Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_033820.1
Length=7746
Score E
Sequences producing significant alignments: (Bits) Value
seq4083 98.7 5e-17
>seq4083
Length=3246
Score = 98.7 bits (108), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 4741 TATTCCTTACCCCCAGACCCAAAATATTTTGATGGTTATACAGGGCAAAATGTGGTCA-- 4798
||||||||||| ||||||||| | | ||||| || || | | ||| | | ||||
Sbjct 2785 TATTCCTTACCTCCAGACCCAGACCACTTTGACGGATACAAA---CAACAGATCGTCACT 2729
Query 4799 -TTATGGATGATTTAGGCCAGAACCCAGATGGTGAGGACATGTCTTTGTTTTGTCAGATG 4857
||||||| || || |||| |||||||| || | |||||||| | ||||||||||||
Sbjct 2728 GTTATGGACGACCTATGCCAAAACCCAGACGGGAAAGACATGTCACTATTTTGTCAGATG 2669
Query 4858 GTTTCAACTGTCCCTTTCATCCCACCCATGGCTTCATTAGAAGATAAGGGTGTTCCTTTT 4917
|| || || || ||| || || || ||||| || | || || ||||| || | ||
Sbjct 2668 GTCTCCACAGTGGATTTTATACCGCCTATGGCATCTCTGGAGGAGAAGGGAGTCTCATTC 2609
Query 4918 CTTTCTGAGTTTGTGTTAGCTTCCACCAA 4946
|| |||||||| | || ||||| ||
Sbjct 2608 ACCTCCAAGTTTGTGATTGCCTCCACTAA 2580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 24670766800920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |