Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_004441.1 Length=7388 Score E Sequences producing significant alignments: (Bits) Value seq887 244 5e-61 >seq887 Length=1012 Score = 244 bits (270), Expect = 5e-61 Identities = 207/251 (82%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 419 AAGCCATAGGACGCCTCTTAGA-TGACAGGGTGTGAAGAGCCTACTGAGCTGGGTAGTAG 477 || |||| |||||| ||| | ||||| ||||||||||||||| |||||| | | |||| Sbjct 1 AATCCATGGGACGC-TCTAATTCTGACATGGTGTGAAGAGCCTATTGAGCTAGCTGGTAG 59 Query 478 TCCTCCGGCCCCTGAATGCGGCTAATCCTAACCACGGAGCGTCCACCAGCAATCCAGCTG 537 |||||||||||||||||||||||||||||||| |||||| | | | |||| | Sbjct 60 TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGAGCACATGCTCACGAACCAGTGG 119 Query 538 GCAGGGCGTCGTAACGGGCAACTCTGTGGCGGAACCGACTACTTTGGGTGTCCGTGTTTC 597 | | | ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 120 GTGGTGTGTCGTAACGGGCAACTCTGCAGCGGAACCGACTACTTTGGGTGTCCGTGTTTC 179 Query 598 CTTTTGATCCTATTTTGGCTGCTTATGGTGACAA-CGATAAGTTGTTATCATAAAGCTCT 656 ||||| || ||| |||||||||||||||||||| | | |||||||| |||| |||| | Sbjct 180 CTTTTATTCTTATATTGGCTGCTTATGGTGACAATCAAAGAGTTGTTACCATATAGCTAT 239 Query 657 TGGGTTGGCCA 667 ||| ||||||| Sbjct 240 TGGATTGGCCA 250 Score = 163 bits (180), Expect = 1e-36 Identities = 269/385 (70%), Gaps = 10/385 (3%) Strand=Plus/Plus Query 1008 CCCTTAAAGTCACCATCTGCAGAGGCTTGTGGTTACAGTGATAGGGTGGCTCAATTGACC 1067 || ||||| || |||||||| ||||| ||||||||||||||| ||||||| ||||| || Sbjct 556 CCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTGGCACAATTAACT 615 Query 1068 TTAGGAAACAGCACTATCACTACTCAAGAGGCAGCGAACATCACAGTTGCCTATGGTGAA 1127 | || || || |||||||| ||||| ||||| ||||||| ||||| ||||||||| Sbjct 616 ATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTTGGCTATGGTGAG 675 Query 1128 TGGCCATCGTACTTAAGTGATTTGGATGCTACCGCTGTAGACAAGACTACCAAACCAGGC 1187 ||||| || |||| || | ||||| || || || ||||| | || |||| Sbjct 676 TGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCAACGCGCCCAGAT 735 Query 1188 GTTTCATGTG-ATAGATTCTACACATTACCTGGAAAGAAA----TGGGAGGCAACTACTA 1242 ||||| ||| |||| || ||||||| |||| | ||| |||||| | | | Sbjct 736 GTTTC-GGTGAATAGGTTTTACACAT----TGGACACAAAATTGTGGGAGAAGTCATCCA 790 Query 1243 AAGGATGGGAGTGGAAACTTCCAGACGCACTGACAGAGCTTGGCGTTTTTGGACAGAATT 1302 | || ||| | |||||| | || || | | || || || || ||||| || ||| Sbjct 791 AGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTGGTCAAAATG 850 Query 1303 GTCAGTTCCATTTCTTATATAGGTGTGGGTGGTCTATACACGTGCAATGTAATGCCACGA 1362 |||||||| | | | ||| ||| |||| | || |||||||| || ||||| | | Sbjct 851 CACAGTTCCACTACCTCTATCGGTCAGGGTTCTGCATTCACGTGCAGTGCAATGCTAGTA 910 Query 1363 AGTTTCATCAGGGCACATTACTAGT 1387 |||| || || || || | ||||| Sbjct 911 AGTTCCACCAAGGAGCACTCCTAGT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23523531220192