Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_033820.1 Length=7746 Score E Sequences producing significant alignments: (Bits) Value seq4083 98.7 5e-17 >seq4083 Length=3246 Score = 98.7 bits (108), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 4741 TATTCCTTACCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA-- 4798 ||||||||||| ||||||||| | | ||||| || || | | ||| | | |||| Sbjct 2785 TATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAA---CAACAGATCGTCACT 2729 Query 4799 -TTATGGATGATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATG 4857 ||||||| || || |||| |||||||| || | |||||||| | |||||||||||| Sbjct 2728 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2669 Query 4858 GTTTCAACTGTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTT 4917 || || || || ||| || || || ||||| || | || || ||||| || | || Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2609 Query 4918 CTTTCTGAGTTTGTGTTAGCTTCCACCAA 4946 || |||||||| | || ||||| || Sbjct 2608 ACCTCCAAGTTTGTGATTGCCTCCACTAA 2580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24670766800920