Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001472.1 Length=7389 Score E Sequences producing significant alignments: (Bits) Value seq887 410 6e-111 >seq887 Length=1012 Score = 410 bits (454), Expect = 6e-111 Identities = 658/931 (71%), Gaps = 18/931 (2%) Strand=Plus/Plus Query 387 AACCCGTAGGACGCTCTAATACAGACATGGTGCGAAGAGTCTATTGAGCTAGTTGGTAAT 446 || || | |||||||||||| | ||||||||| |||||| |||||||||||| ||||| | Sbjct 1 AATCCATGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGT 60 Query 447 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATACCCTCAAACCAGGGGG 506 ||||||||||||||||||||||||||||||||||||||||||| | | | |||||| ||| Sbjct 61 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGG 120 Query 507 CAGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCA 566 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCC 180 Query 567 TTTTATTCCTATACTGGCTGCTTATGGTGACAATTGACAGGTTGTTACCATATAGTTATT 626 |||||||| |||| |||||||||||||||||||| | ||||||||||||||| |||| Sbjct 181 TTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTATT 240 Query 627 GGATTGGCCATCCGGTGACTAACAGAGCAATTATATATCTCTTTGTTGGGTTTATACCAC 686 ||||||||||||||||| ||||| |||||| | || || ||| |||| ||| ||||| Sbjct 241 GGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCA- 299 Query 687 TTAGC-TTGAAAGAGGTTAAAACACTACATCTCATCATTAAACTAAATACAA-CAAA-AT 743 ||| | |||| || | || || | |||| | | || || |||| |||| || Sbjct 300 TTATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAACAT 359 Query 744 GGGGGCTCAAGTATCAACACAAAAGACTGGAGCACATGAGACCGGGCTGAAT--GCAAGC 801 ||| | || || || |||||| | || |||| || | | || | | || | | Sbjct 360 GGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAAC--TCTAACTCAGCTACC 417 Query 802 GGGAATTCCATCATCCATTACACAAACATAAACTACTATAAAGATGC---TGCATCCAAC 858 | | ||||| || | || || | ||| || |||||||||||| | ||| ||| Sbjct 418 GAGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCACA 477 Query 859 TCAGCCAA-CAGACAGGATTTCACTCAAGACCCAGGTAAATTTACTGAGCCAGTGAAGGA 917 ||| || ||| || || | || ||||||| || ||| | | || || || || Sbjct 478 GCAGGTAAGCAG--AGCCTT--AAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGA 533 Query 918 CATTATGA-TCAAATCGATGCCAGCATTGAACTCCCCCTCTGCCGAAGAGTGTGGTTATA 976 ||| | | | |||| | | | |||| || || || ||||| || | |||||||| | Sbjct 534 CATCTTCACTGAAATGGCAG-CGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACA 592 Query 977 GTGACAGGGTTCGATCAATAACCCTCGGGAACTCCACTATCACAACACAGGAGTGTGCTA 1036 |||| |||| | | |||| | || || || || ||||| || || || || | Sbjct 593 GTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAA 652 Query 1037 ATGTTGTGGTTGGGTATGGTGTGTGGCCAGAATATTTGAAGGACAATGAAGCCACAGGCG 1096 | | | ||||| ||||||| |||||| || | |||| ||| ||||| | | Sbjct 653 ACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAG 712 Query 1097 AGGACCAACCAACACAACCCGACGTGGCCACATGTCGGTTCTACACTTTAGAGTCCGTGC 1156 |||| ||||||| | || || || | | |||| ||||| || || | Sbjct 713 TGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAAT 772 Query 1157 AGTGGATGAAGAATTCAGCAGGTTGGTGGTGGAAGTTACCAGATGCACTTTCACAAATGG 1216 |||| |||| || || |||| ||||| || || |||| | | ||| | Sbjct 773 TGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCG 832 Query 1217 GGTTGTTTGGACAAAATATGCAGTACCACTACTTAGGGAGAACAGGCTACACCATCCACG 1276 || | ||||| |||||| |||| ||||||| | | |||| | | ||| |||| Sbjct 833 GGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACG 892 Query 1277 TGCAGTGCAACGCATCTAAGTTTCATCAGGG 1307 |||||||||| || |||||| || || || Sbjct 893 TGCAGTGCAATGCTAGTAAGTTCCACCAAGG 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23526730829988