Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001612.1 Length=7413 Score E Sequences producing significant alignments: (Bits) Value seq887 702 0.0 seq925 379 1e-101 >seq887 Length=1012 Score = 702 bits (778), Expect = 0.0 Identities = 740/964 (77%), Gaps = 15/964 (2%) Strand=Plus/Plus Query 393 AACCCACAGGACGCTCTAATATGGACATGGTGCAAAGAGTCTATTGAGCTAGTTAGTAGT 452 || ||| |||||||||||| ||||||||| ||||| |||||||||||| | ||||| Sbjct 1 AATCCATGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGT 60 Query 453 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATACCCTCGACCCAGGGGG 512 ||||||||||||||||||||||||||||||||||||||||||| | | ||| |||| ||| Sbjct 61 CCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGG 120 Query 513 CAGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCC 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCC 180 Query 573 TTTTATTCTTATACTGGCTGCTTATGGTGACAATTGAAAGA-TTGTTACCATATAGCTAT 631 ||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||||| Sbjct 181 TTTTATTCTTATATTGGCTGCTTATGGTGACAA-TCAAAGAGTTGTTACCATATAGCTAT 239 Query 632 TGGATTGGCCATCCGGTGTGCAACAGAGCTATTATTTACCTATTTGTTGGGTATATACCA 691 |||||||||||||||||||||||||| || ||| ||||||||||| |||| | | ||||| Sbjct 240 TGGATTGGCCATCCGGTGTGCAACAGGGCAATTGTTTACCTATTTATTGGTTTTGTACCA 299 Query 692 CTCACATCCAGAAAAACCCTCGACACACTAGTATACATTCTTTACTTGAATTC--TAGAA 749 | ||| || | | ||| || || |||| | | | || | | || Sbjct 300 TT---ATCACTGAAGTCTGTGATCACTCTCAAATTCATTTTGACCCTCAACACAATCAAA 356 Query 750 AATGGGGTCACAAGTCTCAACCCAACGATCGGGTTCCCACGAAAATTCGAACTCAGCATC 809 ||||| ||||| || || || ||||| || ||||| |||||||| || |||||||| | Sbjct 357 CATGGGCTCACAGGTGTCCACACAACGCTCCGGTTCACACGAAAACTCTAACTCAGCTAC 416 Query 810 AGAAGGATCTACTATAAACTACACCACCATCAACTATTACAAGGATGCATATGCTGCCAG 869 || || || ||||||||||| || ||||| || || || || ||| | ||||| |||| Sbjct 417 CGAGGGTTCCACTATAAACTATACTACCATTAATTACTATAAAGATTCCTATGCCGCCAC 476 Query 870 CGCGGGT-CGCCAAG--ATATGTCTCAGGACCCTAAGAAATTTACAGACCCTGTGATGGA 926 || ||| || || || | |||||||| | || ||| || | ||||| | || Sbjct 477 AGCAGGTAAGCAGAGCCTTAAG---CAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGA 533 Query 927 TGTCATACAC-GAGATGGCTCCTCCCTTGAAATCACCCAGTGCTGAAGCTTGTGGTTATA 985 || | ||| || ||||| | || || ||||| || |||||| || |||||||| | Sbjct 534 CATC-TTCACTGAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACA 592 Query 986 GTGATCGAGTTGCCCAACTCACAATTGGAAACTCCACAATCACTACACAAGAAGCTGCAA 1045 ||||||| || || ||| | || ||||| || || || |||||||| |||||||| |||| Sbjct 593 GTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAA 652 Query 1046 ACATTATAATAGCATATGGGGAATGGCCCGAGTATTGCAAGGACGCTGATGCCACAGCTG 1105 |||| ||| | | ||||| || ||||| || || |||| |||||||||| || | Sbjct 653 ACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAG 712 Query 1106 TTGACAAGCCCACCAGACCCGATGTGTCGGTAAATAGGTTCTTCACCCTTGATACTAAAT 1165 | ||||| || || | || ||||| ||||| |||||||| | ||| | || || |||| Sbjct 713 TGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAAT 772 Query 1166 CGTGGGCTAAAGACTCGAAGGGATGGTACTGGAAATTCCCGGACGTTTTGACGGAGGTGG 1225 ||||| || || ||||| |||||||||||||||||||| || || || || | Sbjct 773 TGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCG 832 Query 1226 GCGTGTTTGGGCAGAATGCGCAATTCCATTATCTGTATAGATCCGGATTCTGTGTGCACG 1285 | || ||||| || ||||| || ||||| || || ||| | || || ||||| | |||| Sbjct 833 GGGTCTTTGGTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACG 892 Query 1286 TGCAGTGCAATGCCAGCAAATTCCACCAGGGTGCTCTCTTGGTTGCCATACTGCCTGAGT 1345 ||||||||||||| || || |||||||| || || ||| | || || | || || |||| Sbjct 893 TGCAGTGCAATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGTCGCTGTCCTCCCAGAGT 952 Query 1346 ACGT 1349 | || Sbjct 953 ATGT 956 >seq925 Length=970 Score = 379 bits (420), Expect = 1e-101 Identities = 650/936 (69%), Gaps = 18/936 (2%) Strand=Plus/Minus Query 2602 GGCGCCTCTTCTAATGCACAGGATGAGAATCTTATAGAAACCCGGTGTGTGTTGAACCAT 2661 || || || || ||||| ||||||| | | || || || |||||||| | || Sbjct 927 GGAGCATCATCAAATGCTAGTGATGAGAGTATGATTGAGACACGGTGTGTTCTTAATTCA 868 Query 2662 CACTCCACTCAAGAGACCACGATTGGCAACTTTTTCAGTCGAGCAGGACTAGT--GAGTA 2719 || ||| |||||||| ||| | ||| ||||| |||||||| |||| ||| Sbjct 867 CATAGCACAGCTGAGACCACTCTTGATAGCTTCTTCAGCAGAGCAGGATTAGTTGGAGAG 808 Query 2720 TTATTACCATGCCCACCACAGGTACCCAAAACACCGATGGGTATGTGAACTGGGATATTG 2779 || ||| | | | ||| || ||| | ||||||| | |||||||| || | Sbjct 807 ATAG-ACCTCCCTCTTGA-AGGCACAACCAACCCGAATGGGTACGCAAACTGGGACATAG 750 Query 2780 ACTTGATGGGTTATGCTCAAATGAGGCGTAAGTGTGAGCTATTCACATACATGCGCTTTG 2839 || | | ||||| || |||||| | | ||| ||||| ||||| |||||||| |||| Sbjct 749 ACATAACAGGTTACGCGCAAATGCGTAGAAAGGTGGAGCTGTTCACCTACATGCGTTTTG 690 Query 2840 ATGCAGAGTTTACATTTGTAGCTGCCAAACCAAACGGTGAGCTAGTACCACAATTGTTGC 2899 | |||||||| || ||||| || || || | ||| || | || || |||||| | | Sbjct 689 ACGCAGAGTTCACCTTTGTTGCATGCACCCCTACCGGGGAAGTTGTCCCGCAATTGCTCC 630 Query 2900 AGTACATGTATGTGCCTCCCGGAGCTCCAAAACCTACGTCCCGGGATTCCTTTGCCTGGC 2959 | ||||||| ||| || |||||||| || || || ||| | || || | || |||| Sbjct 629 AATACATGTTTGTACCACCCGGAGCCCCCAAGCCAGACTCCAGAGAATCTCTCGCATGGC 570 Query 2960 AGACTGCTACCAATCCTTCCATCTTCGTCAAGTTGACTGACCCCCCGGCACAAGTGTCAG 3019 | ||||| |||||||| || | || || ||| || | |||||||| |||||||| || | Sbjct 569 AAACTGCCACCAATCCCTCAGTTTTTGTGAAGCTGTCAGACCCCCCAGCACAAGTTTCTG 510 Query 3020 TACCCTTCATGTCTCCCGCCAGCGCCTACCAGTGGTTTTACGATGGCTATCCAACGTTTG 3079 | || |||||||| || || |||||||| || |||||||| || || ||||| || || | Sbjct 509 TTCCATTCATGTCACCTGCGAGCGCCTATCAATGGTTTTATGACGGGTATCCCACATTCG 450 Query 3080 GAGCCCATCCACAATCGAATGACGCAGACTATGGCCAATGTCCAAACAACATGATGGGCA 3139 | | || ||| ||| ||| || || || ||| ||||||||||||||||| | Sbjct 449 GTGAACACAAACAGGAGAAAGACCTTGAATACGGGGCATGCCCAAACAACATGATGGGTA 390 Query 3140 CCTTTAGCATCAGAACTGTAGGCACTGAGAAATCC----CCCCATT--CTATCACCCTTC 3193 | || | | ||||||||||| ||| ||| |||||| |||| Sbjct 389 CGTTCTCAGTGCGGACTGTAGGCACCTCGAAGTCCAAGTACCCATTGGTGATCA------ 336 Query 3194 GGGTGTATATGAGAATCAAGCATGTCAGGGCCTGGATACCCCGGCCACTCAGAAACCAAC 3253 || | || ||||| || ||||| |||||||| |||||||| || ||| | | ||||| Sbjct 335 GGATTTACATGAGGATGAAGCACGTCAGGGCGTGGATACCTCGCCCAATGCGTAACCAGA 276 Query 3254 CGTACCTTTTTAAGACAAATCCAAATTATAAAGGCAACGACATCAAATGCACCAGCACAA 3313 || || || || | || ||||||||| || || || ||| || | | | Sbjct 275 ACTATCTATTCAAAGCCAACCCAAATTATGCTGGTAATTCTATTAAACCAACTGGTGCCA 216 Query 3314 GTAGGGACA-AAATAACAACACTAGGAAAATTTGGCCAGCAATCTGGTGCTATTTACGTG 3372 || | ||| ||| || || || || |||||||| ||||| || || ||||| |||||| Sbjct 215 GT-CGCACAGCAATCACCACCCTCGGGAAATTTGGACAGCAGTCCGGAGCTATCTACGTG 157 Query 3373 GGTAACTATAGAGTGGTCAATCGTCACTTGGCCACGCACAATGACTGGGCCAATTTAGTA 3432 || |||| ||||||||| || || || | || || || ||||||||||| || | || Sbjct 156 GGCAACTTTAGAGTGGTTAACCGCCATCTTGCTACTCATAATGACTGGGCAAACCTTGTT 97 Query 3433 TGGGAAGACAGCTCAAGGGATCTTTTAGTCTCCTCCACCACTGCACAGGGATGTGACACT 3492 |||||||||||||| | || | | || || || |||||||| || || |||||||| Sbjct 96 TGGGAAGACAGCTCCCGCGACTTGCTCGTATCATCTACCACTGCTCAAGGCTGTGACACG 37 Query 3493 ATTGCTCGATGCGATTGTCAAACGGGGGTGTATTAT 3528 |||||||| ||| |||| || || || ||||||||| Sbjct 36 ATTGCTCGTTGCAATTGCCAGACAGGAGTGTATTAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23603521465092