Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_003988.1 Length=7374 Score E Sequences producing significant alignments: (Bits) Value seq887 136 2e-28 >seq887 Length=1012 Score = 136 bits (150), Expect = 2e-28 Identities = 160/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 382 TGGGACGCCTTGATAATGACAAGGTGGGAAGAGCCTATTGGGCTAGCTGGT-TTCCTCCG 440 |||||||| | || ||||| |||| ||||||||||||| |||||||||| ||||||| Sbjct 7 TGGGACGCTCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAGTCCTCCG 66 Query 441 GCCTCCTGAATGCGGCTAACCTTAACCCCAGAGCATATGGTAGCAACCCAGCTACTAGTA 500 ||| ||||||||||||||| | |||| | ||||| ||| | | | |||| | || Sbjct 67 GCC-CCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGGGTGGTG 125 Query 501 TGTCATAATGCGTAAGTCTGGGATGGGACCGACTACTTTGGAGAGTCCGTGTTTCTATTG 560 |||| ||| | | || |||| || |||||||||||||| | ||||||||||| || Sbjct 126 TGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGG-GTGTCCGTGTTTCCTTTT 184 Query 561 TTTCTT-TAATCAAT-CTTATGGTGACAAT 588 ||||| || | | |||||||||||||| Sbjct 185 ATTCTTATATTGGCTGCTTATGGTGACAAT 214 Score = 113 bits (124), Expect = 2e-21 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 869 TGCTGAGGCATGTGGGTACAGCGACCGAGTTGCACAACTGACAATTGGCAATTCCACTAT 928 ||||||||||||||| ||||| || || || |||||| | || ||||||||||| || || Sbjct 573 TGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACTATTGGCAATTCTACCAT 632 Query 929 CACTACTCAGGAAGCCGCCAATGTGGTGGTCGCATATGGACAATGGCCT---GAATATTT 985 |||||| || ||||| || || | | || | ||||| | |||||| | | || Sbjct 633 CACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAGTGGCCTTCCTACTGTTC 692 Query 986 AGATTCGAAGGATGCAACTGCCGTGGATAAGCCCACACAGCCCGATGTAGCCTCAAATAG 1045 || || ||||| ||||| ||||| || || || | || ||||| | ||||| Sbjct 693 GGACTC---TGATGCCACTGCAGTGGACAAACCAACGCGCCCAGATGTTTCGGTGAATAG 749 Query 1046 ATTTTACACTCTTAAGACAGTGTCTTGGGAGAAGAGTTCAACTGGCTGGTATTGGAAATT 1105 |||||||| | | ||| | ||||||||| || | || ||||| |||||||| Sbjct 750 GTTTTACACATTGGACACAAAATTGTGGGAGAAGTCATCCAAGGGGTGGTACTGGAAATT 809 Query 1106 CTCGGAT 1112 | ||||| Sbjct 810 CCCGGAT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23478736683048