Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_001859.1 Length=7414 Score E Sequences producing significant alignments: (Bits) Value seq887 116 2e-22 >seq887 Length=1012 Score = 116 bits (128), Expect = 2e-22 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 1017 CCACTTAAGTCACCAAGCGCAGAAGCGTGCGGTTACAGTGATCGCGTAGCCCAGTTGACA 1076 ||| | || || ||| || || || || |||||||||||||| || || || || || Sbjct 556 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 615 Query 1077 CTTGGCAACAGCACTATCACTACCCAAGAGGCAGCAAATATATGCGTTGCTTATGGCTGC 1136 ||||||| || |||||||| ||||| |||||||| || |||| ||||| Sbjct 616 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 675 Query 1137 TGGCCTGCAAAGCTTAGCGACACTGATGCCACATCAGTGGACAAGCCCACTGAACCAGGT 1196 |||||| | | | ||| |||||||||| |||||||||| || || |||| | Sbjct 676 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 735 Query 1197 GTATCAGCGGAGCGCTTTTATACCCTCCGTTCCAAGCCGTGGCAGGCAGATA-GCAAGGG 1255 || || | | | | ||||| || | | || |||| | | || | |||||| Sbjct 736 GTTTCGGTGAATAGGTTTTACACATTGGACACAAAATTGTGGGA-GAAGTCATCCAAGGG 794 Query 1256 GTGGTATTGGAAGCTACCCGATGCACTCAACAATACAGGAATGTTTGGACAGAACGCCCA 1315 |||||| ||||| | || |||| | | | || || | ||||| || || || || Sbjct 795 GTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATGCACA 854 Query 1316 GTTCCACTACATCTATAGAGGTGGG-TGGGCAGTGCACGTCCAATGCAATGCAACCAAAT 1374 |||||||||| ||||| | ||| | ||| | ||||| || |||||||| | || | Sbjct 855 GTTCCACTACCTCTATCGGTCAGGGTTCTGCA-TTCACGTGCAGTGCAATGCTAGTAAGT 913 Query 1375 TCCACCAGGGCACGCTCCTTGT 1396 ||||||| || | ||||| || Sbjct 914 TCCACCAAGGAGCACTCCTAGT 935 Score = 105 bits (116), Expect = 3e-19 Identities = 126/163 (77%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 498 AAGAGCCTATTGTGCTAGAGAGGTTTTCCTCCGGAGCCGTGAATGCTGCTAATCCCAACC 557 |||||||||||| ||||| ||| |||||||| || ||||||| |||||||| ||| Sbjct 35 AAGAGCCTATTGAGCTAG-CTGGTAGTCCTCCGG-CCCCTGAATGCGGCTAATCCTAACT 92 Query 558 TCCGAGCGTGTGCGCACAATCCAGT-GTTGCTACGTCGTAACGCGCAAGTTGGAGGCGGA 616 | |||| ||| ||| | ||||| | || | ||||||||| |||| | | ||||| Sbjct 93 GCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGA 152 Query 617 ACAGACTACTTTCGGTACTCCGTGTTTCCTTATTATT-TTATA 658 || ||||||||| ||| ||||||||||||| ||||| ||||| Sbjct 153 ACCGACTACTTTGGGT-GTCCGTGTTTCCTT-TTATTCTTATA 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23606721074888