Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001430.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq887 343 7e-91 >seq887 Length=1012 Score = 343 bits (380), Expect = 7e-91 Identities = 653/938 (70%), Gaps = 54/938 (6%) Strand=Plus/Plus Query 391 CCATGGGACGCT--AGTTGTGAACAAGGTGCGAAGAGCCTATTGAGCTACCTGAGAGTCC 448 |||||||||||| | || ||| || |||| |||||||||||||||||| ||| ||||| Sbjct 4 CCATGGGACGCTCTAATTCTGA-CATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCC 62 Query 449 TCCGGCCCCTGAATGCGGCTAATCCCAACCACGGAGCAAATGCTCACAATCCAGTGAGTG 508 ||||||||||||||||||||||||| ||| ||||||| |||||||| | |||||| ||| Sbjct 63 TCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTG 122 Query 509 GTTTGTCGTAATGCGCAAGTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTT 568 || |||||||| | |||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 123 GTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTT 182 Query 569 TTATTTTTATTATGGCTGCTTATGGTGACAATCTGAGA-TTGTTATCATATAGCTATTGG 627 ||||| |||| ||||||||||||||||||||| ||| |||||| |||||||||||||| Sbjct 183 TTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATTGG 242 Query 628 ATTAGCCATCCG--GTGATATCTTGAAATTTTGCCATAACTTTTTCACAAATCCTACAAC 685 ||| |||||||| ||| | | |||| | | || | || | | | | | Sbjct 243 ATTGGCCATCCGGTGTGCAACAGGGCAATTGT----TTACCTATTTATTGGTTTTGTACC 298 Query 686 ATTA-CACTACACTTT-------CTCTTGAA-TAATTGAGA----CAAC----TCATA-A 727 |||| |||| | | | |||| || | ||| || |||| ||| | | Sbjct 299 ATTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACA 358 Query 728 TGGGAGCACAAGTTTCTAGACAACAAACTGGCACGCATGAGAATGCTAACGTTGCCACTG 787 |||| |||| || || | ||||| | || | || || || ||||| || || | Sbjct 359 TGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTACCG 418 Query 788 GAGGCTCAAGCATAACTTACAATCAAATAAATTTCTACAAAGATAGTTATGCAGCCTCAG 847 || || | |||| || | | || |||| ||| |||||| ||||| ||| ||| Sbjct 419 AGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACAG 478 Query 848 CTAGTAAACA-AGATTTCAGCCAAGACCCATCCAAGTTCACAGAGCCTGT---AG-CTGA 902 | |||| || || || || || |||||| |||||| || | ||||| || | Sbjct 479 CAGGTAAGCAGAGCCTTAAG-CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATC 537 Query 903 AGCCCTAAAAGCTGG-AGCCCCAGTCCTAAAATCACCATCAGCAGAGGCTTGTGGTTATA 961 | || ||| ||| ||| ||| ||||||| ||||| || ||||| |||||||| | Sbjct 538 TTCACTGAAA--TGGCAGCGCCA---TTAAAATCTCCATCTGCTGAGGCATGTGGTTACA 592 Query 962 GTGACAGGGTCTTACAGCTCAAATTAGGAAATTCCAGTATAGTTACCCAAGAAGCAGCTA 1021 |||| |||| ||| | | | || ||||| | || ||| ||||||||||| | Sbjct 593 GTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAA 652 Query 1022 ACAT--TTGTTGTGCCTATGGAGAGTGGCCCACCTATCTACCTGATAATGAGGCAGTGGC 1079 |||| | || || |||||| |||||||| |||| | || ||| || || Sbjct 653 ACATCATAGT--TGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGC 710 Query 1080 TATTGATAAACCTACCCAGCCAGAAACATCCACAGATAGATTTTACACTTTAAAATCCAA 1139 | || ||||| || | ||||| || |||| |||||||| || | | || Sbjct 711 AGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAA 770 Query 1140 GAAATGGGA-AAG-CAACAGTACTGGGTGGTGGTGGAAGCTCCCTGATGCTTTGAATCAA 1197 ||||| ||| || | | ||||||| ||||| |||| |||| || | | || Sbjct 771 ATTGTGGGAGAAGTCATC--CAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAA 828 Query 1198 ATTGGTATGTTTGGTCAAAACGTCCAATACCACTACCTGTATAGGAGTGGGTTCCTGTGC 1257 | || | ||||||||||| | || | ||||||||| ||| || |||||| ||| Sbjct 829 ACCGGGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTC---TGC 885 Query 1258 ---CACGTACAATGCAATGCTACAAAATTTCACCAAGG 1292 ||||| || |||||||||| || || |||||||| Sbjct 886 ATTCACGTGCAGTGCAATGCTAGTAAGTTCCACCAAGG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23529930439784