Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_008714.1 Length=7390 Score E Sequences producing significant alignments: (Bits) Value seq887 105 3e-19 >seq887 Length=1012 Score = 105 bits (116), Expect = 3e-19 Identities = 299/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 945 AAGCAAGACCTTACGCAAGACCCCGAAAAATTTACCCGCCCTGTGGTAGATATGATGAAG 1004 ||||| ||||| ||| ||||| || || ||| | ||||| ||| || | | Sbjct 484 AAGCAGAGCCTTAAGCAGGACCCAGACAAGTTTGCAAATCCTGTCAAAGACATCTTCACT 543 Query 1005 GAAGCTGCAGTGCCGCTGAAAAGTCCATCTGCCGAAGCTTGTGGCTATAGCGATAGAGTC 1064 ||| |||| ||| | ||| ||||||||| || || ||||| || || ||| | || Sbjct 544 GAAATGGCAGCGCCATTAAAATCTCCATCTGCTGAGGCATGTGGTTACAGTGATCGGGTG 603 Query 1065 GCCCAATTGACGCTCGGCAACTCGACCATTACCACACAAGAAGCTGCAAATATCGTTGTG 1124 || ||||| || | ||||| || ||||| || || |||||||| ||||| ||| | || Sbjct 604 GCACAATTAACTATTGGCAATTCTACCATCACTACGCAAGAAGCAGCAAACATCATAGTT 663 Query 1125 GCATATGGAAGGTGGCCGTCCAACCTGAGAGACACCGATGCCACTGCTGTTGATAAGCCC 1184 | ||||| |||||| ||| || ||| | ||||||||||| || || || || Sbjct 664 GGCTATGGTGAGTGGCCTTCCTACTGTTCGGACTCTGATGCCACTGCAGTGGACAAACCA 723 Query 1185 ACCCAACCCGGTGTGTCAGCAGAGCGCTTCTACACTTT--ACCATCTGTTCAGTGGACTA 1242 || | || | ||| || | | | || ||||| || || || |||| | Sbjct 724 ACGCGCCCAGATGTTTCGGTGAATAGGTTTTACACATTGGACACAAAATT--GTGGGAGA 781 Query 1243 CTACCTTCAAGGGCCATTACTGGAAACTACCTGACGCCCTGTCTGAATTGGGACTTTTTG 1302 | | |||||| ||||||||| | || || | | ||||| || | |||| Sbjct 782 AGTCATCCAAGGGGTGGTACTGGAAATTCCCGGATGTGTTAACTGAAACCGGGGTCTTTG 841 Query 1303 GCCAAAATCTTCAATTCCATTATCTCTA-CAGAGGTGGATGGGCAATCCACGTTCAGTGT 1361 | |||||| || ||||| || ||||| | | || | || || ||||| ||||| Sbjct 842 GTCAAAATGCACAGTTCCACTACCTCTATCGGTCAGGGTTCTGC-ATTCACGTGCAGTGC 900 Query 1362 AATGCAACCAAATTCCACCAGGGTACGCTCCTCGT 1396 ||||| | || |||||||| || | ||||| || Sbjct 901 AATGCTAGTAAGTTCCACCAAGGAGCACTCCTAGT 935 Score = 102 bits (112), Expect = 4e-18 Identities = 117/152 (77%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 497 AAGAGCCTATTGTGCTGGTTTGGTTATCCTCCGGAGCCGTGAATGCTGCTAATCCTAACC 556 |||||||||||| ||| | | ||| |||||||| || ||||||| |||||||||||| Sbjct 35 AAGAGCCTATTGAGCTAGCT-GGTAGTCCTCCGGCCCC-TGAATGCGGCTAATCCTAACT 92 Query 557 CCCAAGCGTGTGCGCACAAACCAGT-GTTGCTACGTCGTAACGCGTAAGTTGGAGGCGGA 615 | ||| ||| ||| ||||||| | || | ||||||||| | || | | ||||| Sbjct 93 GCGGAGCACATGCTCACGAACCAGTGGGTGGTGTGTCGTAACGGGCAACTCTGCAGCGGA 152 Query 616 ACAGACTACTTTCGGTACTCCGTGTTTCCTTT 647 || ||||||||| ||| |||||||||||||| Sbjct 153 ACCGACTACTTTGGGT-GTCCGTGTTTCCTTT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23529930439784