Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001490.1 Length=7212 Score E Sequences producing significant alignments: (Bits) Value seq887 136 2e-28 >seq887 Length=1012 Score = 136 bits (150), Expect = 2e-28 Identities = 159/209 (76%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 399 TGGGACGCCCTTTTAAGGACATGGTGTGAAGACTCGCATGTGCTTGGTTGTGAGTCCTCC 458 |||||||| || | ||||||||||||||| | || ||| | | || |||||||| Sbjct 7 TGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGT-AGTCCTCC 65 Query 459 GGCCCCTGAATGCGGCTAACCTTAACCCTAGAGCCTTATGC-CACGATCCAGTGGTTGTA 517 ||||||||||||||||||| | |||| |||| |||| ||||| ||||||| || Sbjct 66 GGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCAC-ATGCTCACGAACCAGTGGGTGGT 124 Query 518 AGGTCGTAATGAGCAATTCCGGGACGGGACCGACTACTTTGGGTGTCCGTGTTTCTCATT 577 ||||||| | |||| || | ||| ||||||||||||||||||||||||||| || Sbjct 125 GTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTT 184 Query 578 TTTCTTCATATTG---TCTTATGGTCACA 603 ||||| |||||| |||||||| ||| Sbjct 185 ATTCTT-ATATTGGCTGCTTATGGTGACA 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22960399896096