Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001617.1 Length=7152 Score E Sequences producing significant alignments: (Bits) Value seq887 109 3e-20 >seq887 Length=1012 Score = 109 bits (120), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 397 CTAATTATTGACAAGGTGTGAAGAGCCGCGTGTGCTCAGTGTGCTTCCTCCGGCCCCTGA 456 |||||| | |||| ||||||||||||| || ||| || ||||||||||||||| Sbjct 16 CTAATTCT-GACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCGGCCCCTGA 74 Query 457 ATGTGGCTAACCTTAACCCTGCAGCCGTTGCCCATAATCCAATGGGTTTGCGGTCGTAAT 516 ||| |||||| | |||| | ||| ||| || | ||| ||||| ||||||| Sbjct 75 ATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAAC 134 Query 517 GCGTAAGTGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCCTGTTTTTCTTTTGA 576 | | || | | || ||| ||||||||||||||||||||||||| || ||||| | Sbjct 135 GGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTTTTATTCTTATAT 194 Query 577 TTGCATTTTATGGTGACAAT 596 | || ||||||||||||| Sbjct 195 TGGCTGCTTATGGTGACAAT 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22768423308336