAACGTGTCTTACCT 3000
Query 4334 GGCTCACCACTGTAGGAAAAACGCCCCGCTCTACGCAGCAGAGGCGCGGAGGGTTTATGC 4393
||| ||| ||| | ||| | || ||||| || | || || |||||| || ||
Sbjct 2999 GGCCCACTTCTGCCGCAAATTCCAACCCCTCTATGCCACGGAAGCAAAGAGGGTGTACGC 2940
Query 4394 CCTGGAAAAACGAGT-ATTAGGCGCAATGCAGTTCAAGACCAAGAATCGAATTGAACCTG 4452
||| ||||| || | | || || |||||||||||| ||| | || ||||||||||
Sbjct 2939 CCTAGAAAAGAGAATGAATAATTACA-TGCAGTTCAAGAGCAAACACCGTATTGAACCTG 2881
Query 4453 TTTGCTGCCTCATCCATGGCACACCCGGCACCGGTAAGTCCCTTGCCACCACTATCATCG 4512
| ||| | ||| ||| | || || || || ||||| | || || || || |
Sbjct 2880 TATGCCTAATTATCAGAGGCTCGCCTGGTACTGGGAAGTCATTGGCAACAGGGATTATTG 2821
Query 4513 GTAGGAAGATCGCTGAATATGAGAACAGTGGGGTCTACAGCTTACCACCTGATCCTGACC 4572
||| || || || | | || | || || |||||| || || || ||||
Sbjct 2820 CTAGAGCCATAGCAGACAAGTACCACTCCAGTGTGTATTCCTTACCTCCAGACCCAGACC 2761
Query 4573 ACTTTGATGGATACCAAGAGCAGGCAGTGGTTATCATGGATGACCTCCACCAGAACCCAG 4632
||||||| |||||| || | ||| || | | ||||| ||||| ||| |||||||
Sbjct 2760 ACTTTGACGGATACAAACAACAGATCGTCACTGTTATGGACGACCTATGCCAAAACCCAG 2701
Query 4633 ACGGTAAGGACATGAGCCTATTTTGCCAGATGGTCTCCACGACTCCCTTTGTTGTC-CCA 4691
|||| || |||||| |||||||| |||||||||||||| | | ||| | | ||
Sbjct 2700 ACGGGAAAGACATGTCACTATTTTGTCAGATGGTCTCCAC-AGTGGATTTTATACCGCCT 2642
Query 4692 ATGGCCGCTTTGGAGGATAAGGGCAGGCTC-TTCACCTCCAAATATGTATTGGCCTCGAC 4750
||||| || ||||||| ||||| || ||| ||||||||||| | ||| | ||||| ||
Sbjct 2641 ATGGCATCTCTGGAGGAGAAGGG-AGTCTCATTCACCTCCAAGTTTGTGATTGCCTCCAC 2583
Query 4751 CAACGCCAATCACATC 4766
||||||| | |||||
Sbjct 2582 TAACGCCAGTAACATC 2567
>seq4303
Length=1160
Score = 84.2 bits (92), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 4419 ATGCAGTTCAAGACCAAGAATCGAATTGAACCTGTTTGCTGCCTCATCCATGGCACACCC 4478
||||||||||||| ||| | || ||||||||||| || | |||| ||| ||||
Sbjct 958 ATGCAGTTCAAGAGCAAACACCGTATTGAACCTGTATGTCTCATCATTAGAGGCTCACCA 1017
Query 4479 GGCACCGGTAAGTCCCTTGCCACCACTATCATCGGTAGGAAGATCGCTGAATATGAGAAC 4538
||||| || ||||||||||| ||| |||||| | | || || || || | | ||
Sbjct 1018 GGCACTGGAAAGTCCCTTGCGACCGGTATCATTGCTCGGGTCATAGCAGACAAGTATCAC 1077
Query 4539 AGTGGGGTCTACAGCTTACCACCTGATCCTGACCACTTTGATGGATACCAAGAGCAGGCA 4598
| | || ||| | ||||| || |||||||| ||||| || || || |||| |
Sbjct 1078 TCTAGTGTGTACTCACTTCCACCAGACCCTGACCATTTTGACGGGTATAAACAGCA---A 1134
Query 4599 GTGGTTA---TCATGGATGACCT 4618
||||| | | |||||||| ||
Sbjct 1135 GTGGTCACAGTTATGGATGATCT 1157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 23608419903656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |