Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_002058.3 Length=7440 Score E Sequences producing significant alignments: (Bits) Value seq887 279 2e-71 >seq887 Length=1012 Score = 279 bits (308), Expect = 2e-71 Identities = 219/256 (86%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 388 CCATGGGACGCT--AGTTGTGAACAAGGTGTGAAGAGCCTATTGAGCTACATAAGAATCC 445 |||||||||||| | || ||| || ||||||||||||||||||||||| | | ||| Sbjct 4 CCATGGGACGCTCTAATTCTGA-CATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCC 62 Query 446 TCCGGCCCCTGAATGCGGCTAATCCCAACCTCGGAGCAGGTGGTCACAAACCAGTGATTG 505 ||||||||||||||||||||||||| ||| ||||||| || |||| |||||||| || Sbjct 63 TCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTG 122 Query 506 GCCTGTCGTAACGCGCAAGTCCGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTT 565 | |||||||||| |||| || | ||||||||||||||||||||||||||||||||||| Sbjct 123 GTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTCCTT 182 Query 566 TTATT-TTATTGTGGCTGCTTATGGTGACAATCACAGA-TTGTTATCATAAAGCGAATTG 623 ||||| |||| |||||||||||||||||||||| ||| |||||| |||| ||| |||| Sbjct 183 TTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGC-TATTG 241 Query 624 GATTGGCCATCCGGTG 639 |||||||||||||||| Sbjct 242 GATTGGCCATCCGGTG 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23689910929584